Experiment set10IT020 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Asp

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +1.1 10.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +1.0 9.8 Sensor protein GacS compare
PP_0856 +1.0 3.5 conserved lipoprotein of unknown function compare
PP_3307 +1.0 2.3 conserved protein of unknown function compare
PP_1655 +0.9 6.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 +0.8 6.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_2720 +0.8 1.6 conserved protein of unknown function compare
PP_1261 +0.8 3.8 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4785 +0.8 4.4 conserved exported protein of unknown function compare
PP_4642 +0.8 1.6 Cyclic diguanosine monophosphate-binding protein compare
PP_2747 +0.8 1.3 conserved protein of unknown function compare
PP_1898 +0.7 2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4952 +0.7 1.6 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0846 +0.7 1.6 DnaK-like molecular chaperone specific for IscU compare
PP_0593 +0.7 1.0 putative ribosome-binding factor compare
PP_2152 +0.7 1.8 glycerophosphoryl diester phosphodiesterase compare
PP_0001 +0.7 1.2 probable chromosome-partitioning protein compare
PP_2499 +0.7 0.8 conserved protein of unknown function compare
PP_1903 +0.6 3.4 putative phosphotyrosine-protein phosphatase compare
PP_3539 +0.6 1.8 putative Transcriptional regulator compare
PP_1824 +0.6 1.8 Smr domain protein compare
PP_2159 +0.6 3.5 Copper-binding protein, plastocyanin/azurin family compare
PP_3899 +0.6 2.2 conserved protein of unknown function, hicB family compare
PP_0232 +0.6 1.5 ATP-binding taurine transporter subunit compare
PP_3880 +0.6 1.7 conserved exported protein of unknown function compare
PP_1122 +0.6 0.9 OmpA family protein compare
PP_1548 +0.6 2.4 conserved protein of unknown function compare
PP_3365 +0.6 1.4 Acetolactate synthase compare
PP_4560 +0.6 2.7 putative Ribonuclease BN compare
PP_4792 +0.5 2.3 conserved exported protein of unknown function compare
PP_5017 +0.5 1.0 Sec-independent protein translocase protein TatB compare
PP_1713 +0.5 1.7 Transcriptional regulator PcaQ compare
PP_4254 +0.5 1.0 conserved protein of unknown function compare
PP_3064 +0.5 1.7 Phage tail protein compare
PP_1562 +0.5 1.7 putative Phage terminase, small subunit compare
PP_2784 +0.5 1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1415 +0.5 2.3 putative membrane associated enzyme subunit compare
PP_4561 +0.5 0.8 stress response protein compare
PP_3964 +0.5 2.3 transposase compare
PP_3043 +0.5 1.6 conserved protein of unknown function compare
PP_1310 +0.5 1.9 conserved hypothetical protein compare
PP_2090 +0.5 2.1 Uroporphyrinogen-III C-methyltransferase compare
PP_4597 +0.5 2.3 Cyclic pyranopterin monophosphate synthase compare
PP_5575 +0.5 0.9 conserved protein of unknown function compare
PP_1779 +0.5 2.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5582 +0.5 1.0 conserved protein of unknown function compare
PP_1255 +0.5 2.5 putative cis-4-hydroxy-D-proline oxidase compare
PP_2885 +0.5 1.5 putative Transporter compare
PP_5594 +0.5 1.6 conserved protein of unknown function compare
PP_0719 +0.5 0.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3258 +0.4 1.7 conserved protein of unknown function compare
PP_1410 +0.4 1.2 conserved protein of unknown function compare
PP_4373 +0.4 3.7 Transcriptional regulator FleQ compare
PP_2147 +0.4 1.8 conserved exported protein of unknown function compare
PP_1623 +0.4 3.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_5198 +0.4 1.4 conserved protein of unknown function compare
PP_5633 +0.4 2.4 conserved protein of unknown function compare
PP_3481 +0.4 0.9 conserved exported protein of unknown function compare
PP_4271 +0.4 0.8 conserved protein of unknown function compare
PP_4528 +0.4 1.5 conserved protein of unknown function compare
PP_1528 +0.4 0.9 conserved protein of unknown function compare
PP_0957 +0.4 1.2 D-arabinose 5-phosphate isomerase compare
PP_2348 +0.4 2.0 Sensor histidine kinase compare
PP_0254 +0.4 2.0 conserved protein of unknown function compare
PP_4171 +0.4 4.0 conserved exported protein of unknown function compare
PP_0574 +0.4 3.4 DNA-binding response regulator, LuxR family compare
PP_3967 +0.4 2.4 MutT/nudix family protein compare
PP_1198 +0.4 1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4273 +0.4 0.8 Transcriptional regulator, MerR family compare
PP_5519 +0.4 0.9 conserved protein of unknown function of phage origin compare
PP_2491 +0.4 2.8 ThiJ/PfpI family protein compare
PP_4356 +0.4 2.1 Flagellar protein FliO compare
PP_3035 +0.4 1.6 conserved protein of unknown function compare
PP_4847 +0.4 1.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_5675 +0.4 1.2 conserved protein of unknown function compare
PP_0220 +0.4 1.9 methionine import ATP-binding protein metN2 compare
PP_4848 +0.4 0.9 Curved DNA-binding protein compare
PP_0941 +0.4 2.3 putative ribosome associated protein compare
PP_1113 +0.4 3.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0274 +0.4 1.1 putative transcriptional regulator containing HTH domain compare
PP_5557 +0.4 1.6 protein of unknown function compare
PP_4808 +0.4 1.5 23S rRNA m3psi1915 methyltransferase compare
PP_5654 +0.4 0.8 putative phosphotriesterase compare
PP_3902 +0.4 1.1 conserved protein of unknown function compare
PP_1829 +0.4 1.0 Hydrolase, alpha/beta fold family compare
PP_5487 +0.4 2.2 conserved protein of unknown function compare
PP_4652 +0.4 2.0 putative Membrane protein compare
PP_0283 +0.4 1.6 Arginine/ornithine transport ATP-binding protein AotP compare
PP_4136 +0.4 0.8 Transcriptional regulator, LuxR family compare
PP_3866 +0.4 1.0 conserved protein of unknown function compare
PP_1153 +0.4 1.4 putative lipoprotein compare
PP_3522 +0.4 1.8 conserved protein of unknown function compare
PP_2361 +0.4 2.3 putative chaperone protein compare
PP_0781 +0.4 1.7 conserved protein of unknown function compare
PP_5064 +0.4 2.7 choline dehydrogenase compare
PP_4178 +0.4 1.9 Dienelactone hydrolase family protein compare
PP_0621 +0.4 2.0 conserved protein of unknown function compare
PP_0896 +0.4 2.1 Carbon-nitrogen hydrolase family protein compare
PP_5058 +0.4 2.1 Carboxy-terminal-processing protease compare
PP_0168 +0.4 3.5 putative surface adhesion protein compare
PP_2681 +0.4 1.0 coenzyme PQQ synthesis protein D compare
PP_1044 +0.4 1.9 Lipoprotein UxpA compare
PP_4015 +0.4 1.9 HflD-like high frequency lysogenization protein compare
PP_1058 +0.4 3.3 conserved protein of unknown function compare
PP_4253 +0.4 1.2 cytochrome c oxidase subunit, cbb3-type compare
PP_1778 +0.4 1.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0241 +0.4 1.5 Transporter compare
PP_1926 +0.4 1.3 putative phosphotyrosine-protein phosphatase compare
PP_4953 +0.4 1.8 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_5628 +0.4 1.6 conserved protein of unknown function compare
PP_3141 +0.4 1.9 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_4957 +0.4 1.7 conserved protein of unknown function compare
PP_0007 +0.4 1.5 conserved hypothetical protein compare
PP_0536 +0.4 1.8 conserved protein of unknown function compare
PP_5135 +0.4 1.9 ABC transporter, periplasmic binding protein compare
PP_2443 +0.4 2.0 Serine/threonine transporter SstT compare
PP_2661 +0.4 1.2 conserved protein of unknown function compare
PP_2510 +0.4 0.6 conserved protein of unknown function compare
PP_5545 +0.4 1.7 protein of unknown function compare
PP_0592 +0.4 1.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1568 +0.3 0.8 conserved protein of unknown function compare
PP_2596 +0.3 2.0 putative ABC transporter, permease/ATP-binding protein compare
PP_5201 +0.3 1.4 conserved protein of unknown function, UPF0149 family compare
PP_3226 +0.3 2.5 Acyl-CoA dehydrogenase-related protein compare
PP_2032 +0.3 1.5 putative ATPase compare
PP_2725 +0.3 1.0 Protease PfpI compare
PP_4925 +0.3 1.3 conserved protein of unknown function compare
PP_0181 +0.3 1.6 conserved protein of unknown function compare
PP_1827 +0.3 1.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_2229 +0.3 1.8 putative K(+)/H(+) antiporter subunit C compare
PP_1435 +0.3 1.9 DNA repair protein RecO compare
PP_5453 +0.3 0.6 conserved protein of unknown function compare
PP_1890 +0.3 2.0 Type 1 pili chaperone protein FimC compare
PP_1683 +0.3 0.7 Transcriptional regulator, MarR family compare
PP_5702 +0.3 1.7 conserved protein of unknown function compare
PP_2568 +0.3 0.7 Ring-cleaving dioxygenase compare
PP_1190 +0.3 1.1 conserved protein of unknown function compare
PP_2700 +0.3 1.6 AhpC/TSA family protein compare
PP_5107 +0.3 1.1 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_4032 +0.3 2.1 putative Outer membrane lipoprotein Blc compare
PP_4163 +0.3 1.7 conserved exported protein of unknown function compare
PP_2503 +0.3 1.0 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2691 +0.3 2.1 conserved protein of unknown function compare
PP_0197 +0.3 1.1 conserved protein of unknown function compare
PP_2711 +0.3 1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3121 +0.3 1.3 transcriptional regulator, LysR family compare
PP_0022 +0.3 0.6 hypothetical protein compare
PP_1249 +0.3 1.9 conserved protein of unknown function, DUF4223 family compare
PP_0995 +0.3 1.9 conserved membrane protein of unknown function compare
PP_2883 +0.3 0.7 conserved protein of unknown function compare
PP_1489 +0.3 1.6 CheW domain protein compare
PP_4651 +0.3 2.5 Ubiquinol oxidase subunit I, cyanide insensitive compare
PP_0694 +0.3 1.4 conserved protein of unknown function compare
PP_0698 +0.3 2.3 Transcriptional regulator, LysR family compare
PP_0703 +0.3 1.7 putative Transmembrane sensor compare
PP_0827 +0.3 1.0 putative phosphonate transport system permease protein PtxC compare
PP_t29 +0.3 0.8 tRNA-Ala compare
PP_2513 +0.3 1.1 4-oxalomesaconate tautomerase compare
PP_5508 +0.3 0.7 conserved protein of unknown function compare
PP_1706 +0.3 1.5 Nitrite reductase compare
PP_0209 +0.3 1.5 ATP-binding taurine transporter subunit compare
PP_1124 +0.3 0.8 conserved membrane protein of unknown function compare
PP_0239 +0.3 1.5 aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate compare
PP_0607 +0.3 1.2 putative Type IV pili biogenesis protein FimT compare
PP_3411 +0.3 0.6 conserved protein of unknown function compare
PP_2730 +0.3 1.5 putative Lipoprotein compare
PP_0806 +0.3 3.0 putative Surface adhesion protein compare
PP_4994 +0.3 1.4 conserved protein of unknown function compare
PP_3199 +0.3 1.7 putative Monooxygenase compare
PP_5166 +0.3 2.0 Sigma-54 dependent transcriptional regulator compare
PP_3338 +0.3 1.4 putative cytochrome bd-type quinol oxidase compare
PP_3884 +0.3 1.3 Phage holin, lambda family compare
PP_1225 +0.3 1.4 7-carboxy-7-deazaguanine synthase compare
PP_1112 +0.3 2.5 conserved membrane protein of unknown function compare
PP_0640 +0.3 1.1 conserved protein of unknown function compare
PP_3098 +0.3 0.6 conserved protein of unknown function compare
PP_3562 +0.3 1.8 conserved exported protein of unknown function compare
PP_2446 +0.3 1.4 conserved exported protein of unknown function compare
PP_4836 +0.3 1.4 conserved exported protein of unknown function compare
PP_3814 +0.3 1.3 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_4301 +0.3 1.3 Pyruvate kinase compare
PP_1979 +0.3 1.0 putative Hydrolase compare
PP_0805 +0.3 2.0 Outer membrane efflux protein compare
PP_3799 +0.3 1.5 conserved exported protein of unknown function compare
PP_4949 +0.3 1.5 putative peptidase, TldD/PmbA family compare
PP_1812 +0.3 0.8 conserved protein of unknown function compare
PP_1776 +0.3 2.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_3153 +0.3 1.8 conserved exported protein of unknown function compare
PP_1654 +0.3 1.1 cysteine synthase B compare
PP_0685 +0.3 0.7 conserved protein of unknown function compare
PP_4109 +0.3 0.8 conserved protein of unknown function compare
PP_2958 +0.3 1.0 Glutaredoxin compare
PP_1709 +0.3 1.5 Fumarylacetoacetate hydrolase family protein compare
PP_1004 +0.3 0.9 conserved protein of unknown function compare
PP_2610 +0.3 1.9 conserved protein of unknown function compare
PP_2558 +0.3 2.0 putative Outer membrane efflux protein compare
PP_2746 +0.3 1.9 dimethyl-sulfide monooxygenase compare
PP_0425 +0.3 1.0 conserved protein of unknown function compare
PP_5673 +0.3 1.8 putative D-alanine--D-alanine ligase compare
PP_2061 +0.3 1.7 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms