Experiment set10IT032 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Ser

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.9 -9.4 Carbamoyl-phosphate synthase large chain compare
PP_4999 -5.1 -3.5 dihydroorotase-like protein compare
PP_5155 -5.0 -6.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4724 -4.9 -10.5 Carbamoyl-phosphate synthase small chain compare
PP_4909 -4.5 -11.7 phosphoserine phosphatase compare
PP_5095 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_0787 -3.5 -5.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_0164 -3.0 -11.4 conserved protein of unknown function compare
PP_1994 -2.6 -3.8 tRNA pseudouridine (38-40)synthase compare
PP_0735 -2.5 -3.5 molybdopterin-synthase adenylyltransferase compare
PP_1912 -2.4 -5.7 Phosphate acyltransferase compare
PP_1231 -2.3 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1734 -2.3 -2.7 Probable septum site-determining protein MinC compare
PP_2337 -2.2 -2.8 aconitate isomerase compare
PP_0339 -2.2 -4.8 Pyruvate dehydrogenase E1 component compare
PP_4964 -2.1 -4.1 D-erythrose 4-phosphate dehydrogenase compare
PP_0691 -2.0 -3.9 Glutamate 5-kinase compare
PP_4124 -2.0 -5.9 NADH-quinone oxidoreductase subunit G compare
PP_4917 -1.9 -5.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5331 -1.9 -4.1 Long-chain acyl-CoA thioester hydrolase compare
PP_2336 -1.8 -4.5 aconitate hydratase 1 compare
PP_1233 -1.7 -4.3 sulfurtransferase compare
PP_4121 -1.7 -5.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1664 -1.7 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4782 -1.7 -5.0 Phosphomethylpyrimidine kinase compare
PP_1381 -1.6 -2.1 4-carboxymuconolactone decarboxylase compare
PP_1022 -1.6 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4122 -1.5 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0888 -1.5 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_0001 -1.5 -1.9 probable chromosome-partitioning protein compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1215 -1.5 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_5104 -1.5 -6.1 thiazole synthase compare
PP_4268 -1.5 -1.5 nucleoid-associated broad specificity regulator compare
PP_3821 -1.5 -6.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0292 -1.4 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5328 -1.4 -3.6 putative phosphate transport system permease protein compare
PP_4131 -1.4 -5.1 NADH-quinone oxidoreductase subunit N compare
PP_4696 -1.4 -3.3 Nitrogen regulation protein NR(I) compare
PP_4922 -1.4 -8.3 Phosphomethylpyrimidine synthase compare
PP_3580 -1.4 -3.1 conserved protein of unknown function compare
PP_1426 -1.3 -8.4 L-aspartate oxidase compare
PP_1999 -1.3 -2.3 membrane protein required for colicin V production compare
PP_0833 -1.3 -1.9 queuine tRNA-ribosyltransferase compare
PP_0362 -1.3 -8.7 Biotin synthase compare
PP_2929 -1.3 -6.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1348 -1.3 -4.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4130 -1.3 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4895 -1.2 -2.7 tRNA dimethylallyltransferase compare
PP_t10 -1.2 -2.0 tRNA-Pro compare
PP_2581 -1.1 -1.5 conserved protein of unknown function compare
PP_2214 -1.1 -3.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5347 -1.1 -6.6 pyruvate carboxylase subunit A compare
PP_2334 -1.1 -4.2 2-methylisocitrate lyase compare
PP_5706 -1.1 -2.0 Sec translocation complex - SecG subunit compare
PP_5486 -1.1 -1.5 conserved protein of unknown function compare
PP_5346 -1.1 -6.7 pyruvate carboxylase subunit B compare
PP_3105 -1.1 -2.1 conserved membrane protein of unknown function compare
PP_4129 -1.0 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2928 -1.0 -5.8 Saccharopine dehydrogenase compare
PP_1012 -1.0 -3.2 DNA-binding response regulator compare
PP_4943 -1.0 -1.9 putative Glycosyl transferase compare
PP_0025 -1.0 -1.5 hypothetical protein compare
PP_1328 -1.0 -2.3 Protein MraZ compare
PP_5309 -1.0 -1.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_t12 -1.0 -1.2 tRNA-Thr compare
PP_0290 -1.0 -3.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0366 -1.0 -4.3 dethiobiotin synthetase compare
PP_5217 -1.0 -7.1 Polyphosphate kinase compare
PP_1733 -1.0 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3286 -0.9 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5580 -0.9 -2.2 protein of unknown function compare
PP_4620 -0.9 -5.1 Fumarylacetoacetase compare
PP_1017 -0.9 -4.6 mannose/glucose ABC transporter, permease protein conserved
PP_0393 -0.9 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5185 -0.9 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3926 -0.9 -2.2 short-chain dehydrogenase compare
PP_2217 -0.9 -3.9 enoyl-CoA hydratase compare
PP_5000 -0.9 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_4902 -0.9 -1.6 Oligoribonuclease compare
PP_4364 -0.9 -2.6 putative Anti-sigma F factor antagonist compare
PP_5327 -0.9 -4.9 putative phosphate ABC transporter, permease subunit compare
PP_5090 -0.9 -1.8 putative cell division protein compare
PP_3417 -0.8 -4.8 D-gluconate transporter compare
PP_2932 -0.8 -4.3 Amidase family protein compare
PP_0120 -0.8 -3.6 putative zinc ABC transporter compare
PP_4120 -0.8 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_5028 -0.8 -2.2 proline iminopeptidase compare
PP_5329 -0.8 -2.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0484 -0.8 -3.5 transporter of an unknown substrate compare
PP_5572 -0.8 -2.6 protein of unknown function compare
PP_2088 -0.8 -2.8 RNA polymerase sigma factor SigX compare
PP_0363 -0.8 -4.7 8-amino-7-oxononanoate synthase compare
PP_0513 -0.8 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2168 -0.8 -4.7 Transaldolase compare
PP_1217 -0.8 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5348 -0.7 -3.8 Transcriptional regulator, LysR family compare
PP_3519 -0.7 -1.1 putative Lipoprotein compare
PP_5289 -0.7 -1.7 Acetylglutamate kinase compare
PP_4984 -0.7 -4.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4961 -0.7 -0.8 putative Lipoprotein compare
PP_5445 -0.7 -1.7 conserved protein of unknown function compare
PP_3946 -0.7 -1.3 HTH-type transcriptional repressor NicR compare
PP_4296 -0.7 -1.2 conserved exported protein of unknown function compare
PP_5270 -0.7 -3.4 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_3819 -0.7 -4.3 glutathione reductase (NADPH) compare
PP_4722 -0.7 -2.9 Transcription elongation factor GreA compare
PP_4204 -0.7 -2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5015 -0.7 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3098 -0.7 -0.9 conserved protein of unknown function compare
PP_0846 -0.7 -0.7 DnaK-like molecular chaperone specific for IscU compare
PP_1553 -0.7 -1.1 conserved protein of unknown function compare
PP_5225 -0.7 -1.2 frataxin compare
PP_2378 -0.7 -1.3 Fe/S biogenesis protein NfuA compare
PP_5SB -0.7 -2.6 5S ribosomal RNA compare
PP_5022 -0.7 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_0872 -0.7 -3.2 Peptide chain release factor 3 compare
PP_5667 -0.7 -2.3 putative microcin B17-like-processing protein, McbC family compare
PP_0218 -0.7 -4.9 Sensory box protein compare
PP_1489 -0.7 -1.3 CheW domain protein compare
PP_0627 -0.7 -2.2 conserved protein of unknown function compare
PP_4669 -0.7 -1.8 OmpA family protein compare
PP_3731 -0.7 -3.9 Transcriptional regulator, TetR family compare
PP_5230 -0.7 -1.4 Tyrosine recombinase XerC compare
PP_2511 -0.7 -2.5 conserved protein of unknown function compare
PP_2718 -0.7 -1.7 arsenic resistance transcriptional regulator compare
PP_0289 -0.7 -3.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0914 -0.7 -4.5 GGDEF domain protein compare
PP_1011 -0.7 -3.7 glucokinase compare
PP_4875 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_5278 -0.7 -3.4 4-guanidinobutyraldehyde dehydrogenase compare
PP_2302 -0.7 -2.5 DNA-binding, ATP-dependent protease compare
PP_4018 -0.7 -2.2 Acetyltransferase, GNAT family compare
PP_2655 -0.7 -1.7 conserved protein of unknown function compare
PP_3320 -0.7 -1.8 conserved protein of unknown function compare
PP_5352 -0.7 -4.2 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0364 -0.6 -3.9 pimeloyl-[acp] methyl ester esterase compare
PP_4619 -0.6 -3.2 Maleylacetoacetate isomerase compare
PP_1493 -0.6 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0966 -0.6 -3.2 Histidinol dehydrogenase compare
PP_0276 -0.6 -0.9 Transcriptional regulator, Cro/CI family compare
PP_4993 -0.6 -2.4 Glutathione synthetase compare
PP_0274 -0.6 -0.7 putative transcriptional regulator containing HTH domain compare
PP_2379 -0.6 -3.0 putative cytochrome oxidase biogenesis protein compare
PP_2215 -0.6 -2.2 acetyl-CoA acetyltransferase compare
PP_3916 -0.6 -2.1 conserved protein of unknown function compare
PP_1269 -0.6 -0.8 Universal stress protein family compare
PP_4988 -0.6 -2.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3825 -0.6 -2.1 conserved protein of unknown function compare
PP_3052 -0.6 -1.0 conserved protein of unknown function compare
PP_1018 -0.6 -2.9 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_2633 -0.6 -0.8 conserved protein of unknown function compare
PP_4940 -0.6 -3.0 Putative glycosyltransferase compare
PP_5201 -0.6 -1.2 conserved protein of unknown function, UPF0149 family compare
PP_4671 -0.6 -2.6 conserved exported protein of unknown function compare
PP_0332 -0.6 -2.0 putative Acyltransferase compare
PP_1906 -0.6 -2.4 ribosomal large subunit pseudouridine synthase C compare
PP_2898 -0.6 -1.9 conserved exported protein of unknown function compare
PP_5229 -0.6 -1.8 conserved protein of unknown function compare
PP_1986 -0.6 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_0967 -0.6 -3.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1026 -0.6 -1.8 Peptidase, M23/M37 family compare
PP_1237 -0.6 -0.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1178 -0.6 -1.0 conserved protein of unknown function compare
PP_5014 -0.6 -1.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0291 -0.6 -1.9 conserved protein of unknown function compare
PP_1673 -0.6 -2.6 cobyrinate a,c-diamide synthase compare
PP_3930 -0.6 -1.7 conserved exported protein of unknown function compare
PP_2990 -0.6 -2.4 Transcriptional regulator, MerR family compare
PP_3341 -0.6 -1.9 nickel-responsive regulator compare
PP_5114 -0.6 -0.9 putative adenine methyltransferase compare
PP_0775 -0.6 -0.9 conserved protein of unknown function compare
PP_3762 -0.6 -3.0 Response regulator compare
PP_4695 -0.6 -3.4 Sensory box histidine kinase compare
PP_5456 -0.6 -0.8 conserved protein of unknown function compare
PP_0117 -0.6 -2.3 Zn(2+) ABC transporter - permease subunit compare
PP_0003 -0.6 -1.0 16S RNA methyltransferase compare
PP_3532 -0.6 -1.2 Transcriptional regulator, AsnC family compare
PP_4379 -0.6 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3484 -0.6 -1.9 Response regulator receiver protein compare
PP_5206 -0.6 -2.7 putative translation-related protein compare
PP_0821 -0.6 -2.8 conserved exported protein of unknown function compare
PP_4910 -0.5 -0.9 conserved protein of unknown function compare
PP_2826 -0.5 -1.3 Transcriptional regulator MexT compare
PP_3836 -0.5 -3.1 conserved protein of unknown function compare
PP_0556 -0.5 -1.8 Acetoin catabolism protein compare
PP_4897 -0.5 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PP_4338 -0.5 -3.3 Chemotaxis histidine kinase CheA compare
PP_3102 -0.5 -1.7 conserved protein of unknown function compare
PP_0119 -0.5 -1.6 putative zinc uptake regulation protein ZUR compare
PP_1825 -0.5 -1.4 conserved exported protein of unknown function compare
PP_3715 -0.5 -2.1 Muconate cycloisomerase 1 compare
PP_0695 -0.5 -2.1 conserved protein of unknown function compare
PP_2136 -0.5 -1.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3876 -0.5 -0.8 conserved protein of unknown function compare
PP_0365 -0.5 -3.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2335 -0.5 -3.5 methylcitrate synthase compare
PP_4345 -0.5 -2.9 Transcriptional regulator, GntR family compare
PP_4004 -0.5 -1.7 DNA translocase FtsK compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms