Experiment set10IT024 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Gly

200 most detrimental genes:

  gene name fitness t score description  
PP_5017 +1.1 2.0 Sec-independent protein translocase protein TatB compare
PP_4785 +1.1 5.6 conserved exported protein of unknown function compare
PP_4099 +1.0 9.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4273 +1.0 2.7 Transcriptional regulator, MerR family compare
PP_0025 +1.0 2.5 hypothetical protein compare
PP_5267 +1.0 2.4 putative cytochrome c5 compare
PP_1650 +0.9 9.2 Sensor protein GacS compare
PP_1623 +0.9 6.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_1656 +0.9 5.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1310 +0.9 2.9 conserved hypothetical protein compare
PP_1122 +0.8 1.4 OmpA family protein compare
PP_2403 +0.8 1.7 Chemotaxis protein CheY compare
PP_1655 +0.8 4.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0313 +0.8 2.3 putative electron transfer flavoprotein beta subunit compare
PP_4874 +0.8 0.7 50S ribosomal protein L9 compare
PP_5008 +0.8 1.9 Poly granule-associated protein compare
PP_0711 +0.7 2.3 putative hydrolase compare
PP_1981 +0.7 3.4 tRNA-dihydrouridine synthase C compare
PP_5453 +0.7 1.5 conserved protein of unknown function compare
PP_4213 +0.7 1.7 putative dipeptidase compare
PP_2581 +0.7 1.7 conserved protein of unknown function compare
PP_5604 +0.7 1.8 putative subtilisin-like serine protease compare
PP_2720 +0.7 1.1 conserved protein of unknown function compare
PP_0593 +0.7 0.9 putative ribosome-binding factor compare
PP_3098 +0.7 1.2 conserved protein of unknown function compare
PP_5058 +0.7 3.7 Carboxy-terminal-processing protease compare
PP_4271 +0.7 1.2 conserved protein of unknown function compare
PP_5519 +0.7 1.4 conserved protein of unknown function of phage origin compare
PP_1058 +0.7 5.9 conserved protein of unknown function compare
PP_5575 +0.7 1.4 conserved protein of unknown function compare
PP_1008 +0.7 3.0 RNA polymerase subunit sigma-24 compare
PP_5456 +0.6 0.9 conserved protein of unknown function compare
PP_0283 +0.6 2.1 Arginine/ornithine transport ATP-binding protein AotP compare
PP_1268 +0.6 1.6 putative HtrA suppressor protein sohA compare
PP_4981 +0.6 1.5 polyisoprene-binding protein, acidic stress response factor compare
PP_1255 +0.6 3.1 putative cis-4-hydroxy-D-proline oxidase compare
PP_2147 +0.6 1.8 conserved exported protein of unknown function compare
PP_4238 +0.6 2.0 conserved protein of unknown function compare
PP_0406 +0.6 3.1 Nucleotidyltransferase family protein compare
PP_5571 +0.6 1.2 conserved protein of unknown function compare
PP_2958 +0.6 2.6 Glutaredoxin compare
PP_0643 +0.6 1.8 protein of unknown function compare
PP_4464 +0.6 2.7 Transcriptional regulator, LysR family compare
PP_4502 +0.6 2.8 putative enzyme compare
PP_0630 +0.6 1.3 DNA gyrase inhibitor YacG compare
PP_3307 +0.6 1.5 conserved protein of unknown function compare
PP_4848 +0.6 1.4 Curved DNA-binding protein compare
PP_2847 +0.6 1.8 Urease accessory protein UreJ compare
PP_3199 +0.6 2.3 putative Monooxygenase compare
PP_4178 +0.6 3.0 Dienelactone hydrolase family protein compare
PP_5253 +0.6 1.6 Arylesterase compare
PP_2370 +0.6 2.0 conserved protein of unknown function compare
PP_3000 +0.6 2.6 MaoC domain protein compare
PP_4792 +0.5 1.9 conserved exported protein of unknown function compare
PP_3824 +0.5 1.5 conserved exported protein of unknown function compare
PP_1575 +0.5 2.0 conserved protein of unknown function compare
PP_1028 +0.5 2.7 Transcriptional regulator, LysR family compare
PP_2384 +0.5 2.9 conserved membrane protein of unknown function compare
PP_2103 +0.5 2.0 conserved protein of unknown function compare
PP_4247 +0.5 1.0 Exonuclease compare
PP_3179 +0.5 1.8 Transcriptional regulator, LysR family compare
PP_5505 +0.5 1.8 conserved transmembrane protein of unknown function compare
PP_4561 +0.5 0.7 stress response protein compare
PP_2087 +0.5 1.0 CmpX protein compare
PP_0957 +0.5 1.6 D-arabinose 5-phosphate isomerase compare
PP_1739 +0.5 2.4 conserved membrane protein of unknown function compare
PP_1110 +0.5 1.2 serine acetyltransferase compare
PP_3915 +0.5 2.8 conserved protein of unknown function compare
PP_3610 +0.5 2.4 conserved protein of unknown function compare
PP_2772 +0.5 1.9 putative Monooxygenase compare
PP_2568 +0.5 1.0 Ring-cleaving dioxygenase compare
PP_2090 +0.5 2.0 Uroporphyrinogen-III C-methyltransferase compare
PP_2803 +0.5 2.5 1,3-propanediol dehydrogenase compare
PP_4504 +0.5 0.5 conserved exported protein of unknown function compare
PP_2510 +0.5 0.8 conserved protein of unknown function compare
PP_2759 +0.5 2.0 ribose ABC transporter - ATP-binding subunit compare
PP_5480 +0.5 1.8 conserved exported protein of unknown function compare
PP_5628 +0.5 1.5 conserved protein of unknown function compare
PP_4925 +0.5 2.1 conserved protein of unknown function compare
PP_2793 +0.5 1.5 Acyl-CoA dehydrogenase family protein compare
PP_5272 +0.5 2.0 conserved protein of unknown function compare
PP_0772 +0.5 2.6 Metallo-beta-lactamase family protein compare
PP_0287 +0.5 2.7 conserved exported protein of unknown function compare
PP_3541 +0.5 1.0 Transporter, MgtC family compare
PP_1630 +0.5 2.4 Regulatory protein RecX compare
PP_0181 +0.5 2.5 conserved protein of unknown function compare
PP_2723 +0.5 2.1 Uncharacterized oxidoreductase YhdF compare
PP_0938 +0.5 3.0 conserved protein of unknown function compare
PP_2204 +0.5 1.9 copper resistance protein B compare
PP_4529 +0.5 1.6 conserved protein of unknown function compare
PP_5471 +0.5 0.6 putative response regulator receiver protein compare
PP_3880 +0.5 1.1 conserved exported protein of unknown function compare
PP_2106 +0.5 2.7 putative Ammonium transporter compare
PP_4122 +0.5 0.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5007 +0.5 1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2503 +0.5 1.1 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_1713 +0.5 0.6 Transcriptional regulator PcaQ compare
PP_5558 +0.5 1.8 putative transcriptional xre family of phage origin compare
PP_5232 +0.5 1.3 conserved protein of unknown function compare
PP_0145 +0.4 2.0 Na+/Pi-cotransporter compare
PP_2507 +0.4 2.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1729 +0.4 0.4 conserved protein of unknown function compare
PP_4373 +0.4 3.3 Transcriptional regulator FleQ compare
PP_3404 +0.4 1.7 conserved protein of unknown function compare
PP_3328 +0.4 1.0 putative Ring-cleaving dioxygenase compare
PP_5711 +0.4 1.3 protein of unknown function compare
PP_3771 +0.4 1.5 conserved protein of unknown function compare
PP_5176 +0.4 1.9 conserved protein of unknown function compare
PP_4444 +0.4 2.3 transposase compare
PP_1898 +0.4 1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0574 +0.4 3.3 DNA-binding response regulator, LuxR family compare
PP_3398 +0.4 1.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3002 +0.4 1.8 shikimate dehydrogenase-related enzyme compare
PP_1109 +0.4 3.4 Transcriptional regulator, GntR family compare
PP_3285 +0.4 2.7 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_1864 +0.4 1.6 conserved protein of unknown function compare
PP_1824 +0.4 1.0 Smr domain protein compare
PP_2777 +0.4 1.8 putative Acyl carrier protein compare
PP_4952 +0.4 0.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4171 +0.4 3.7 conserved exported protein of unknown function compare
PP_3035 +0.4 1.2 conserved protein of unknown function compare
PP_3338 +0.4 1.8 putative cytochrome bd-type quinol oxidase compare
PP_5556 +0.4 1.9 putative bacteriophage lysis protein compare
PP_0246 +0.4 0.7 two-component system DNA-binding response transcriptional dual regulator compare
PP_2299 +0.4 1.2 Trigger factor compare
PP_2592 +0.4 1.3 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_3118 +0.4 2.3 DNA linked enzyme involved in DNA repair compare
PP_1113 +0.4 2.6 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3371 +0.4 1.8 Sensor histidine kinase compare
PP_3756 +0.4 1.5 TetR family transcriptional regulator compare
PP_2540 +0.4 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5051 +0.4 1.1 conserved protein of unknown function compare
PP_3729 +0.4 1.9 Periplasmic amino acid-binding protein-related protein compare
PP_1111 +0.4 2.7 putative Synthetase compare
PP_3146 +0.4 2.6 putative Oxidoreductase compare
PP_0190 +0.4 2.3 putative disulfide bond formation protein B compare
PP_2862 +0.4 2.5 Undecaprenyl-diphosphatase compare
PP_0725 +0.4 2.2 conserved hypothetical TPR repeat protein compare
PP_0893 +0.4 1.4 ThiJ/PfpI family protein compare
PP_2923 +0.4 1.7 conserved protein of unknown function compare
PP_1779 +0.4 1.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4656 +0.4 2.6 protocatechuate 3,4-dioxygenase beta chain compare
PP_1979 +0.4 1.5 putative Hydrolase compare
PP_4528 +0.4 1.3 conserved protein of unknown function compare
PP_3204 +0.4 1.6 conserved protein of unknown function compare
PP_1271 +0.4 2.1 putative Multidrug efflux MFS transporter compare
PP_2815 +0.4 2.0 conserved protein of unknown function compare
PP_3074 +0.4 1.7 D-beta-hydroxybutyrate permease compare
PP_1926 +0.4 1.1 putative phosphotyrosine-protein phosphatase compare
PP_0948 +0.4 1.2 Phosphocarrier protein HPr compare
PP_1473 +0.4 1.6 conserved protein of unknown function compare
PP_3226 +0.4 2.1 Acyl-CoA dehydrogenase-related protein compare
PP_2122 +0.4 1.6 molybdenum cofactor biosynthesis protein B compare
PP_3333 +0.4 1.6 conserved protein of unknown function compare
PP_2319 +0.4 1.5 conserved protein of unknown function compare
PP_5678 +0.4 1.8 protein of unknown function compare
PP_1903 +0.4 1.5 putative phosphotyrosine-protein phosphatase compare
PP_3766 +0.4 0.5 Lactoylglutathione lyase compare
PP_1987 +0.4 1.1 Methlytransferase, UbiE/COQ5 family compare
PP_5553 +0.4 2.0 conserved protein of unknown function compare
PP_3100 +0.4 1.5 conserved protein of unknown function compare
PP_5367 +0.4 1.5 Transketolase domain protein compare
PP_0807 +0.4 1.6 DNA-binding transcriptional dual regulator (NO) compare
PP_3264 +0.4 2.2 cardiolipin synthase 2 compare
PP_3369 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_1130 +0.4 2.2 conserved protein of unknown function compare
PP_2137 +0.4 1.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_1550 +0.4 0.8 Transcriptional regulator, Cro/CI family compare
PP_2401 +0.4 1.8 conserved membrane protein of unknown function compare
PP_4994 +0.4 1.5 conserved protein of unknown function compare
PP_4768 +0.4 1.3 Exonuclease compare
PP_2361 +0.4 2.2 putative chaperone protein compare
PP_0945 +0.4 1.8 conserved protein of unknown function compare
PP_t49 +0.4 1.2 tRNA-Met compare
PP_4081 +0.4 2.0 putative type 4/6 secretion system compare
PP_5143 +0.4 1.8 conserved membrane protein of unknown function compare
PP_4229 +0.4 2.5 conserved protein of unknown function compare
PP_2740 +0.4 1.1 Transcriptional regulator, MerR family compare
PP_5073 +0.4 1.2 conserved exported protein of unknown function compare
PP_0509 +0.4 1.6 conserved protein of unknown function compare
PP_2132 +0.4 1.5 Universal stress protein compare
PP_0035 +0.4 1.2 putative bactoprenol-linked glycose transferase compare
PP_0276 +0.4 0.7 Transcriptional regulator, Cro/CI family compare
PP_1454 +0.4 1.0 conserved protein of unknown function compare
PP_1644 +0.4 1.9 NAD(P)H dehydrogenase (quinone) compare
PP_5675 +0.4 1.1 conserved protein of unknown function compare
PP_1021 +0.4 1.5 DNA-binding transcriptional regulator compare
PP_2748 +0.4 1.1 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5589 +0.4 1.7 protein of unknown function containing Rhs repeat-associated core domain compare
PP_5042 +0.4 1.5 conserved protein of unknown function compare
PP_4555 +0.4 1.6 conserved protein of unknown function compare
PP_2690 +0.4 2.0 conserved protein of unknown function compare
PP_5478 +0.3 1.6 conserved protein of unknown function compare
PP_0827 +0.3 1.1 putative phosphonate transport system permease protein PtxC compare
PP_4916 +0.3 1.3 putative esterase compare
PP_3219 +0.3 2.0 putative Alkansulfonate monooxygenase compare
PP_4226 +0.3 1.1 conserved protein of unknown function compare
PP_2067 +0.3 1.6 putative EmrB/QacA family drug resistance transporter compare
PP_2773 +0.3 0.7 conserved protein of unknown function compare
PP_0242 +0.3 2.0 Transcriptional regulator, TetR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms