Experiment set10IT026 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Ile

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.2 -12.0 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.8 -6.9 Carbamoyl-phosphate synthase small chain compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_1231 -4.2 -8.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4680 -3.8 -17.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -3.6 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_4678 -3.2 -15.0 Ketol-acid reductoisomerase compare
PP_5128 -3.1 -9.7 Dihydroxy-acid dehydratase compare
PP_0787 -3.1 -5.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0164 -2.4 -8.9 conserved protein of unknown function compare
PP_3821 -2.4 -9.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5338 -2.3 -3.1 aspartate ammonia-lyase compare
PP_4700 -2.3 -2.7 pantothenate synthetase compare
PP_4940 -2.0 -7.9 Putative glycosyltransferase compare
PP_5303 -2.0 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0339 -2.0 -3.5 Pyruvate dehydrogenase E1 component compare
PP_5095 -1.9 -2.0 pyrroline-5-carboxylate reductase compare
PP_0691 -1.9 -3.4 Glutamate 5-kinase compare
PP_2414 -1.9 -1.8 conserved exported protein of unknown function compare
PP_1664 -1.8 -4.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1426 -1.8 -10.0 L-aspartate oxidase compare
PP_0833 -1.7 -1.9 queuine tRNA-ribosyltransferase compare
PP_0393 -1.6 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4782 -1.6 -6.2 Phosphomethylpyrimidine kinase compare
PP_4726 -1.5 -3.1 Chaperone protein DnaJ compare
PP_4364 -1.5 -2.8 putative Anti-sigma F factor antagonist compare
PP_5104 -1.5 -8.7 thiazole synthase compare
PP_4964 -1.4 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_4131 -1.4 -5.3 NADH-quinone oxidoreductase subunit N compare
PP_5331 -1.4 -3.8 Long-chain acyl-CoA thioester hydrolase compare
PP_1022 -1.4 -4.2 glucose 6-phosphate-1-dehydrogenase compare
PP_4696 -1.4 -4.6 Nitrogen regulation protein NR(I) compare
PP_1912 -1.4 -4.0 Phosphate acyltransferase compare
PP_2929 -1.4 -7.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1493 -1.3 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0735 -1.3 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_0888 -1.3 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_5324 -1.3 -2.8 Response regulator compare
PP_2928 -1.3 -6.5 Saccharopine dehydrogenase compare
PP_1994 -1.3 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_4943 -1.2 -1.6 putative Glycosyl transferase compare
PP_1348 -1.1 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1233 -1.1 -4.7 sulfurtransferase compare
PP_4942 -1.1 -2.2 conserved protein of unknown function compare
PP_0048 -1.1 -1.5 conserved protein of unknown function compare
PP_4922 -1.1 -6.7 Phosphomethylpyrimidine synthase compare
PP_0362 -1.1 -7.8 Biotin synthase compare
PP_4936 -1.1 -4.3 O-antigen polymerase compare
PP_4130 -1.1 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2337 -1.1 -2.2 aconitate isomerase compare
PP_1988 -1.1 -6.7 3-isopropylmalate dehydrogenase compare
PP_3926 -1.0 -2.4 short-chain dehydrogenase compare
PP_0274 -1.0 -2.0 putative transcriptional regulator containing HTH domain compare
PP_5346 -1.0 -6.1 pyruvate carboxylase subunit B compare
PP_2378 -1.0 -1.7 Fe/S biogenesis protein NfuA compare
PP_0001 -1.0 -1.6 probable chromosome-partitioning protein compare
PP_4917 -1.0 -3.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2217 -1.0 -3.8 enoyl-CoA hydratase compare
PP_5350 -1.0 -2.7 Transcriptional regulator, RpiR family compare
PP_2379 -1.0 -4.0 putative cytochrome oxidase biogenesis protein compare
PP_0364 -1.0 -5.8 pimeloyl-[acp] methyl ester esterase compare
PP_0719 -0.9 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4993 -0.9 -2.9 Glutathione synthetase compare
PP_3447 -0.9 -1.5 conserved membrane protein of unknown function compare
PP_1176 -0.9 -2.7 conserved protein of unknown function compare
PP_5486 -0.9 -1.5 conserved protein of unknown function compare
PP_1985 -0.9 -3.0 3-isopropylmalate dehydratase large subunit compare
PP_4120 -0.9 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_1468 -0.9 -2.2 Tyrosine recombinase XerD compare
PP_1609 -0.9 -2.0 conserved protein of unknown function compare
PP_5347 -0.9 -5.7 pyruvate carboxylase subunit A compare
PP_2903 -0.9 -2.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4909 -0.9 -4.7 phosphoserine phosphatase compare
PP_3484 -0.9 -2.7 Response regulator receiver protein compare
PP_5348 -0.9 -5.1 Transcriptional regulator, LysR family compare
PP_0363 -0.9 -6.0 8-amino-7-oxononanoate synthase compare
PP_0914 -0.9 -6.7 GGDEF domain protein compare
PP_0834 -0.9 -2.1 Sec translocation complex subunit YajC compare
PP_4124 -0.9 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_5337 -0.9 -3.0 LysR family transcriptional regulator compare
PP_5054 -0.9 -1.6 glutaredoxin 3 compare
PP_0366 -0.8 -4.8 dethiobiotin synthetase compare
PP_5225 -0.8 -1.5 frataxin compare
PP_4482 -0.8 -2.9 Transcriptional regulator, AraC family compare
PP_0290 -0.8 -4.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0593 -0.8 -0.8 putative ribosome-binding factor compare
PP_4938 -0.8 -4.2 putative Glycosyl transferase compare
PP_4379 -0.8 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5217 -0.8 -6.4 Polyphosphate kinase compare
PP_3551 -0.8 -1.5 DNA-binding response regulator, LuxR family compare
PP_0289 -0.8 -4.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4984 -0.8 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3603 -0.8 -4.2 Transcriptional regulator, GntR family compare
PP_0848 -0.8 -1.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3105 -0.8 -2.5 conserved membrane protein of unknown function compare
PP_5SB -0.8 -3.0 5S ribosomal RNA compare
PP_5328 -0.8 -3.1 putative phosphate transport system permease protein compare
PP_0365 -0.8 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2307 -0.7 -2.5 conserved protein of unknown function compare
PP_4532 -0.7 -1.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4895 -0.7 -1.9 tRNA dimethylallyltransferase compare
PP_0292 -0.7 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -0.7 -5.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4546 -0.7 -2.3 ATP-dependent helicase HrpA compare
PP_2336 -0.7 -2.3 aconitate hydratase 1 compare
PP_2716 -0.7 -2.5 arsenate reductase compare
PP_4517 -0.7 -1.4 conserved protein of unknown function compare
PP_1015 -0.7 -3.9 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_5230 -0.7 -1.5 Tyrosine recombinase XerC compare
PP_3946 -0.7 -0.9 HTH-type transcriptional repressor NicR compare
PP_4129 -0.7 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1734 -0.7 -1.4 Probable septum site-determining protein MinC compare
PP_1986 -0.7 -1.7 3-isopropylmalate dehydratase small subunit compare
PP_5028 -0.7 -2.0 proline iminopeptidase compare
PP_0963 -0.7 -2.2 putative BolA family protein compare
PP_4094 -0.7 -2.2 conserved protein of unknown function compare
PP_1629 -0.7 -2.4 Protein RecA compare
PP_1528 -0.7 -1.0 conserved protein of unknown function compare
PP_1074 -0.7 -1.9 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5600 -0.7 -1.3 conserved protein of unknown function compare
PP_1017 -0.7 -3.5 mannose/glucose ABC transporter, permease protein conserved
PP_5617 -0.6 -2.8 conserved protein of unknown function compare
PP_4126 -0.6 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_1186 -0.6 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_4897 -0.6 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PP_3806 -0.6 -1.6 Hydrolase, isochorismatase family compare
PP_2334 -0.6 -3.1 2-methylisocitrate lyase compare
PP_4620 -0.6 -3.7 Fumarylacetoacetase compare
PP_3307 -0.6 -1.4 conserved protein of unknown function compare
PP_2441 -0.6 -2.3 conserved protein of unknown function compare
PP_0218 -0.6 -3.9 Sensory box protein compare
PP_5227 -0.6 -3.1 diaminopimelate decarboxylase compare
PP_5495 -0.6 -1.4 protein of unknown function compare
PP_1802 -0.6 -5.1 glycosyl transferase compare
PP_1428 -0.6 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_3286 -0.6 -2.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0195 -0.6 -1.7 conserved protein of unknown function compare
PP_1018 -0.6 -2.6 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_2898 -0.6 -1.8 conserved exported protein of unknown function compare
PP_4722 -0.6 -1.9 Transcription elongation factor GreA compare
PP_t12 -0.6 -0.9 tRNA-Thr compare
PP_3519 -0.6 -1.0 putative Lipoprotein compare
PP_1054 -0.6 -1.6 Type II secretion pathway protein XcpZ compare
PP_3892 -0.6 -1.0 conserved protein of unknown function compare
PP_4828 -0.6 -0.6 Precorrin-8X methylmutase compare
PP_1761 -0.6 -4.6 diguanylate cyclase with phosphodiesterase domain compare
PP_5248 -0.6 -1.0 putative hydrolase compare
PP_2302 -0.6 -2.6 DNA-binding, ATP-dependent protease compare
PP_0978 -0.6 -1.2 conserved protein of unknown function compare
PP_0087 -0.6 -1.5 conserved exported protein of unknown function compare
PP_3819 -0.6 -2.9 glutathione reductase (NADPH) compare
PP_1319 -0.6 -2.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1776 -0.6 -4.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2970 -0.6 -1.2 conserved exported protein of unknown function compare
PP_1013 -0.6 -2.8 Sensor histidine kinase compare
PP_1906 -0.6 -1.7 ribosomal large subunit pseudouridine synthase C compare
PP_0951 -0.6 -3.1 Ribosome hibernation promoting factor compare
PP_0966 -0.6 -3.7 Histidinol dehydrogenase compare
PP_4679 -0.5 -1.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4355 -0.5 -1.0 flagellar export apparatus subunit compare
PP_3938 -0.5 -1.2 conserved protein of unknown function compare
PP_0965 -0.5 -3.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0065 -0.5 -1.4 NAD-binding component of TrK potassium transporter compare
PP_2765 -0.5 -1.5 putative Sulfonate monooxygenase MsuD compare
PP_1318 -0.5 -3.4 Cytochrome b compare
PP_4663 -0.5 -2.4 conserved transmembrane protein of unknown function compare
PP_3810 -0.5 -1.4 conserved protein of unknown function compare
PP_4874 -0.5 -0.7 50S ribosomal protein L9 compare
PP_5619 -0.5 -2.4 protein of unknown function compare
PP_4143 -0.5 -2.4 conserved protein of unknown function compare
PP_0502 -0.5 -2.7 conserved protein of unknown function compare
PP_1736 -0.5 -1.8 conserved protein of unknown function compare
PP_1362 -0.5 -1.7 pyruvate kinase II compare
PP_3903 -0.5 -0.8 conserved protein of unknown function compare
PP_1790 -0.5 -2.4 putative Acylneuraminate cytidylyltransferase compare
PP_5352 -0.5 -3.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3365 -0.5 -1.0 Acetolactate synthase compare
PP_2497 -0.5 -1.1 conserved protein of unknown function compare
PP_5621 -0.5 -1.3 protein of unknown function compare
PP_5029 -0.5 -3.8 N-formylglutamate deformylase compare
PP_3487 -0.5 -1.6 conserved exported protein of unknown function compare
PP_3034 -0.5 -1.2 putative Regulator protein compare
PP_1269 -0.5 -0.7 Universal stress protein family compare
PP_1011 -0.5 -2.9 glucokinase compare
PP_3808 -0.5 -1.0 Antibiotic synthesis protein MbtH compare
PP_4699 -0.5 -1.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5015 -0.5 -1.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5271 -0.5 -2.5 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_3359 -0.5 -1.0 putative Hydroxycinnamic acid degradation regulator compare
PP_2104 -0.5 -1.9 conserved membrane protein of unknown function compare
PP_1799 -0.5 -3.9 GDP-mannose 4,6-dehydratase compare
PP_5528 -0.5 -0.6 conserved protein of unknown function compare
PP_3916 -0.5 -1.1 conserved protein of unknown function compare
PP_4811 -0.5 -1.7 Gamma-glutamyl phosphate reductase compare
PP_1045 -0.5 -1.3 Type II secretion pathway protein XcpP compare
PP_2137 -0.5 -1.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_1226 -0.5 -1.8 pre-queuosine 0 synthase compare
PP_3333 -0.5 -1.5 conserved protein of unknown function compare
PP_1804 -0.5 -3.2 Glycosyl transferase WbpL compare
PP_2932 -0.5 -3.3 Amidase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms