Experiment set10IT022 for Escherichia coli BW25113

Compare to:

LB Aerobic with Ramoplanin 0.000125 mM

Genes with specific phenotypes:

  gene name fitness t score description  
b2742 nlpD -5.9 -8.1 predicted outer membrane lipoprotein (NCBI) compare
b4472 yhdP -5.9 -9.0 conserved membrane protein, predicted transporter (NCBI) compare
b4220 ytfM -5.9 -10.5 predicted outer membrane protein and surface antigen (NCBI) compare
b4221 ytfN -5.8 -11.9 hypothetical protein (NCBI) compare
b2893 dsbC -4.9 -6.7 protein disulfide isomerase II (NCBI) compare
b1856 yebA -4.9 -8.2 orf, hypothetical protein (VIMSS) compare
b0633 rlpA -4.7 -10.4 minor lipoprotein (NCBI) compare
b3472 b3472 -4.3 -9.5 orf, hypothetical protein (VIMSS) compare
b0742 ybgF -4.2 -7.0 hypothetical protein (NCBI) compare
b0434 yajG -4.2 -10.0 putative polymerase/proteinase (VIMSS) compare
b1249 cls -4.1 -6.9 cardiolipin synthetase (NCBI) compare
b0433 ampG -4.0 -18.0 muropeptide transporter (NCBI) compare
b3182 dacB -3.9 -15.3 D-alanyl-D-alanine carboxypeptidase (NCBI) compare
b3740 gidB -3.8 -14.2 glucose-inhibited division protein B (NCBI) compare
b0877 ybjX -3.6 -8.8 hypothetical protein (NCBI) compare
b3687 ibpA -3.6 -8.6 heat shock chaperone (NCBI) compare
b1782 mipA -3.5 -5.8 scaffolding protein for murein synthesizing machinery (NCBI) compare
b4316 fimC -2.8 -5.9 periplasmic chaperone, required for type 1 fimbriae (VIMSS) compare
b2813 mltA -2.7 -11.1 membrane-bound lytic murein transglycosylase A (NCBI) compare
b3529 yhjK -2.7 -14.9 predicted diguanylate cyclase (RefSeq) compare
b3527 yhjJ -2.6 -16.6 predicted zinc-dependent peptidase (NCBI) compare
b2811 ygdK -2.5 -5.1 predicted Fe-S metabolism protein (NCBI) compare
b4001 yjaH -2.5 -7.4 hypothetical protein (NCBI) compare
b1097 yceG -2.4 -7.8 predicted aminodeoxychorismate lyase (NCBI) compare
b2344 fadL -2.4 -8.6 long-chain fatty acid outer membrane transporter (RefSeq) compare
b2299 yfcD -2.3 -5.7 predicted NUDIX hydrolase (NCBI) compare
b1088 yceD -2.3 -5.2 hypothetical protein (NCBI) compare
b2810 csdA -2.2 -7.0 cysteine sulfinate desulfinase (NCBI) compare
b0952 ymbA -2.1 -5.3 conserved protein (RefSeq) compare
b2960 yggH -2.1 -7.3 tRNA(m7G46)-methyltransferase (NCBI) compare
b3963 fabR -2.0 -9.5 DNA-binding transcriptional repressor (RefSeq) compare
b4243 yjgF -1.9 -5.9 orf, hypothetical protein (VIMSS) compare
b3920 yiiQ -1.8 -5.1 hypothetical protein (NCBI) compare
b2174 b2174 -1.8 -6.5 orf, hypothetical protein (VIMSS) compare
b0939 ycbR -1.7 -7.4 predicted periplasmic pilin chaperone (NCBI) compare
b2134 pbpG -1.7 -5.1 penicillin-binding protein 7 (VIMSS) compare
b0211 mltD -1.6 -5.3 predicted membrane-bound lytic murein transglycosylase D (NCBI) compare
b0557 borD -1.6 -5.4 DLP12 prophage; predicted lipoprotein (NCBI) compare
b2513 yfgM -1.6 -6.0 hypothetical protein (NCBI) compare
b3807 cyaY -1.5 -5.7 frataxin-like protein (NCBI) compare
b3554 yiaF -1.5 -6.5 orf, hypothetical protein (VIMSS) compare
b3780 rhlB -1.5 -7.9 ATP-dependent RNA helicase (NCBI) compare
b0441 ppiD -1.4 -7.0 peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) compare
b1805 fadD -1.4 -7.1 acyl-CoA synthase (NCBI) compare
b4049 dusA -1.4 -5.5 tRNA-dihydrouridine synthase A (RefSeq) compare
b2037 rfbX -1.4 -5.8 predicted polisoprenol-linked O-antigen transporter (NCBI) compare
b4206 ytfB -1.3 -5.6 orf, hypothetical protein (VIMSS) compare
b3055 htrG -1.3 -5.7 predicted signal transduction protein (SH3 domain) (NCBI) compare
b2593 yfiH -1.3 -6.1 hypothetical protein (NCBI) compare
b4324 uxuR -1.2 -5.3 DNA-binding transcriptional repressor (NCBI) compare
b3509 hdeB -1.2 -5.4 orf, hypothetical protein (VIMSS) compare
b0553 nmpC -1.1 -5.3 DLP12 prophage; truncated outer membrane porin (pseudogene) (RefSeq) compare
b4169 amiB -1.0 -5.6 N-acetylmuramoyl-l-alanine amidase II (NCBI) compare
b3407 yhgF -1.0 -6.5 orf, hypothetical protein (VIMSS) compare
b0879 macB +1.1 6.0 fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component (NCBI) compare
b0961 yccF +1.1 5.3 conserved inner membrane protein (NCBI) compare
b3258 panF +1.1 7.1 sodium/pantothenate symporter (VIMSS) compare
b0960 b0960 +1.1 7.9 orf, hypothetical protein (VIMSS) compare
b2132 bglX +1.1 7.2 beta-D-glucoside glucohydrolase, periplasmic (NCBI) compare
b2836 aas +1.2 7.6 2-acyl-glycerophospho-ethanolamine acyltransferase (NCBI) compare
b1766 sppA +1.2 6.8 protease IV (signal peptide peptidase) (NCBI) compare
b4089 rpiR +1.3 8.8 transcriptional repressor of rpiB expression (VIMSS) compare
b0772 ybhC +1.3 7.1 predicted pectinesterase (NCBI) compare
b2835 ygeD +1.4 8.8 predicted inner membrane protein (NCBI) compare
b1047 mdoC +1.4 8.0 glucans biosynthesis protein (NCBI) compare
b4484 cpxP +1.6 5.5 periplasmic protein combats stress (NCBI) compare
b1833 yebS +1.7 6.6 conserved inner membrane protein (NCBI) compare
b4359 mdoB +1.8 14.2 phosphoglycerol transferase I (VIMSS) compare
b1834 yebT +1.8 9.9 orf, hypothetical protein (VIMSS) compare
b2749 ygbE +2.3 12.4 conserved inner membrane protein (NCBI) compare
b1424 mdoD +2.5 8.9 glucan biosynthesis protein, periplasmic (RefSeq) compare


Specific phenotypes for stress Ramoplanin across organisms