Experiment set10IT022 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Glu

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.4 -11.5 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.8 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_4999 -5.0 -3.4 dihydroorotase-like protein compare
PP_0691 -4.5 -4.4 Glutamate 5-kinase compare
PP_1231 -3.4 -8.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2337 -2.6 -3.5 aconitate isomerase compare
PP_0787 -2.6 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5095 -2.5 -2.5 pyrroline-5-carboxylate reductase compare
PP_4700 -2.4 -2.8 pantothenate synthetase compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4964 -1.9 -4.0 D-erythrose 4-phosphate dehydrogenase compare
PP_0888 -1.9 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_5104 -1.8 -8.1 thiazole synthase compare
PP_4782 -1.8 -5.8 Phosphomethylpyrimidine kinase compare
PP_0339 -1.8 -4.0 Pyruvate dehydrogenase E1 component compare
PP_1664 -1.7 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_0735 -1.7 -3.3 molybdopterin-synthase adenylyltransferase compare
PP_1994 -1.6 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_1097 -1.6 -2.4 Methionine--tRNA ligase compare
PP_1426 -1.6 -10.0 L-aspartate oxidase compare
PP_2336 -1.6 -4.3 aconitate hydratase 1 compare
PP_4098 -1.5 -2.0 UvrABC system protein C compare
PP_1912 -1.5 -4.9 Phosphate acyltransferase compare
PP_1233 -1.4 -4.3 sulfurtransferase compare
PP_5331 -1.3 -3.6 Long-chain acyl-CoA thioester hydrolase compare
PP_1428 -1.3 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_5230 -1.3 -3.7 Tyrosine recombinase XerC compare
PP_0164 -1.3 -6.2 conserved protein of unknown function compare
PP_4696 -1.3 -3.9 Nitrogen regulation protein NR(I) compare
PP_1734 -1.2 -2.3 Probable septum site-determining protein MinC compare
PP_4131 -1.2 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_4902 -1.2 -2.7 Oligoribonuclease compare
PP_5486 -1.2 -2.6 conserved protein of unknown function compare
PP_1041 -1.2 -2.4 twin arginine protein export complex subunit compare
PP_4120 -1.2 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_t10 -1.2 -2.5 tRNA-Pro compare
PP_1237 -1.1 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4726 -1.1 -2.6 Chaperone protein DnaJ compare
PP_2928 -1.1 -5.0 Saccharopine dehydrogenase compare
PP_5329 -1.1 -4.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2379 -1.1 -4.4 putative cytochrome oxidase biogenesis protein compare
PP_1216 -1.1 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4124 -1.0 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_0362 -1.0 -6.7 Biotin synthase compare
PP_5350 -1.0 -2.4 Transcriptional regulator, RpiR family compare
PP_4701 -1.0 -1.1 glucose-6-phosphate isomerase compare
PP_4129 -1.0 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3417 -1.0 -3.8 D-gluconate transporter compare
PP_0366 -1.0 -5.2 dethiobiotin synthetase compare
PP_1733 -1.0 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_4620 -1.0 -6.2 Fumarylacetoacetase compare
PP_2378 -1.0 -1.6 Fe/S biogenesis protein NfuA compare
PP_1348 -0.9 -4.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1215 -0.9 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1629 -0.9 -4.2 Protein RecA compare
PP_2929 -0.9 -6.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0874 -0.9 -2.9 conserved protein of unknown function compare
PP_0832 -0.9 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3946 -0.9 -0.9 HTH-type transcriptional repressor NicR compare
PP_5327 -0.9 -4.9 putative phosphate ABC transporter, permease subunit compare
PP_5347 -0.9 -6.1 pyruvate carboxylase subunit A compare
PP_4922 -0.9 -5.6 Phosphomethylpyrimidine synthase compare
PP_0801 -0.9 -1.5 conserved exported protein of unknown function compare
PP_5338 -0.9 -1.9 aspartate ammonia-lyase compare
PP_1022 -0.8 -2.6 glucose 6-phosphate-1-dehydrogenase compare
PP_4909 -0.8 -3.3 phosphoserine phosphatase compare
PP_2214 -0.8 -3.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0218 -0.8 -5.4 Sensory box protein compare
PP_0833 -0.8 -1.3 queuine tRNA-ribosyltransferase compare
PP_1906 -0.8 -2.5 ribosomal large subunit pseudouridine synthase C compare
PP_5582 -0.8 -1.1 conserved protein of unknown function compare
PP_5155 -0.8 -3.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5028 -0.8 -2.5 proline iminopeptidase compare
PP_0292 -0.7 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0363 -0.7 -4.8 8-amino-7-oxononanoate synthase compare
PP_3819 -0.7 -4.7 glutathione reductase (NADPH) compare
PP_0065 -0.7 -1.9 NAD-binding component of TrK potassium transporter compare
PP_4121 -0.7 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4837 -0.7 -3.0 conserved protein of unknown function compare
PP_4122 -0.7 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5217 -0.7 -5.8 Polyphosphate kinase compare
PP_4130 -0.7 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0957 -0.7 -0.8 D-arabinose 5-phosphate isomerase compare
PP_4196 -0.7 -2.5 conserved exported protein of unknown function compare
PP_1986 -0.7 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_0962 -0.7 -2.3 toluene-tolerance protein compare
PP_0758 -0.7 -2.3 conserved protein of unknown function compare
PP_5393 -0.7 -1.1 putative metal-binding chaperone compare
PP_4126 -0.7 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_3926 -0.7 -1.8 short-chain dehydrogenase compare
PP_5348 -0.7 -4.4 Transcriptional regulator, LysR family compare
PP_0001 -0.7 -0.8 probable chromosome-partitioning protein compare
PP_5346 -0.7 -4.1 pyruvate carboxylase subunit B compare
PP_3061 -0.7 -3.1 conserved protein of unknown function compare
PP_5352 -0.7 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5279 -0.7 -2.1 conserved protein of unknown function compare
PP_4984 -0.7 -4.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3806 -0.7 -1.4 Hydrolase, isochorismatase family compare
PP_5337 -0.7 -2.3 LysR family transcriptional regulator compare
PP_0250 -0.6 -1.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4268 -0.6 -1.0 nucleoid-associated broad specificity regulator compare
PP_1396 -0.6 -2.0 conserved protein of unknown function compare
PP_0872 -0.6 -3.1 Peptide chain release factor 3 compare
PP_0345 -0.6 -2.5 putative Heptose kinase WapP compare
PP_0770 -0.6 -2.4 PemI-like protein compare
PP_2088 -0.6 -1.8 RNA polymerase sigma factor SigX compare
PP_4897 -0.6 -2.3 N-acetylmuramoyl-L-alanine amidase compare
PP_1214 -0.6 -1.2 putative transcriptional regulatory protein compare
PP_2334 -0.6 -2.6 2-methylisocitrate lyase compare
PP_4895 -0.6 -1.7 tRNA dimethylallyltransferase compare
PP_1143 -0.6 -3.5 3-hydroxyisobutyrate dehydrogenase family protein compare
PP_0120 -0.6 -2.9 putative zinc ABC transporter compare
PP_2970 -0.6 -2.0 conserved exported protein of unknown function compare
PP_5619 -0.6 -1.9 protein of unknown function compare
PP_4355 -0.6 -1.4 flagellar export apparatus subunit compare
PP_2302 -0.6 -2.7 DNA-binding, ATP-dependent protease compare
PP_1011 -0.6 -4.0 glucokinase compare
PP_2499 -0.6 -1.2 conserved protein of unknown function compare
PP_1410 -0.6 -1.2 conserved protein of unknown function compare
PP_4847 -0.6 -1.2 chaperone modulatory of CbpA co-chaperone protein compare
PP_0364 -0.6 -3.4 pimeloyl-[acp] methyl ester esterase compare
PP_4993 -0.6 -1.8 Glutathione synthetase compare
PP_0434 -0.6 -4.0 Anhydro-N-acetylmuramic acid kinase compare
PP_1208 -0.6 -1.1 conserved protein of unknown function, SlyX family compare
PP_0365 -0.6 -3.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5198 -0.6 -2.0 conserved protein of unknown function compare
PP_4917 -0.6 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1082 -0.6 -2.4 bacterioferritin compare
PP_0978 -0.6 -2.0 conserved protein of unknown function compare
PP_0377 -0.5 -1.4 coenzyme PQQ synthesis protein D compare
PP_0972 -0.5 -1.5 UPF0213 protein PP_0972 compare
PP_5SB -0.5 -1.7 5S ribosomal RNA compare
PP_4556 -0.5 -1.7 conserved protein of unknown function compare
PP_5324 -0.5 -1.1 Response regulator compare
PP_2842 -0.5 -2.3 urease accessory protein compare
PP_3935 -0.5 -1.5 conserved protein of unknown function compare
PP_5704 -0.5 -1.5 conserved protein of unknown function compare
PP_3081 -0.5 -1.8 conserved protein of unknown function compare
PP_5090 -0.5 -0.9 putative cell division protein compare
PP_1387 -0.5 -1.5 Probable HTH-type transcriptional regulator TtgR compare
PP_5229 -0.5 -2.0 conserved protein of unknown function compare
PP_4937 -0.5 -2.1 toluene tolerance protein compare
PP_0246 -0.5 -1.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_0819 -0.5 -1.7 conserved ferredoxin-like protein of unknown function compare
PP_1020 -0.5 -1.4 putative glucose-6-phosphate 1-epimerase compare
PP_4695 -0.5 -3.8 Sensory box histidine kinase compare
PP_0914 -0.5 -3.6 GGDEF domain protein compare
PP_0839 -0.5 -2.3 tRNA Cm32/Um32 methyltransferase compare
PP_4329 -0.5 -1.2 FlhB domain protein compare
PP_t13 -0.5 -1.7 tRNA-Lys compare
PP_3102 -0.5 -2.5 conserved protein of unknown function compare
PP_3506 -0.5 -1.9 Magnesium chelatase, subunit ChII compare
PP_3938 -0.5 -1.2 conserved protein of unknown function compare
PP_1346 -0.5 -2.4 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_3999 -0.5 -2.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2655 -0.5 -0.9 conserved protein of unknown function compare
PP_0963 -0.5 -1.8 putative BolA family protein compare
PP_2932 -0.5 -2.7 Amidase family protein compare
PP_1225 -0.5 -2.2 7-carboxy-7-deazaguanine synthase compare
PP_5143 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_1716 -0.5 -1.2 Transcriptional regulator, Cro/CI family compare
PP_5139 -0.5 -2.4 cadmium translocating P-type ATPase compare
PP_4336 -0.5 -2.4 flagellar motor rotation protein compare
PP_0184 -0.5 -1.9 Argininosuccinate lyase compare
PP_3773 -0.5 -1.5 conserved protein of unknown function compare
PP_0556 -0.5 -2.1 Acetoin catabolism protein compare
PP_5448 -0.5 -1.7 conserved protein of unknown function compare
PP_1218 -0.5 -2.2 putative acyl-CoA thioesterase compare
PP_5054 -0.5 -1.3 glutaredoxin 3 compare
PP_5107 -0.5 -1.9 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_4681 -0.5 -1.6 conserved protein of unknown function compare
PP_2615 -0.5 -1.5 hemolysin-coregulated protein compare
PP_2625 -0.5 -1.9 conserved exported protein of unknown function compare
PP_2441 -0.5 -1.8 conserved protein of unknown function compare
PP_1038 -0.5 -1.5 conserved protein of unknown function compare
PP_4720 -0.5 -1.6 putative RNA binding protein compare
PP_5202 -0.5 -1.2 putative cell division protein compare
PP_0683 -0.5 -1.6 conserved protein of unknown function compare
PP_5437 -0.5 -1.9 protein of unknown function compare
PP_3767 -0.5 -1.8 conserved protein of unknown function compare
PP_1988 -0.5 -2.5 3-isopropylmalate dehydrogenase compare
PP_0290 -0.5 -2.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5328 -0.5 -1.5 putative phosphate transport system permease protein compare
PP_2433 -0.5 -1.2 conserved protein of unknown function compare
PP_1074 -0.5 -1.6 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0513 -0.4 -1.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1124 -0.4 -1.2 conserved membrane protein of unknown function compare
PP_0188 -0.4 -1.9 putative Uroporphyrin-III C-methyltransferase compare
PP_4609 -0.4 -2.3 conserved membrane protein of unknown function compare
PP_4739 -0.4 -0.9 conserved protein of unknown function compare
PP_5271 -0.4 -2.5 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_4133 -0.4 -1.4 Transcriptional regulator-related protein compare
PP_4832 -0.4 -2.3 Precorrin-6x reductase compare
PP_5597 -0.4 -1.1 conserved protein of unknown function compare
PP_2307 -0.4 -1.5 conserved protein of unknown function compare
PP_2396 -0.4 -1.4 conserved exported protein of unknown function compare
PP_4814 -0.4 -1.0 ATP-dependent protease La domain protein compare
PP_0516 -0.4 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_4482 -0.4 -1.2 Transcriptional regulator, AraC family compare
PP_0939 -0.4 -2.3 Carbon-nitrogen hydrolase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms