Experiment set10IT024 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Gly

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.4 -9.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.0 -8.9 Carbamoyl-phosphate synthase small chain compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_5095 -4.2 -2.8 pyrroline-5-carboxylate reductase compare
PP_0787 -3.9 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1231 -3.8 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1237 -3.0 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0164 -2.5 -8.8 conserved protein of unknown function compare
PP_2402 -2.4 -2.8 putative Sensor histidine kinase compare
PP_0691 -2.3 -4.6 Glutamate 5-kinase compare
PP_4700 -2.3 -2.7 pantothenate synthetase compare
PP_4909 -2.1 -5.8 phosphoserine phosphatase compare
PP_1912 -2.1 -6.4 Phosphate acyltransferase compare
PP_0339 -2.1 -3.1 Pyruvate dehydrogenase E1 component compare
PP_1734 -2.0 -2.4 Probable septum site-determining protein MinC compare
PP_0393 -1.9 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4726 -1.9 -3.3 Chaperone protein DnaJ compare
PP_4364 -1.8 -6.0 putative Anti-sigma F factor antagonist compare
PP_4696 -1.8 -4.9 Nitrogen regulation protein NR(I) compare
PP_4943 -1.8 -2.3 putative Glycosyl transferase compare
PP_4910 -1.7 -2.3 conserved protein of unknown function compare
PP_1233 -1.7 -3.9 sulfurtransferase compare
PP_5155 -1.6 -6.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2928 -1.6 -7.0 Saccharopine dehydrogenase compare
PP_4268 -1.6 -1.9 nucleoid-associated broad specificity regulator compare
PP_4782 -1.5 -5.1 Phosphomethylpyrimidine kinase compare
PP_4902 -1.5 -3.0 Oligoribonuclease compare
PP_0735 -1.5 -3.4 molybdopterin-synthase adenylyltransferase compare
PP_5338 -1.5 -2.2 aspartate ammonia-lyase compare
PP_1426 -1.5 -8.5 L-aspartate oxidase compare
PP_2336 -1.4 -3.6 aconitate hydratase 1 compare
PP_4917 -1.4 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5028 -1.4 -3.7 proline iminopeptidase compare
PP_0848 -1.4 -2.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4130 -1.3 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4124 -1.3 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_5104 -1.3 -6.4 thiazole synthase compare
PP_5216 -1.3 -3.1 exopolyphosphatase compare
PP_1468 -1.3 -2.7 Tyrosine recombinase XerD compare
PP_3821 -1.3 -6.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1367 -1.3 -4.1 formyltetrahydrofolate hydrolase compare
PP_4120 -1.2 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_1629 -1.2 -4.7 Protein RecA compare
PP_1428 -1.2 -2.2 Sigma factor AlgU negative regulatory protein compare
PP_0291 -1.2 -2.6 conserved protein of unknown function compare
PP_2414 -1.2 -1.8 conserved exported protein of unknown function compare
PP_1609 -1.2 -2.7 conserved protein of unknown function compare
PP_5600 -1.2 -1.5 conserved protein of unknown function compare
PP_1216 -1.1 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2929 -1.1 -6.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2302 -1.1 -3.8 DNA-binding, ATP-dependent protease compare
PP_1493 -1.1 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2378 -1.1 -1.8 Fe/S biogenesis protein NfuA compare
PP_1142 -1.1 -1.5 conserved protein of unknown function compare
PP_5014 -1.1 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0513 -1.0 -1.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1022 -1.0 -3.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0362 -1.0 -6.9 Biotin synthase compare
PP_4129 -1.0 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1353 -1.0 -1.8 conserved membrane protein of unknown function compare
PP_2217 -1.0 -3.5 enoyl-CoA hydratase compare
PP_4922 -1.0 -5.8 Phosphomethylpyrimidine synthase compare
PP_4895 -1.0 -2.3 tRNA dimethylallyltransferase compare
PP_2379 -1.0 -4.9 putative cytochrome oxidase biogenesis protein compare
PP_1362 -0.9 -2.2 pyruvate kinase II compare
PP_3365 -0.9 -1.5 Acetolactate synthase compare
PP_3417 -0.9 -4.2 D-gluconate transporter compare
PP_0967 -0.9 -5.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5045 -0.9 -2.6 tRNA sulfurtransferase compare
PP_0888 -0.9 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_5230 -0.9 -2.3 Tyrosine recombinase XerC compare
PP_0966 -0.9 -5.1 Histidinol dehydrogenase compare
PP_5331 -0.9 -2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_3481 -0.8 -2.0 conserved exported protein of unknown function compare
PP_2214 -0.8 -2.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1348 -0.8 -3.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3094 -0.8 -2.5 conserved exported protein of unknown function compare
PP_5310 -0.8 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_5328 -0.8 -2.4 putative phosphate transport system permease protein compare
PP_0794 -0.8 -3.2 1-phosphofructokinase monomer compare
PP_0218 -0.8 -5.4 Sensory box protein compare
PP_0289 -0.8 -3.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5217 -0.8 -6.3 Polyphosphate kinase compare
PP_5248 -0.8 -1.5 putative hydrolase compare
PP_1826 -0.8 -1.4 Hydrolase, isochorismatase family compare
PP_0365 -0.8 -4.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0040 -0.8 -2.3 hypothetical protein compare
PP_0616 -0.8 -2.8 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_1635 -0.8 -2.0 DNA-binding response regulator compare
PP_5346 -0.8 -4.4 pyruvate carboxylase subunit B compare
PP_0914 -0.8 -5.3 GGDEF domain protein compare
PP_2333 -0.8 -3.9 GntR family transcriptional regulator compare
PP_2253 -0.8 -1.0 Transcriptional regulator, GntR family compare
PP_1097 -0.8 -1.3 Methionine--tRNA ligase compare
PP_3286 -0.7 -2.6 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4875 -0.7 -2.8 conserved membrane protein of unknown function compare
PP_5100 -0.7 -1.7 dITP/XTP pyrophosphatase compare
PP_5093 -0.7 -1.0 twitching motility protein compare
PP_4204 -0.7 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1079 -0.7 -3.7 Ornithine carbamoyltransferase compare
PP_t10 -0.7 -1.2 tRNA-Pro compare
PP_4890 -0.7 -2.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -0.7 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -0.7 -2.6 Argininosuccinate lyase compare
PP_3447 -0.7 -1.1 conserved membrane protein of unknown function compare
PP_4126 -0.7 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_3726 -0.7 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_2196 -0.7 -0.9 agmatinase compare
PP_4263 -0.7 -2.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1512 -0.7 -2.5 conserved protein of unknown function compare
PP_5705 -0.7 -1.4 protein of unknown function compare
PP_3241 -0.7 -1.2 conserved exported protein of unknown function compare
PP_3519 -0.7 -1.1 putative Lipoprotein compare
PP_4121 -0.7 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4897 -0.7 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PP_4004 -0.7 -1.9 DNA translocase FtsK compare
PP_4131 -0.7 -2.6 NADH-quinone oxidoreductase subunit N compare
PP_2335 -0.7 -3.8 methylcitrate synthase compare
PP_0290 -0.7 -3.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5271 -0.7 -3.6 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_4984 -0.7 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4835 -0.7 -1.4 conserved exported protein of unknown function compare
PP_5350 -0.7 -1.6 Transcriptional regulator, RpiR family compare
PP_2499 -0.7 -1.3 conserved protein of unknown function compare
PP_0364 -0.7 -4.4 pimeloyl-[acp] methyl ester esterase compare
PP_1020 -0.7 -1.9 putative glucose-6-phosphate 1-epimerase compare
PP_5347 -0.6 -4.3 pyruvate carboxylase subunit A compare
PP_0254 -0.6 -1.8 conserved protein of unknown function compare
PP_5324 -0.6 -1.8 Response regulator compare
PP_0832 -0.6 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0852 -0.6 -2.0 Transcriptional regulator, Cro/CI family compare
PP_0363 -0.6 -4.2 8-amino-7-oxononanoate synthase compare
PP_4799 -0.6 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5658 -0.6 -1.4 protein of unknown function compare
PP_2160 -0.6 -1.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5327 -0.6 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_1536 -0.6 -1.8 conserved protein of unknown function compare
PP_5157 -0.6 -3.2 conserved exported protein of unknown function compare
PP_0250 -0.6 -1.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1664 -0.6 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4892 -0.6 -2.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0440 -0.6 -1.6 Elongation factor Tu-A compare
PP_4620 -0.6 -4.2 Fumarylacetoacetase compare
PP_0834 -0.6 -1.0 Sec translocation complex subunit YajC compare
PP_5278 -0.6 -2.6 4-guanidinobutyraldehyde dehydrogenase compare
PP_5030 -0.6 -2.5 Imidazolonepropionase compare
PP_5198 -0.6 -2.0 conserved protein of unknown function compare
PP_0366 -0.6 -3.1 dethiobiotin synthetase compare
PP_3899 -0.6 -1.5 conserved protein of unknown function, hicB family compare
PP_0065 -0.6 -1.5 NAD-binding component of TrK potassium transporter compare
PP_4018 -0.6 -1.5 Acetyltransferase, GNAT family compare
PP_3730 -0.6 -1.2 Transcriptional regulatory protein AruR compare
PP_0512 -0.6 -1.8 hypothetical protein compare
PP_5241 -0.6 -1.6 DNA-binding response regulator, LuxR family compare
PP_1716 -0.6 -1.7 Transcriptional regulator, Cro/CI family compare
PP_3277 -0.6 -2.6 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_4964 -0.6 -1.6 D-erythrose 4-phosphate dehydrogenase compare
PP_5SB -0.6 -1.5 5S ribosomal RNA compare
PP_0939 -0.6 -2.4 Carbon-nitrogen hydrolase family protein compare
PP_4379 -0.6 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1691 -0.6 -1.4 conserved protein of unknown function compare
PP_4136 -0.6 -1.0 Transcriptional regulator, LuxR family compare
PP_3591 -0.6 -2.7 Delta 1-piperideine-2-carboxylate reductase compare
PP_1571 -0.6 -2.1 conserved protein of unknown function compare
PP_3378 -0.6 -0.9 putative 2-ketogluconokinase compare
PP_3434 -0.6 -1.6 conserved protein of unknown function compare
PP_3320 -0.6 -2.0 conserved protein of unknown function compare
PP_0758 -0.6 -2.2 conserved protein of unknown function compare
PP_2306 -0.6 -1.7 conserved exported protein of unknown function compare
PP_3888 -0.6 -2.8 conserved protein of unknown function compare
PP_5441 -0.6 -1.3 protein of unknown function compare
PP_5594 -0.6 -1.0 conserved protein of unknown function compare
PP_2611 -0.6 -2.1 membrane protein of unknown function compare
PP_2131 -0.5 -2.9 DNA-binding ATPase involved in replication compare
PP_2504 -0.5 -1.3 putative tautomerase K2 compare
PP_0792 -0.5 -2.8 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_5229 -0.5 -2.1 conserved protein of unknown function compare
PP_0117 -0.5 -2.7 Zn(2+) ABC transporter - permease subunit compare
PP_4355 -0.5 -1.2 flagellar export apparatus subunit compare
PP_2835 -0.5 -1.4 putative oxidoreductase compare
PP_5185 -0.5 -2.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4569 -0.5 -1.5 conserved protein of unknown function compare
PP_5106 -0.5 -1.6 conserved inner membrane protein compare
PP_2927 -0.5 -2.0 conserved protein of unknown function compare
PP_5352 -0.5 -3.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2836 -0.5 -2.4 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_1410 -0.5 -1.0 conserved protein of unknown function compare
PP_3946 -0.5 -0.8 HTH-type transcriptional repressor NicR compare
PP_3392 -0.5 -0.7 conserved protein of unknown function compare
PP_5279 -0.5 -1.6 conserved protein of unknown function compare
PP_2654 -0.5 -2.6 putative Glutathione S-transferase compare
PP_0989 -0.5 -1.2 glycine cleavage system H protein 1 compare
PP_1011 -0.5 -3.2 glucokinase compare
PP_4517 -0.5 -0.9 conserved protein of unknown function compare
PP_2210 -0.5 -1.8 LysR family transcriptional regulator compare
PP_0566 -0.5 -0.8 translation-related factor compare
PP_0874 -0.5 -1.1 conserved protein of unknown function compare
PP_0001 -0.5 -0.8 probable chromosome-partitioning protein compare
PP_4143 -0.5 -1.5 conserved protein of unknown function compare
PP_1012 -0.5 -2.1 DNA-binding response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms