Experiment set10IT021 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Cys

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.4 -9.8 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.1 -8.9 Carbamoyl-phosphate synthase small chain compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_5017 -4.6 -1.4 Sec-independent protein translocase protein TatB compare
PP_3999 -4.4 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5095 -4.1 -2.5 pyrroline-5-carboxylate reductase compare
PP_2371 -4.1 -8.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1208 -3.6 -2.8 conserved protein of unknown function, SlyX family compare
PP_4268 -3.4 -1.5 nucleoid-associated broad specificity regulator compare
PP_5453 -3.4 -1.8 conserved protein of unknown function compare
PP_1215 -3.3 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_2370 -3.1 -4.1 conserved protein of unknown function compare
PP_0735 -3.1 -2.9 molybdopterin-synthase adenylyltransferase compare
PP_1654 -3.0 -2.9 cysteine synthase B compare
PP_4964 -2.8 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_1054 -2.6 -1.7 Type II secretion pathway protein XcpZ compare
PP_4271 -2.5 -1.3 conserved protein of unknown function compare
PP_2718 -2.5 -2.3 arsenic resistance transcriptional regulator compare
PP_4874 -2.4 -1.4 50S ribosomal protein L9 compare
PP_4700 -2.4 -2.3 pantothenate synthetase compare
PP_0339 -2.3 -3.2 Pyruvate dehydrogenase E1 component compare
PP_4917 -2.3 -4.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1912 -2.3 -4.5 Phosphate acyltransferase compare
PP_0833 -2.3 -1.6 queuine tRNA-ribosyltransferase compare
PP_0691 -2.3 -3.4 Glutamate 5-kinase compare
PP_1231 -2.2 -3.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4120 -2.2 -4.4 NADH-quinone oxidoreductase subunit B compare
PP_4424 -2.2 -2.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4129 -2.2 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1214 -2.1 -2.3 putative transcriptional regulatory protein compare
PP_2765 -2.0 -3.4 putative Sulfonate monooxygenase MsuD compare
PP_5114 -2.0 -1.5 putative adenine methyltransferase compare
PP_2900 -2.0 -2.8 conserved protein of unknown function compare
PP_3434 -1.9 -1.6 conserved protein of unknown function compare
PP_4196 -1.9 -2.2 conserved exported protein of unknown function compare
PP_4131 -1.9 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_2510 -1.9 -2.0 conserved protein of unknown function compare
PP_2337 -1.8 -2.9 aconitate isomerase compare
PP_4782 -1.8 -3.9 Phosphomethylpyrimidine kinase compare
PP_1664 -1.8 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1994 -1.8 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_0246 -1.7 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_5331 -1.7 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_1366 -1.7 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_5104 -1.7 -6.1 thiazole synthase compare
PP_5350 -1.7 -3.8 Transcriptional regulator, RpiR family compare
PP_1310 -1.7 -1.6 conserved hypothetical protein compare
PP_2327 -1.7 -3.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2970 -1.6 -2.5 conserved exported protein of unknown function compare
PP_1097 -1.6 -1.7 Methionine--tRNA ligase compare
PP_2668 -1.6 -2.0 ABC efflux transporter, ATP-binding protein compare
PP_0787 -1.6 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0164 -1.6 -5.1 conserved protein of unknown function compare
PP_3938 -1.6 -2.1 conserved protein of unknown function compare
PP_0846 -1.5 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_2568 -1.5 -1.3 Ring-cleaving dioxygenase compare
PP_5309 -1.5 -1.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2928 -1.5 -4.1 Saccharopine dehydrogenase compare
PP_2214 -1.4 -3.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2378 -1.4 -1.8 Fe/S biogenesis protein NfuA compare
PP_1734 -1.4 -2.5 Probable septum site-determining protein MinC compare
PP_2029 -1.4 -1.9 von Willebrand factor type A domain protein compare
PP_5225 -1.4 -1.3 frataxin compare
PP_5329 -1.4 -3.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1055 -1.3 -1.4 Type II secretion pathway protein GspN compare
PP_4069 -1.3 -2.3 conserved protein of unknown function compare
PP_2429 -1.3 -1.6 putative Membrane protein compare
PP_1348 -1.3 -4.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2328 -1.3 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_0719 -1.3 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0025 -1.3 -1.3 hypothetical protein compare
PP_4126 -1.3 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_3799 -1.3 -2.9 conserved exported protein of unknown function compare
PP_2217 -1.2 -2.7 enoyl-CoA hydratase compare
PP_2880 -1.2 -2.3 Transcriptional regulator, TetR family compare
PP_2336 -1.2 -2.9 aconitate hydratase 1 compare
PP_1733 -1.2 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_1426 -1.2 -5.4 L-aspartate oxidase compare
PP_1216 -1.1 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1770 -1.1 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_3637 -1.1 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0628 -1.1 -2.1 conserved protein of unknown function compare
PP_4121 -1.1 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_2441 -1.1 -1.4 conserved protein of unknown function compare
PP_5028 -1.1 -2.2 proline iminopeptidase compare
PP_5701 -1.1 -1.7 conserved protein of unknown function compare
PP_4942 -1.1 -1.9 conserved protein of unknown function compare
PP_0398 -1.1 -2.2 Thiosulfate sulfurtransferase GlpE compare
PP_2716 -1.1 -2.6 arsenate reductase compare
PP_1237 -1.0 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5230 -1.0 -1.6 Tyrosine recombinase XerC compare
PP_0393 -1.0 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3052 -1.0 -1.1 conserved protein of unknown function compare
PP_4130 -1.0 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3810 -1.0 -1.6 conserved protein of unknown function compare
PP_2611 -1.0 -2.2 membrane protein of unknown function compare
PP_2414 -1.0 -0.7 conserved exported protein of unknown function compare
PP_5621 -1.0 -1.6 protein of unknown function compare
PP_1233 -1.0 -2.5 sulfurtransferase compare
PP_3234 -1.0 -2.3 Heat shock protein, HSP20 family compare
PP_0957 -1.0 -1.1 D-arabinose 5-phosphate isomerase compare
PP_0945 -1.0 -2.0 conserved protein of unknown function compare
PP_0366 -1.0 -3.0 dethiobiotin synthetase compare
PP_4701 -1.0 -0.8 glucose-6-phosphate isomerase compare
PP_4546 -1.0 -2.4 ATP-dependent helicase HrpA compare
PP_1736 -1.0 -2.5 conserved protein of unknown function compare
PP_0153 -1.0 -1.3 hypothetical protein compare
PP_0888 -1.0 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_2379 -1.0 -2.3 putative cytochrome oxidase biogenesis protein compare
PP_0855 -1.0 -1.9 conserved protein of unknown function compare
PP_3336 -1.0 -2.0 conserved protein of unknown function compare
PP_3941 -1.0 -2.9 maleamate amidohydrolase compare
PP_4593 -0.9 -1.4 conserved protein of unknown function compare
PP_0048 -0.9 -0.9 conserved protein of unknown function compare
PP_5748 -0.9 -1.3 cytochrome c heme lyase subunit compare
PP_3532 -0.9 -1.3 Transcriptional regulator, AsnC family compare
PP_1678 -0.9 -1.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5327 -0.9 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_0607 -0.9 -0.7 putative Type IV pili biogenesis protein FimT compare
PP_5390 -0.9 -2.3 conserved hypothetical protein compare
PP_0900 -0.9 -1.8 PAP2 family protein compare
PP_4922 -0.9 -4.4 Phosphomethylpyrimidine synthase compare
PP_0127 -0.9 -3.1 Thiol:disulfide interchange protein compare
PP_5706 -0.9 -1.6 Sec translocation complex - SecG subunit compare
PP_0856 -0.9 -1.9 conserved lipoprotein of unknown function compare
PP_4503 -0.9 -1.8 DNA-binding response regulator compare
PP_1074 -0.9 -1.1 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4739 -0.9 -1.9 conserved protein of unknown function compare
PP_2960 -0.9 -2.3 transcriptional regulator, AraC family compare
PP_0332 -0.8 -2.8 putative Acyltransferase compare
PP_4909 -0.8 -3.0 phosphoserine phosphatase compare
PP_2842 -0.8 -3.8 urease accessory protein compare
PP_2947 -0.8 -2.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_5388 -0.8 -2.8 probable exported copper efflux protein compare
PP_0959 -0.8 -0.9 phospholipid ABC transporter compare
PP_3930 -0.8 -1.2 conserved exported protein of unknown function compare
PP_0978 -0.8 -1.6 conserved protein of unknown function compare
PP_2622 -0.8 -1.4 conserved protein of unknown function compare
PP_0152 -0.8 -1.7 conserved exported protein of unknown function compare
PP_5090 -0.8 -0.6 putative cell division protein compare
PP_5619 -0.8 -2.2 protein of unknown function compare
PP_5558 -0.8 -1.7 putative transcriptional xre family of phage origin compare
PP_2929 -0.8 -3.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0685 -0.8 -1.4 conserved protein of unknown function compare
PP_4690 -0.8 -1.3 Rieske 2Fe-2S family protein compare
PP_1783 -0.8 -0.5 dTDP-glucose pyrophosphorylase compare
PP_4199 -0.8 -0.7 putative Lipoprotein compare
PP_0593 -0.8 -0.5 putative ribosome-binding factor compare
PP_0508 -0.8 -1.3 conserved exported protein of unknown function compare
PP_0984 -0.8 -2.0 conserved membrane protein of unknown function compare
PP_1824 -0.8 -1.2 Smr domain protein compare
PP_3243 -0.8 -1.3 Acetyltransferase, GNAT family compare
PP_5221 -0.8 -1.9 conserved protein of unknown function, UPF0178 family compare
PP_5659 -0.8 -1.8 protein of unknown function compare
PP_3522 -0.8 -1.7 conserved protein of unknown function compare
PP_2745 -0.8 -1.7 Universal stress protein family compare
PP_0250 -0.8 -1.3 heat shock protein Hsp15 involved in ribosome recycling compare
PP_3378 -0.8 -0.9 putative 2-ketogluconokinase compare
PP_5241 -0.8 -1.6 DNA-binding response regulator, LuxR family compare
PP_4984 -0.8 -3.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3411 -0.8 -0.9 conserved protein of unknown function compare
PP_3715 -0.7 -2.3 Muconate cycloisomerase 1 compare
PP_2070 -0.7 -1.3 Transcriptional regulator, AraC family compare
PP_5423 -0.7 -1.1 conserved membrane protein of unknown function compare
PP_3519 -0.7 -0.8 putative Lipoprotein compare
PP_5202 -0.7 -1.4 putative cell division protein compare
PP_t10 -0.7 -0.6 tRNA-Pro compare
PP_2878 -0.7 -1.1 conserved protein of unknown function compare
PP_0303 -0.7 -2.3 dehydrocarnitine cleavage enzyme compare
PP_3866 -0.7 -1.1 conserved protein of unknown function compare
PP_0218 -0.7 -3.5 Sensory box protein compare
PP_2210 -0.7 -1.8 LysR family transcriptional regulator compare
PP_4124 -0.7 -1.7 NADH-quinone oxidoreductase subunit G compare
PP_2215 -0.7 -1.5 acetyl-CoA acetyltransferase compare
PP_5201 -0.7 -0.7 conserved protein of unknown function, UPF0149 family compare
PP_5666 -0.7 -1.0 putative microcin B17-like processing protein, McbB family compare
PP_2972 -0.7 -1.2 conserved protein of unknown function compare
PP_1390 -0.7 -1.0 conserved exported protein of unknown function compare
PP_4451 -0.7 -1.6 conserved protein of unknown function compare
PP_3640 -0.7 -1.6 Transcriptional regulator, AraC family compare
PP_4929 -0.7 -2.0 Transcriptional regulator, LysR family compare
PP_3265 -0.7 -1.3 putative phosphohydrolase of unknown function compare
PP_1834 -0.7 -2.3 conserved protein of unknown function compare
PP_2160 -0.7 -1.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4036 -0.7 -2.0 D-hydantoinase/dihydropyrimidinase compare
PP_5157 -0.7 -2.0 conserved exported protein of unknown function compare
PP_4377 -0.7 -1.8 putative Flagellin FlaG compare
PP_3237 -0.7 -2.1 Universal stress protein family compare
PP_3926 -0.7 -1.2 short-chain dehydrogenase compare
PP_3891 -0.7 -1.5 conserved protein of unknown function compare
PP_0215 -0.7 -2.7 Response regulator compare
PP_0362 -0.7 -3.6 Biotin synthase compare
PP_4892 -0.7 -2.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2247 -0.7 -1.5 putative Endoribonuclease compare
PP_0758 -0.7 -1.6 conserved protein of unknown function compare
PP_4364 -0.7 -2.0 putative Anti-sigma F factor antagonist compare
PP_4828 -0.7 -0.7 Precorrin-8X methylmutase compare
PP_2932 -0.7 -2.9 Amidase family protein compare
PP_3380 -0.7 -1.7 2-ketogluconate utilization repressor compare
PP_4509 -0.7 -2.6 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms