Experiment set10IT025 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_His

200 most important genes:

  gene name fitness t score description  
PP_4890 -6.7 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_4723 -6.1 -13.6 Carbamoyl-phosphate synthase large chain compare
PP_0967 -5.9 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -5.7 -6.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5015 -5.2 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0292 -5.2 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -5.0 -13.1 Histidinol dehydrogenase compare
PP_4999 -4.9 -3.4 dihydroorotase-like protein compare
PP_0293 -4.9 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -4.5 -7.4 Carbamoyl-phosphate synthase small chain compare
PP_5095 -4.3 -2.9 pyrroline-5-carboxylate reductase compare
PP_0965 -4.1 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -4.1 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -4.0 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0735 -3.9 -3.8 molybdopterin-synthase adenylyltransferase compare
PP_0291 -3.1 -4.5 conserved protein of unknown function compare
PP_4700 -3.0 -2.0 pantothenate synthetase compare
PP_2337 -3.0 -3.4 aconitate isomerase compare
PP_1231 -2.7 -8.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1664 -2.6 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4122 -2.5 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0787 -2.5 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1912 -2.3 -6.0 Phosphate acyltransferase compare
PP_1994 -2.2 -3.2 tRNA pseudouridine (38-40)synthase compare
PP_0691 -2.2 -3.6 Glutamate 5-kinase compare
PP_0164 -2.0 -8.4 conserved protein of unknown function compare
PP_4782 -2.0 -6.5 Phosphomethylpyrimidine kinase compare
PP_4121 -2.0 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PP_1233 -1.8 -5.6 sulfurtransferase compare
PP_4271 -1.8 -1.6 conserved protein of unknown function compare
PP_3946 -1.8 -2.1 HTH-type transcriptional repressor NicR compare
PP_2336 -1.7 -4.1 aconitate hydratase 1 compare
PP_4909 -1.6 -5.6 phosphoserine phosphatase compare
PP_4129 -1.6 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0888 -1.6 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_2378 -1.6 -2.6 Fe/S biogenesis protein NfuA compare
PP_5104 -1.6 -6.8 thiazole synthase compare
PP_1826 -1.6 -3.3 Hydrolase, isochorismatase family compare
PP_0339 -1.5 -3.8 Pyruvate dehydrogenase E1 component compare
PP_1022 -1.5 -4.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4120 -1.5 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_2615 -1.5 -2.7 hemolysin-coregulated protein compare
PP_4130 -1.5 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1426 -1.4 -8.3 L-aspartate oxidase compare
PP_5331 -1.4 -4.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4917 -1.4 -3.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4124 -1.3 -4.5 NADH-quinone oxidoreductase subunit G compare
PP_1353 -1.3 -2.2 conserved membrane protein of unknown function compare
PP_4696 -1.3 -4.3 Nitrogen regulation protein NR(I) compare
PP_1410 -1.3 -1.9 conserved protein of unknown function compare
PP_0393 -1.3 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1824 -1.3 -2.0 Smr domain protein compare
PP_0513 -1.2 -2.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4131 -1.2 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_5706 -1.2 -2.2 Sec translocation complex - SecG subunit compare
PP_4922 -1.2 -6.7 Phosphomethylpyrimidine synthase compare
PP_1734 -1.1 -2.2 Probable septum site-determining protein MinC compare
PP_0832 -1.1 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2929 -1.1 -6.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0801 -1.1 -1.6 conserved exported protein of unknown function compare
PP_0035 -1.1 -1.9 putative bactoprenol-linked glycose transferase compare
PP_1237 -1.1 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1348 -1.1 -3.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2087 -1.1 -1.7 CmpX protein compare
PP_4066 -1.1 -3.2 methylglutaconyl-CoA hydratase compare
PP_0362 -1.0 -6.9 Biotin synthase compare
PP_3245 -1.0 -1.6 conserved protein of unknown function compare
PP_2334 -1.0 -3.7 2-methylisocitrate lyase compare
PP_4004 -1.0 -2.7 DNA translocase FtsK compare
PP_1097 -1.0 -1.6 Methionine--tRNA ligase compare
PP_5346 -1.0 -5.1 pyruvate carboxylase subunit B compare
PP_4546 -1.0 -3.2 ATP-dependent helicase HrpA compare
PP_5327 -1.0 -5.1 putative phosphate ABC transporter, permease subunit compare
PP_5347 -1.0 -5.7 pyruvate carboxylase subunit A compare
PP_4620 -0.9 -4.7 Fumarylacetoacetase compare
PP_5348 -0.9 -4.9 Transcriptional regulator, LysR family compare
PP_0218 -0.9 -5.5 Sensory box protein compare
PP_5217 -0.9 -7.2 Polyphosphate kinase compare
PP_5705 -0.9 -2.2 protein of unknown function compare
PP_2999 -0.9 -1.5 Glyoxalase family protein compare
PP_2387 -0.9 -1.5 conserved protein of unknown function compare
PP_0758 -0.9 -3.4 conserved protein of unknown function compare
PP_0184 -0.9 -3.1 Argininosuccinate lyase compare
PP_1986 -0.9 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_5328 -0.9 -2.2 putative phosphate transport system permease protein compare
PP_0195 -0.9 -1.9 conserved protein of unknown function compare
PP_0274 -0.9 -1.1 putative transcriptional regulator containing HTH domain compare
PP_3926 -0.9 -2.0 short-chain dehydrogenase compare
PP_4993 -0.9 -2.9 Glutathione synthetase compare
PP_4787 -0.9 -1.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2335 -0.9 -5.5 methylcitrate synthase compare
PP_2928 -0.9 -3.4 Saccharopine dehydrogenase compare
PP_1892 -0.9 -2.3 conserved protein of unknown function compare
PP_3866 -0.8 -2.5 conserved protein of unknown function compare
PP_0366 -0.8 -4.1 dethiobiotin synthetase compare
PP_1468 -0.8 -2.3 Tyrosine recombinase XerD compare
PP_4126 -0.8 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_2215 -0.8 -3.3 acetyl-CoA acetyltransferase compare
PP_3244 -0.8 -2.9 Magnesium transporter, MgtC family compare
PP_5329 -0.8 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5309 -0.8 -1.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1215 -0.8 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4964 -0.8 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5600 -0.8 -1.8 conserved protein of unknown function compare
PP_2302 -0.8 -3.1 DNA-binding, ATP-dependent protease compare
PP_4619 -0.8 -3.4 Maleylacetoacetate isomerase compare
PP_4897 -0.8 -3.3 N-acetylmuramoyl-L-alanine amidase compare
PP_3286 -0.8 -3.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2899 -0.8 -1.2 conserved exported protein of unknown function compare
PP_3105 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_5580 -0.7 -2.0 protein of unknown function compare
PP_1788 -0.7 -1.3 conserved protein of unknown function compare
PP_1328 -0.7 -1.7 Protein MraZ compare
PP_5483 -0.7 -1.4 conserved protein of unknown function compare
PP_2088 -0.7 -2.8 RNA polymerase sigma factor SigX compare
PP_5221 -0.7 -2.7 conserved protein of unknown function, UPF0178 family compare
PP_5121 -0.7 -1.5 conserved exported protein of unknown function compare
PP_0834 -0.7 -0.7 Sec translocation complex subunit YajC compare
PP_3365 -0.7 -1.1 Acetolactate synthase compare
PP_1783 -0.7 -0.6 dTDP-glucose pyrophosphorylase compare
PP_0365 -0.7 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3819 -0.7 -3.9 glutathione reductase (NADPH) compare
PP_4726 -0.7 -1.6 Chaperone protein DnaJ compare
PP_4984 -0.7 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2903 -0.7 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4133 -0.7 -1.9 Transcriptional regulator-related protein compare
PP_3417 -0.7 -3.3 D-gluconate transporter compare
PP_5338 -0.7 -1.2 aspartate ammonia-lyase compare
PP_5155 -0.6 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1045 -0.6 -1.2 Type II secretion pathway protein XcpP compare
PP_1048 -0.6 -1.4 putative protein secretion protein for export compare
PP_4348 -0.6 -2.5 putative Cystathionine beta-lyase compare
PP_4008 -0.6 -2.8 ATP-dependent serine protease compare
PP_5227 -0.6 -2.7 diaminopimelate decarboxylase compare
PP_0363 -0.6 -4.2 8-amino-7-oxononanoate synthase compare
PP_0846 -0.6 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_5270 -0.6 -2.1 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0565 -0.6 -2.0 putative enzyme compare
PP_5337 -0.6 -2.7 LysR family transcriptional regulator compare
PP_4213 -0.6 -1.1 putative dipeptidase compare
PP_1493 -0.6 -1.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3930 -0.6 -1.7 conserved exported protein of unknown function compare
PP_0512 -0.6 -1.7 hypothetical protein compare
PP_0065 -0.6 -1.7 NAD-binding component of TrK potassium transporter compare
PP_2878 -0.6 -1.2 conserved protein of unknown function compare
PP_0848 -0.6 -1.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2514 -0.6 -2.5 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_5279 -0.6 -1.4 conserved protein of unknown function compare
PP_4387 -0.6 -1.6 conserved exported protein of unknown function compare
PP_4054 -0.6 -1.6 conserved protein of unknown function compare
PP_2027 -0.6 -2.4 conserved exported protein of unknown function compare
PP_1609 -0.6 -1.4 conserved protein of unknown function compare
PP_2429 -0.6 -0.7 putative Membrane protein compare
PP_5508 -0.6 -0.9 conserved protein of unknown function compare
PP_4396 -0.6 -1.5 conserved protein of unknown function compare
PP_0976 -0.6 -3.0 Ribosomal RNA large subunit methyltransferase F compare
PP_0821 -0.6 -2.1 conserved exported protein of unknown function compare
PP_4196 -0.6 -0.9 conserved exported protein of unknown function compare
PP_1079 -0.6 -3.1 Ornithine carbamoyltransferase compare
PP_1015 -0.6 -3.7 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1374 -0.6 -2.5 conserved protein of unknown function compare
PP_1011 -0.6 -3.5 glucokinase compare
PP_3197 -0.6 -2.0 Glyoxalase family protein compare
PP_0872 -0.6 -2.6 Peptide chain release factor 3 compare
PP_2214 -0.6 -1.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0040 -0.6 -1.7 hypothetical protein compare
PP_3731 -0.6 -3.5 Transcriptional regulator, TetR family compare
PP_4204 -0.6 -2.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1016 -0.5 -3.2 mannose/glucose ABC transporter, permease protein conserved
PP_1216 -0.5 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5271 -0.5 -3.1 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_1993 -0.5 -3.7 putative motility protein fimV compare
PP_1017 -0.5 -2.4 mannose/glucose ABC transporter, permease protein conserved
PP_4143 -0.5 -2.4 conserved protein of unknown function compare
PP_0497 -0.5 -2.2 Transcriptional regulator, Cro/CI family compare
PP_4288 -0.5 -1.9 ureidoglycolate lyase compare
PP_5229 -0.5 -2.2 conserved protein of unknown function compare
PP_5274 -0.5 -1.4 conserved protein of unknown function compare
PP_3320 -0.5 -2.3 conserved protein of unknown function compare
PP_3419 -0.5 -2.1 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_2307 -0.5 -1.4 conserved protein of unknown function compare
PP_1673 -0.5 -2.9 cobyrinate a,c-diamide synthase compare
PP_4340 -0.5 -2.0 response regulator for chemotactic signal transduction compare
PP_4671 -0.5 -2.1 conserved exported protein of unknown function compare
PP_5659 -0.5 -1.0 protein of unknown function compare
PP_0261 -0.5 -2.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4669 -0.5 -1.3 OmpA family protein compare
PP_t10 -0.5 -1.3 tRNA-Pro compare
PP_2130 -0.5 -3.2 putative Soluble lytic transglycosylase compare
PP_2718 -0.5 -1.7 arsenic resistance transcriptional regulator compare
PP_2169 -0.5 -2.9 tRNA-dihydrouridine synthase A compare
PP_3821 -0.5 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2110 -0.5 -1.4 putative ribosomal large subunit pseudouridine synthase compare
PP_1428 -0.5 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_2908 -0.5 -2.0 DNA-binding transcriptional repressor compare
PP_5423 -0.5 -1.3 conserved membrane protein of unknown function compare
PP_1763 -0.5 -1.7 putative oxidoreductase compare
PP_2768 -0.5 -1.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5295 -0.5 -0.9 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms