Experiment set10IT019 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Asn

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.5 -11.7 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.8 -7.9 Carbamoyl-phosphate synthase small chain compare
PP_0787 -5.7 -6.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4999 -5.0 -3.5 dihydroorotase-like protein compare
PP_4700 -3.0 -2.1 pantothenate synthetase compare
PP_1231 -2.9 -7.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5095 -2.9 -3.4 pyrroline-5-carboxylate reductase compare
PP_0164 -2.7 -9.3 conserved protein of unknown function compare
PP_0691 -2.4 -4.8 Glutamate 5-kinase compare
PP_1912 -2.2 -6.4 Phosphate acyltransferase compare
PP_5000 -2.1 -3.0 peptidase component of the ATP-dependent HslVU protease compare
PP_1664 -2.1 -5.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_2336 -2.1 -4.6 aconitate hydratase 1 compare
PP_4917 -2.0 -5.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4874 -2.0 -1.7 50S ribosomal protein L9 compare
PP_0393 -1.9 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1426 -1.8 -12.0 L-aspartate oxidase compare
PP_0735 -1.7 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_1216 -1.7 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2337 -1.7 -3.1 aconitate isomerase compare
PP_4126 -1.7 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_1233 -1.5 -4.6 sulfurtransferase compare
PP_0339 -1.4 -3.6 Pyruvate dehydrogenase E1 component compare
PP_0153 -1.4 -2.0 hypothetical protein compare
PP_4909 -1.4 -5.6 phosphoserine phosphatase compare
PP_2928 -1.3 -7.6 Saccharopine dehydrogenase compare
PP_4895 -1.2 -3.0 tRNA dimethylallyltransferase compare
PP_5104 -1.2 -6.5 thiazole synthase compare
PP_1215 -1.2 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_0801 -1.2 -2.0 conserved exported protein of unknown function compare
PP_0292 -1.2 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4121 -1.2 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_2929 -1.2 -6.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4964 -1.2 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_1468 -1.1 -2.8 Tyrosine recombinase XerD compare
PP_4922 -1.1 -7.4 Phosphomethylpyrimidine synthase compare
PP_1994 -1.1 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_1022 -1.1 -4.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4782 -1.1 -3.3 Phosphomethylpyrimidine kinase compare
PP_4223 -1.0 -2.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1493 -1.0 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4124 -1.0 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_4120 -1.0 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_4696 -1.0 -3.2 Nitrogen regulation protein NR(I) compare
PP_1348 -1.0 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0362 -1.0 -6.4 Biotin synthase compare
PP_3034 -1.0 -3.0 putative Regulator protein compare
PP_5508 -1.0 -1.5 conserved protein of unknown function compare
PP_5346 -0.9 -5.7 pyruvate carboxylase subunit B compare
PP_2070 -0.9 -2.4 Transcriptional regulator, AraC family compare
PP_4620 -0.9 -5.7 Fumarylacetoacetase compare
PP_3926 -0.9 -1.6 short-chain dehydrogenase compare
PP_2716 -0.9 -2.4 arsenate reductase compare
PP_4828 -0.9 -1.3 Precorrin-8X methylmutase compare
PP_4897 -0.9 -3.3 N-acetylmuramoyl-L-alanine amidase compare
PP_0888 -0.9 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_5155 -0.9 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5331 -0.9 -3.1 Long-chain acyl-CoA thioester hydrolase compare
PP_5028 -0.9 -2.2 proline iminopeptidase compare
PP_3245 -0.9 -1.2 conserved protein of unknown function compare
PP_0293 -0.9 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1362 -0.9 -3.1 pyruvate kinase II compare
PP_0566 -0.9 -1.3 translation-related factor compare
PP_5604 -0.9 -1.5 putative subtilisin-like serine protease compare
PP_4546 -0.9 -2.8 ATP-dependent helicase HrpA compare
PP_1079 -0.9 -4.1 Ornithine carbamoyltransferase compare
PP_1237 -0.9 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3417 -0.8 -4.3 D-gluconate transporter compare
PP_5348 -0.8 -5.1 Transcriptional regulator, LysR family compare
PP_3447 -0.8 -1.4 conserved membrane protein of unknown function compare
PP_4131 -0.8 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_3821 -0.8 -4.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4940 -0.8 -4.7 Putative glycosyltransferase compare
PP_0366 -0.8 -5.0 dethiobiotin synthetase compare
PP_2214 -0.8 -2.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2932 -0.8 -4.7 Amidase family protein compare
PP_3378 -0.8 -2.0 putative 2-ketogluconokinase compare
PP_2302 -0.8 -3.3 DNA-binding, ATP-dependent protease compare
PP_4129 -0.8 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0117 -0.8 -3.5 Zn(2+) ABC transporter - permease subunit compare
PP_1353 -0.7 -1.7 conserved membrane protein of unknown function compare
PP_4364 -0.7 -2.6 putative Anti-sigma F factor antagonist compare
PP_0363 -0.7 -4.8 8-amino-7-oxononanoate synthase compare
PP_2793 -0.7 -2.1 Acyl-CoA dehydrogenase family protein compare
PP_3409 -0.7 -2.3 putative Cobalamin biosynthesis protein cobE compare
PP_0833 -0.7 -1.2 queuine tRNA-ribosyltransferase compare
PP_5217 -0.7 -5.6 Polyphosphate kinase compare
PP_0218 -0.7 -4.7 Sensory box protein compare
PP_2379 -0.7 -3.5 putative cytochrome oxidase biogenesis protein compare
PP_3730 -0.7 -1.7 Transcriptional regulatory protein AruR compare
PP_4143 -0.7 -3.2 conserved protein of unknown function compare
PP_2414 -0.7 -1.1 conserved exported protein of unknown function compare
PP_1553 -0.7 -1.4 conserved protein of unknown function compare
PP_2497 -0.7 -2.1 conserved protein of unknown function compare
PP_0289 -0.6 -3.8 Imidazoleglycerol-phosphate dehydratase compare
PP_4720 -0.6 -1.7 putative RNA binding protein compare
PP_5347 -0.6 -4.6 pyruvate carboxylase subunit A compare
PP_4993 -0.6 -2.4 Glutathione synthetase compare
PP_4262 -0.6 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5327 -0.6 -4.1 putative phosphate ABC transporter, permease subunit compare
PP_2334 -0.6 -2.8 2-methylisocitrate lyase compare
PP_0914 -0.6 -5.0 GGDEF domain protein compare
PP_0585 -0.6 -1.7 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0984 -0.6 -2.5 conserved membrane protein of unknown function compare
PP_5597 -0.6 -2.7 conserved protein of unknown function compare
PP_1428 -0.6 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_5310 -0.6 -2.6 junction-specific ATP-dependent DNA helicase compare
PP_1466 -0.6 -2.8 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_4799 -0.6 -1.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4701 -0.6 -0.8 glucose-6-phosphate isomerase compare
PP_t10 -0.6 -1.6 tRNA-Pro compare
PP_5230 -0.6 -1.6 Tyrosine recombinase XerC compare
PP_5352 -0.6 -4.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0001 -0.6 -1.1 probable chromosome-partitioning protein compare
PP_5328 -0.6 -2.0 putative phosphate transport system permease protein compare
PP_0967 -0.6 -4.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3320 -0.6 -1.9 conserved protein of unknown function compare
PP_4984 -0.6 -4.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5014 -0.6 -1.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5223 -0.6 -2.9 regulator of nucleotide diphosphokinase compare
PP_2160 -0.6 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5100 -0.6 -1.6 dITP/XTP pyrophosphatase compare
PP_3407 -0.6 -2.3 conserved protein of unknown function compare
PP_1629 -0.6 -2.5 Protein RecA compare
PP_0758 -0.6 -2.2 conserved protein of unknown function compare
PP_5337 -0.6 -2.6 LysR family transcriptional regulator compare
PP_5329 -0.6 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0610 -0.6 -2.4 conserved exported protein of unknown function compare
PP_4619 -0.6 -3.8 Maleylacetoacetate isomerase compare
PP_4355 -0.6 -1.9 flagellar export apparatus subunit compare
PP_4362 -0.6 -1.8 conserved protein of unknown function compare
PP_4253 -0.6 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_1410 -0.6 -1.2 conserved protein of unknown function compare
PP_3806 -0.6 -1.5 Hydrolase, isochorismatase family compare
PP_4699 -0.6 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2016 -0.6 -2.2 conserved protein of unknown function compare
PP_1716 -0.6 -1.4 Transcriptional regulator, Cro/CI family compare
PP_2215 -0.6 -1.7 acetyl-CoA acetyltransferase compare
PP_1783 -0.6 -0.6 dTDP-glucose pyrophosphorylase compare
PP_4695 -0.6 -3.8 Sensory box histidine kinase compare
PP_2903 -0.6 -1.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2429 -0.6 -1.0 putative Membrane protein compare
PP_2880 -0.5 -1.5 Transcriptional regulator, TetR family compare
PP_0771 -0.5 -2.2 mRNA interferase compare
PP_4722 -0.5 -2.2 Transcription elongation factor GreA compare
PP_1082 -0.5 -2.3 bacterioferritin compare
PP_2341 -0.5 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1318 -0.5 -3.3 Cytochrome b compare
PP_5704 -0.5 -2.3 conserved protein of unknown function compare
PP_0821 -0.5 -2.6 conserved exported protein of unknown function compare
PP_4988 -0.5 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3089 -0.5 -2.2 conserved protein of unknown function compare
PP_1511 -0.5 -2.1 conserved protein of unknown function compare
PP_2181 -0.5 -1.6 Transcriptional regulator, Cro/CI family compare
PP_4122 -0.5 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4504 -0.5 -1.1 conserved exported protein of unknown function compare
PP_0966 -0.5 -3.2 Histidinol dehydrogenase compare
PP_5499 -0.5 -1.7 conserved protein of unknown function compare
PP_2217 -0.5 -2.4 enoyl-CoA hydratase compare
PP_4829 -0.5 -2.0 putative precorrin-3B synthase compare
PP_0345 -0.5 -2.7 putative Heptose kinase WapP compare
PP_2402 -0.5 -1.1 putative Sensor histidine kinase compare
PP_1455 -0.5 -1.9 conserved protein of unknown function compare
PP_4004 -0.5 -1.5 DNA translocase FtsK compare
PP_1479 -0.5 -1.7 HicB protein compare
PP_3649 -0.5 -1.8 Transcriptional regulator, GntR family compare
PP_0435 -0.5 -4.1 Peptidase, M23/M37 family compare
PP_0240 -0.5 -2.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_5448 -0.5 -1.9 conserved protein of unknown function compare
PP_2978 -0.5 -2.6 conserved protein of unknown function compare
PP_3481 -0.5 -1.5 conserved exported protein of unknown function compare
PP_0274 -0.5 -1.1 putative transcriptional regulator containing HTH domain compare
PP_0040 -0.5 -1.3 hypothetical protein compare
PP_1736 -0.5 -1.7 conserved protein of unknown function compare
PP_0048 -0.5 -0.8 conserved protein of unknown function compare
PP_1522 -0.5 -2.4 major cold shock protein compare
PP_5278 -0.5 -2.0 4-guanidinobutyraldehyde dehydrogenase compare
PP_4726 -0.5 -1.3 Chaperone protein DnaJ compare
PP_1536 -0.5 -2.3 conserved protein of unknown function compare
PP_0916 -0.5 -2.0 Amino acid transporter LysE compare
PP_2500 -0.5 -1.9 conserved protein of unknown function compare
PP_1328 -0.5 -1.4 Protein MraZ compare
PP_1326 -0.5 -1.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1871 -0.5 -2.8 Protease HtpX compare
PP_1988 -0.5 -3.2 3-isopropylmalate dehydrogenase compare
PP_3243 -0.5 -1.6 Acetyltransferase, GNAT family compare
PP_3239 -0.5 -1.0 putative cointegrate resolution protein T Tn4652 compare
PP_0365 -0.5 -3.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1451 -0.5 -2.6 conserved exported protein of unknown function compare
PP_4329 -0.5 -1.2 FlhB domain protein compare
PP_0607 -0.5 -1.8 putative Type IV pili biogenesis protein FimT compare
PP_1906 -0.5 -1.7 ribosomal large subunit pseudouridine synthase C compare
PP_4824 -0.5 -2.2 Sensor histidine kinase/response regulator compare
PP_3999 -0.5 -2.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3508 -0.5 -1.2 Protein CobW compare
PP_0719 -0.5 -0.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1632 -0.5 -0.6 conserved protein of unknown function compare
PP_2442 -0.5 -1.3 conserved protein of unknown function, DUF480 family compare
PP_1099 -0.5 -1.0 Cold shock protein CapB compare
PP_1142 -0.5 -0.8 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms