Experiment set10IT031 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Pro

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.4 -14.4 Carbamoyl-phosphate synthase large chain compare
PP_4724 -6.2 -8.5 Carbamoyl-phosphate synthase small chain compare
PP_4999 -4.2 -4.0 dihydroorotase-like protein compare
PP_0787 -3.9 -5.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0691 -3.6 -4.5 Glutamate 5-kinase compare
PP_1231 -3.4 -8.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5095 -3.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_4700 -3.2 -2.2 pantothenate synthetase compare
PP_2336 -3.2 -4.7 aconitate hydratase 1 compare
PP_1994 -2.5 -4.1 tRNA pseudouridine (38-40)synthase compare
PP_1734 -2.2 -2.9 Probable septum site-determining protein MinC compare
PP_1233 -2.2 -6.6 sulfurtransferase compare
PP_2402 -2.1 -3.1 putative Sensor histidine kinase compare
PP_0735 -2.1 -4.7 molybdopterin-synthase adenylyltransferase compare
PP_1912 -2.0 -7.2 Phosphate acyltransferase compare
PP_1664 -1.9 -3.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_0164 -1.9 -9.5 conserved protein of unknown function compare
PP_1237 -1.8 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1022 -1.7 -6.5 glucose 6-phosphate-1-dehydrogenase compare
PP_0393 -1.6 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0339 -1.6 -4.7 Pyruvate dehydrogenase E1 component compare
PP_4909 -1.6 -8.8 phosphoserine phosphatase compare
PP_2337 -1.5 -2.9 aconitate isomerase compare
PP_1426 -1.5 -8.4 L-aspartate oxidase compare
PP_2929 -1.5 -9.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1348 -1.5 -8.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4124 -1.4 -4.7 NADH-quinone oxidoreductase subunit G compare
PP_5104 -1.4 -7.4 thiazole synthase compare
PP_4782 -1.3 -4.8 Phosphomethylpyrimidine kinase compare
PP_4922 -1.3 -9.2 Phosphomethylpyrimidine synthase compare
PP_4964 -1.3 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_1428 -1.3 -2.8 Sigma factor AlgU negative regulatory protein compare
PP_3946 -1.2 -1.7 HTH-type transcriptional repressor NicR compare
PP_1716 -1.2 -3.9 Transcriptional regulator, Cro/CI family compare
PP_2217 -1.1 -4.8 enoyl-CoA hydratase compare
PP_2088 -1.1 -3.8 RNA polymerase sigma factor SigX compare
PP_4620 -1.1 -7.2 Fumarylacetoacetase compare
PP_2568 -1.1 -1.8 Ring-cleaving dioxygenase compare
PP_2302 -1.1 -4.7 DNA-binding, ATP-dependent protease compare
PP_0362 -1.1 -8.1 Biotin synthase compare
PP_4120 -1.1 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_2928 -1.0 -6.2 Saccharopine dehydrogenase compare
PP_4121 -1.0 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PP_4799 -1.0 -3.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4129 -1.0 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5706 -1.0 -2.6 Sec translocation complex - SecG subunit compare
PP_1366 -1.0 -2.1 Transcriptional regulator MvaT, P16 subunit compare
PP_5328 -1.0 -3.4 putative phosphate transport system permease protein compare
PP_5347 -0.9 -6.9 pyruvate carboxylase subunit A compare
PP_4342 -0.9 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_1493 -0.9 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1906 -0.9 -3.2 ribosomal large subunit pseudouridine synthase C compare
PP_4247 -0.9 -1.6 Exonuclease compare
PP_3417 -0.9 -4.6 D-gluconate transporter compare
PP_0855 -0.9 -2.6 conserved protein of unknown function compare
PP_2160 -0.9 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_0218 -0.8 -5.7 Sensory box protein compare
PP_4268 -0.8 -1.5 nucleoid-associated broad specificity regulator compare
PP_2214 -0.8 -3.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4131 -0.8 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_2379 -0.8 -4.3 putative cytochrome oxidase biogenesis protein compare
PP_1328 -0.8 -2.7 Protein MraZ compare
PP_5331 -0.8 -2.8 Long-chain acyl-CoA thioester hydrolase compare
PP_0888 -0.8 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_4018 -0.8 -2.5 Acetyltransferase, GNAT family compare
PP_1909 -0.8 -2.9 putative septum formation protein compare
PP_5327 -0.8 -4.7 putative phosphate ABC transporter, permease subunit compare
PP_4696 -0.8 -2.7 Nitrogen regulation protein NR(I) compare
PP_4066 -0.8 -2.2 methylglutaconyl-CoA hydratase compare
PP_1362 -0.8 -2.9 pyruvate kinase II compare
PP_4835 -0.8 -2.6 conserved exported protein of unknown function compare
PP_1468 -0.8 -2.0 Tyrosine recombinase XerD compare
PP_5348 -0.8 -5.0 Transcriptional regulator, LysR family compare
PP_4787 -0.7 -2.2 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2932 -0.7 -5.2 Amidase family protein compare
PP_5346 -0.7 -4.7 pyruvate carboxylase subunit B compare
PP_5217 -0.7 -5.8 Polyphosphate kinase compare
PP_5329 -0.7 -3.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0839 -0.7 -2.6 tRNA Cm32/Um32 methyltransferase compare
PP_0246 -0.7 -2.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_1629 -0.7 -3.1 Protein RecA compare
PP_5486 -0.7 -2.2 conserved protein of unknown function compare
PP_0364 -0.7 -4.5 pimeloyl-[acp] methyl ester esterase compare
PP_0292 -0.7 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -0.7 -4.7 Histidinol dehydrogenase compare
PP_0834 -0.7 -1.5 Sec translocation complex subunit YajC compare
PP_0963 -0.7 -1.8 putative BolA family protein compare
PP_2070 -0.7 -2.0 Transcriptional regulator, AraC family compare
PP_4917 -0.7 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0978 -0.7 -1.8 conserved protein of unknown function compare
PP_3892 -0.7 -1.2 conserved protein of unknown function compare
PP_4726 -0.7 -1.5 Chaperone protein DnaJ compare
PP_5448 -0.7 -3.2 conserved protein of unknown function compare
PP_4984 -0.7 -4.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1733 -0.7 -1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4943 -0.7 -1.4 putative Glycosyl transferase compare
PP_2334 -0.6 -2.7 2-methylisocitrate lyase compare
PP_5352 -0.6 -4.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3089 -0.6 -2.9 conserved protein of unknown function compare
PP_1729 -0.6 -1.6 conserved protein of unknown function compare
PP_0366 -0.6 -4.2 dethiobiotin synthetase compare
PP_4895 -0.6 -1.9 tRNA dimethylallyltransferase compare
PP_0289 -0.6 -3.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0401 -0.6 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_0363 -0.6 -4.6 8-amino-7-oxononanoate synthase compare
PP_0365 -0.6 -4.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4126 -0.6 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4130 -0.6 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1986 -0.6 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_3726 -0.6 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_5619 -0.6 -2.5 protein of unknown function compare
PP_0512 -0.6 -1.6 hypothetical protein compare
PP_5139 -0.6 -2.6 cadmium translocating P-type ATPase compare
PP_3052 -0.6 -1.2 conserved protein of unknown function compare
PP_1654 -0.6 -1.9 cysteine synthase B compare
PP_0967 -0.6 -4.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5295 -0.6 -1.3 conserved protein of unknown function compare
PP_5338 -0.6 -1.6 aspartate ammonia-lyase compare
PP_1018 -0.6 -3.3 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_1609 -0.6 -1.8 conserved protein of unknown function compare
PP_4701 -0.6 -0.8 glucose-6-phosphate isomerase compare
PP_0001 -0.6 -1.1 probable chromosome-partitioning protein compare
PP_0439 -0.6 -2.5 conserved protein of unknown function compare
PP_4593 -0.6 -1.2 conserved protein of unknown function compare
PP_5093 -0.6 -0.8 twitching motility protein compare
PP_1011 -0.6 -4.0 glucokinase compare
PP_5337 -0.6 -3.2 LysR family transcriptional regulator compare
PP_3938 -0.6 -1.6 conserved protein of unknown function compare
PP_1142 -0.6 -1.0 conserved protein of unknown function compare
PP_1009 -0.6 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1269 -0.6 -0.9 Universal stress protein family compare
PP_t10 -0.5 -1.8 tRNA-Pro compare
PP_1985 -0.5 -2.0 3-isopropylmalate dehydratase large subunit compare
PP_5475 -0.5 -1.5 conserved protein of unknown function compare
PP_3731 -0.5 -3.7 Transcriptional regulator, TetR family compare
PP_5652 -0.5 -1.3 conserved protein of unknown function, phage origin compare
PP_4890 -0.5 -2.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_3198 -0.5 -1.4 Ferredoxin, 2Fe-2S compare
PP_2335 -0.5 -3.8 methylcitrate synthase compare
PP_1215 -0.5 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0513 -0.5 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2307 -0.5 -1.1 conserved protein of unknown function compare
PP_4993 -0.5 -1.7 Glutathione synthetase compare
PP_2716 -0.5 -1.5 arsenate reductase compare
PP_1441 -0.5 -1.6 tRNA (cmo5U34)-methyltransferase compare
PP_3926 -0.5 -1.2 short-chain dehydrogenase compare
PP_4262 -0.5 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2414 -0.5 -1.1 conserved exported protein of unknown function compare
PP_0407 -0.5 -2.4 DnaJ-like protein DjlA compare
PP_4004 -0.5 -1.7 DNA translocase FtsK compare
PP_5167 -0.5 -2.3 conserved hypothetical protein compare
PP_0914 -0.5 -3.5 GGDEF domain protein compare
PP_0435 -0.5 -4.2 Peptidase, M23/M37 family compare
PP_4267 -0.5 -2.4 Recombination protein RecR compare
PP_3365 -0.5 -1.0 Acetolactate synthase compare
PP_4937 -0.5 -2.3 toluene tolerance protein compare
PP_1013 -0.5 -2.6 Sensor histidine kinase compare
PP_3332 -0.5 -1.3 putative cytochrome c-type protein compare
PP_4824 -0.5 -2.5 Sensor histidine kinase/response regulator compare
PP_3505 -0.5 -1.1 conserved protein of unknown function compare
PP_2497 -0.5 -1.8 conserved protein of unknown function compare
PP_5155 -0.5 -2.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1826 -0.5 -1.9 Hydrolase, isochorismatase family compare
PP_2804 -0.5 -1.9 Hydrolase, alpha/beta fold family compare
PP_0434 -0.5 -3.4 Anhydro-N-acetylmuramic acid kinase compare
PP_4874 -0.5 -0.7 50S ribosomal protein L9 compare
PP_5350 -0.5 -1.3 Transcriptional regulator, RpiR family compare
PP_0921 -0.5 -1.5 Transcriptional regulator, ArsR family compare
PP_4695 -0.5 -3.3 Sensory box histidine kinase compare
PP_1988 -0.5 -2.9 3-isopropylmalate dehydrogenase compare
PP_4619 -0.5 -2.9 Maleylacetoacetate isomerase compare
PP_4481 -0.5 -2.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0628 -0.5 -1.9 conserved protein of unknown function compare
PP_0120 -0.5 -2.7 putative zinc ABC transporter compare
PP_2404 -0.5 -1.9 conserved exported protein of unknown function compare
PP_3821 -0.5 -2.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2027 -0.5 -1.8 conserved exported protein of unknown function compare
PP_0293 -0.5 -1.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0872 -0.5 -2.9 Peptide chain release factor 3 compare
PP_2025 -0.5 -1.7 Exonuclease SbcD compare
PP_2104 -0.5 -3.0 conserved membrane protein of unknown function compare
PP_5185 -0.5 -2.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5600 -0.5 -0.8 conserved protein of unknown function compare
PP_4699 -0.4 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0673 -0.4 -1.8 conserved protein of unknown function compare
PP_4871 -0.4 -2.0 putative lysine decarboxylase family protein compare
PP_4913 -0.4 -1.8 conserved protein of unknown function compare
PP_3008 -0.4 -2.2 conserved exported protein of unknown function compare
PP_0118 -0.4 -2.9 zinc import ATP-binding protein compare
PP_5610 -0.4 -1.2 protein of unknown function compare
PP_2222 -0.4 -1.7 conserved protein of unknown function compare
PP_5624 -0.4 -1.9 conserved protein of unknown function compare
PP_0040 -0.4 -1.5 hypothetical protein compare
PP_5227 -0.4 -2.3 diaminopimelate decarboxylase compare
PP_0290 -0.4 -2.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1079 -0.4 -2.3 Ornithine carbamoyltransferase compare
PP_2729 -0.4 -1.8 conserved protein of unknown function compare
PP_5449 -0.4 -1.8 conserved exported protein of unknown function compare
PP_1516 -0.4 -1.6 RND membrane fusion protein compare
PP_3094 -0.4 -1.9 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms