Experiment set10IT029 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Met

200 most important genes:

  gene name fitness t score description  
PP_4723 -5.4 -16.4 Carbamoyl-phosphate synthase large chain compare
PP_0787 -5.1 -6.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5098 -4.5 -11.6 methionine biosynthesis protein MetW compare
PP_4724 -4.4 -7.5 Carbamoyl-phosphate synthase small chain compare
PP_5095 -4.3 -3.0 pyrroline-5-carboxylate reductase compare
PP_5097 -3.6 -15.1 homoserine O-acetyltransferase compare
PP_1231 -3.1 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4999 -3.1 -3.3 dihydroorotase-like protein compare
PP_4700 -3.0 -2.1 pantothenate synthetase compare
PP_0691 -2.9 -3.9 Glutamate 5-kinase compare
PP_2001 -2.7 -10.3 O-succinylhomoserine sulfhydrylase compare
PP_1664 -2.6 -5.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_1994 -2.5 -3.7 tRNA pseudouridine (38-40)synthase compare
PP_1215 -2.4 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0735 -2.4 -3.6 molybdopterin-synthase adenylyltransferase compare
PP_3892 -2.3 -2.2 conserved protein of unknown function compare
PP_4902 -2.3 -4.0 Oligoribonuclease compare
PP_0001 -2.2 -2.6 probable chromosome-partitioning protein compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0164 -2.0 -8.1 conserved protein of unknown function compare
PP_4199 -1.8 -1.8 putative Lipoprotein compare
PP_2337 -1.7 -2.9 aconitate isomerase compare
PP_0888 -1.7 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_0339 -1.7 -4.3 Pyruvate dehydrogenase E1 component compare
PP_2336 -1.7 -4.2 aconitate hydratase 1 compare
PP_4964 -1.6 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1734 -1.6 -2.7 Probable septum site-determining protein MinC compare
PP_1912 -1.6 -5.0 Phosphate acyltransferase compare
PP_1426 -1.6 -9.4 L-aspartate oxidase compare
PP_1366 -1.5 -2.2 Transcriptional regulator MvaT, P16 subunit compare
PP_4895 -1.5 -3.4 tRNA dimethylallyltransferase compare
PP_4943 -1.5 -2.3 putative Glycosyl transferase compare
PP_4364 -1.4 -3.5 putative Anti-sigma F factor antagonist compare
PP_2928 -1.4 -6.0 Saccharopine dehydrogenase compare
PP_1237 -1.3 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5329 -1.3 -3.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1986 -1.3 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_1493 -1.2 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4546 -1.2 -3.5 ATP-dependent helicase HrpA compare
PP_4131 -1.2 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_2718 -1.2 -3.5 arsenic resistance transcriptional regulator compare
PP_2217 -1.1 -2.5 enoyl-CoA hydratase compare
PP_4124 -1.1 -4.1 NADH-quinone oxidoreductase subunit G compare
PP_3730 -1.1 -2.4 Transcriptional regulatory protein AruR compare
PP_5104 -1.1 -5.9 thiazole synthase compare
PP_1362 -1.1 -2.7 pyruvate kinase II compare
PP_4342 -1.1 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_3946 -1.1 -1.8 HTH-type transcriptional repressor NicR compare
PP_0833 -1.1 -1.4 queuine tRNA-ribosyltransferase compare
PP_4922 -1.1 -6.6 Phosphomethylpyrimidine synthase compare
PP_4910 -1.1 -1.8 conserved protein of unknown function compare
PP_1381 -1.1 -1.7 4-carboxymuconolactone decarboxylase compare
PP_4909 -1.0 -4.3 phosphoserine phosphatase compare
PP_t13 -1.0 -3.0 tRNA-Lys compare
PP_1733 -1.0 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_2929 -1.0 -5.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1022 -1.0 -3.3 glucose 6-phosphate-1-dehydrogenase compare
PP_4619 -1.0 -4.6 Maleylacetoacetate isomerase compare
PP_5216 -1.0 -2.1 exopolyphosphatase compare
PP_4720 -1.0 -2.3 putative RNA binding protein compare
PP_0719 -1.0 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2414 -1.0 -1.9 conserved exported protein of unknown function compare
PP_3365 -1.0 -1.6 Acetolactate synthase compare
PP_5350 -0.9 -2.5 Transcriptional regulator, RpiR family compare
PP_1348 -0.9 -3.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5706 -0.9 -1.8 Sec translocation complex - SecG subunit compare
PP_1702 -0.9 -2.9 Recombination-associated protein RdgC compare
PP_2214 -0.9 -2.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3519 -0.9 -1.3 putative Lipoprotein compare
PP_5331 -0.9 -2.8 Long-chain acyl-CoA thioester hydrolase compare
PP_1079 -0.9 -3.8 Ornithine carbamoyltransferase compare
PP_4156 -0.9 -2.1 Transcriptional regulator, LysR family compare
PP_1826 -0.9 -1.7 Hydrolase, isochorismatase family compare
PP_1233 -0.9 -2.9 sulfurtransferase compare
PP_1214 -0.9 -2.2 putative transcriptional regulatory protein compare
PP_4196 -0.9 -2.3 conserved exported protein of unknown function compare
PP_1553 -0.8 -2.7 conserved protein of unknown function compare
PP_4532 -0.8 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4696 -0.8 -2.8 Nitrogen regulation protein NR(I) compare
PP_5580 -0.8 -1.8 protein of unknown function compare
PP_3821 -0.8 -4.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1322 -0.8 -1.7 putative Lipoprotein compare
PP_4120 -0.8 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_5328 -0.8 -2.4 putative phosphate transport system permease protein compare
PP_0874 -0.8 -2.0 conserved protein of unknown function compare
PP_1186 -0.8 -1.7 two component system DNA-binding transcriptional dual regulator compare
PP_2378 -0.8 -1.5 Fe/S biogenesis protein NfuA compare
PP_4620 -0.8 -4.8 Fumarylacetoacetase compare
PP_4136 -0.8 -0.5 Transcriptional regulator, LuxR family compare
PP_3332 -0.8 -2.3 putative cytochrome c-type protein compare
PP_4782 -0.8 -2.6 Phosphomethylpyrimidine kinase compare
PP_2947 -0.7 -1.9 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4130 -0.7 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3417 -0.7 -3.4 D-gluconate transporter compare
PP_5327 -0.7 -3.7 putative phosphate ABC transporter, permease subunit compare
PP_5486 -0.7 -2.2 conserved protein of unknown function compare
PP_1216 -0.7 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3903 -0.7 -1.5 conserved protein of unknown function compare
PP_0340 -0.7 -5.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1629 -0.7 -3.1 Protein RecA compare
PP_2903 -0.7 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3197 -0.7 -3.5 Glyoxalase family protein compare
PP_2000 -0.7 -0.5 amidophosphoribosyl transferase compare
PP_5001 -0.7 -1.4 protease HslVU, ATPase component compare
PP_2160 -0.7 -2.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4121 -0.7 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0362 -0.7 -5.0 Biotin synthase compare
PP_1729 -0.7 -1.4 conserved protein of unknown function compare
PP_5705 -0.7 -1.3 protein of unknown function compare
PP_5052 -0.7 -2.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_3320 -0.7 -1.7 conserved protein of unknown function compare
PP_4126 -0.7 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_3102 -0.7 -2.4 conserved protein of unknown function compare
PP_0363 -0.7 -4.6 8-amino-7-oxononanoate synthase compare
PP_1045 -0.7 -1.6 Type II secretion pathway protein XcpP compare
PP_3245 -0.7 -1.0 conserved protein of unknown function compare
PP_4271 -0.6 -0.8 conserved protein of unknown function compare
PP_3243 -0.6 -2.2 Acetyltransferase, GNAT family compare
PP_3333 -0.6 -2.8 conserved protein of unknown function compare
PP_5227 -0.6 -3.4 diaminopimelate decarboxylase compare
PP_1480 -0.6 -1.9 conserved protein of unknown function compare
PP_4671 -0.6 -2.4 conserved exported protein of unknown function compare
PP_0254 -0.6 -2.0 conserved protein of unknown function compare
PP_3726 -0.6 -1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_5347 -0.6 -4.2 pyruvate carboxylase subunit A compare
PP_0978 -0.6 -2.0 conserved protein of unknown function compare
PP_4018 -0.6 -1.4 Acetyltransferase, GNAT family compare
PP_0364 -0.6 -3.5 pimeloyl-[acp] methyl ester esterase compare
PP_4379 -0.6 -2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2883 -0.6 -1.4 conserved protein of unknown function compare
PP_3027 -0.6 -2.7 conserved protein of unknown function compare
PP_4829 -0.6 -2.3 putative precorrin-3B synthase compare
PP_4811 -0.6 -2.5 Gamma-glutamyl phosphate reductase compare
PP_0855 -0.6 -1.3 conserved protein of unknown function compare
PP_3408 -0.6 -2.2 cobalt transporter subunit A compare
PP_3378 -0.6 -1.0 putative 2-ketogluconokinase compare
PP_2581 -0.6 -1.1 conserved protein of unknown function compare
PP_4726 -0.6 -1.4 Chaperone protein DnaJ compare
PP_2416 -0.6 -1.0 putative Iron ABC transporter, ATP-binding protein compare
PP_4348 -0.6 -2.3 putative Cystathionine beta-lyase compare
PP_1041 -0.6 -1.1 twin arginine protein export complex subunit compare
PP_4966 -0.6 -1.7 transcriptional regulator of methionine metabolism compare
PP_0365 -0.6 -3.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0127 -0.6 -2.3 Thiol:disulfide interchange protein compare
PP_3508 -0.6 -2.5 Protein CobW compare
PP_5114 -0.6 -1.0 putative adenine methyltransferase compare
PP_2633 -0.6 -1.3 conserved protein of unknown function compare
PP_1097 -0.6 -1.0 Methionine--tRNA ligase compare
PP_0218 -0.6 -4.0 Sensory box protein compare
PP_4684 -0.6 -2.5 conserved protein of unknown function with kinase-like domain compare
PP_0914 -0.6 -4.4 GGDEF domain protein compare
PP_2951 -0.6 -2.7 Transcriptional regulator, TetR family compare
PP_1013 -0.6 -3.4 Sensor histidine kinase compare
PP_0801 -0.6 -1.0 conserved exported protein of unknown function compare
PP_5528 -0.6 -0.6 conserved protein of unknown function compare
PP_5652 -0.5 -1.5 conserved protein of unknown function, phage origin compare
PP_2046 -0.5 -1.7 Transcriptional regulator, LysR family compare
PP_0035 -0.5 -1.3 putative bactoprenol-linked glycose transferase compare
PP_0872 -0.5 -2.5 Peptide chain release factor 3 compare
PP_5346 -0.5 -3.4 pyruvate carboxylase subunit B compare
PP_4917 -0.5 -1.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2624 -0.5 -1.9 conserved protein of unknown function compare
PP_4074 -0.5 -1.9 conserved protein of unknown function compare
PP_4940 -0.5 -2.6 Putative glycosyltransferase compare
PP_2835 -0.5 -1.2 putative oxidoreductase compare
PP_2087 -0.5 -1.5 CmpX protein compare
PP_0366 -0.5 -2.5 dethiobiotin synthetase compare
PP_2025 -0.5 -1.5 Exonuclease SbcD compare
PP_2379 -0.5 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_1328 -0.5 -1.5 Protein MraZ compare
PP_2462 -0.5 -1.7 conserved protein of unknown function compare
PP_3614 -0.5 -1.9 conserved membrane protein of unknown function compare
PP_3480 -0.5 -2.1 conserved protein of unknown function compare
PP_1011 -0.5 -2.9 glucokinase compare
PP_1096 -0.5 -1.2 putative electron transport complex protein compare
PP_1988 -0.5 -2.7 3-isopropylmalate dehydrogenase compare
PP_4937 -0.5 -1.6 toluene tolerance protein compare
PP_3924 -0.5 -1.4 conserved protein of unknown function compare
PP_3484 -0.5 -1.7 Response regulator receiver protein compare
PP_5042 -0.5 -1.7 conserved protein of unknown function compare
PP_3434 -0.5 -1.1 conserved protein of unknown function compare
PP_5451 -0.5 -1.7 protein of unknown function compare
PP_1466 -0.5 -1.5 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_0775 -0.5 -1.3 conserved protein of unknown function compare
PP_4739 -0.5 -2.1 conserved protein of unknown function compare
PP_2999 -0.5 -0.9 Glyoxalase family protein compare
PP_5279 -0.5 -1.2 conserved protein of unknown function compare
PP_4094 -0.5 -1.8 conserved protein of unknown function compare
PP_2142 -0.5 -1.7 Cell division inhibitor SulA compare
PP_1697 -0.5 -0.7 transcriptional regulator, GntR family compare
PP_4984 -0.5 -3.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5603 -0.5 -2.7 putative FAD dependent oxidoreductase compare
PP_0398 -0.5 -1.3 Thiosulfate sulfurtransferase GlpE compare
PP_5028 -0.5 -1.4 proline iminopeptidase compare
PP_1468 -0.5 -1.1 Tyrosine recombinase XerD compare
PP_1138 -0.5 -1.3 branched chain amino acid transporter - ATP binding subunit compare
PP_2932 -0.5 -2.5 Amidase family protein compare
PP_2203 -0.5 -1.2 conserved protein of unknown function compare
PP_2036 -0.5 -2.7 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5453 -0.5 -0.7 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms