Experiment set10IT017 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Ala

200 most important genes:

  gene name fitness t score description  
PP_4724 -5.5 -8.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -5.5 -15.4 Carbamoyl-phosphate synthase large chain compare
PP_4999 -5.0 -3.4 dihydroorotase-like protein compare
PP_0787 -4.3 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5095 -3.5 -2.8 pyrroline-5-carboxylate reductase compare
PP_1231 -3.2 -9.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2337 -3.1 -3.6 aconitate isomerase compare
PP_4700 -3.0 -2.0 pantothenate synthetase compare
PP_0735 -2.8 -4.1 molybdopterin-synthase adenylyltransferase compare
PP_4874 -2.6 -1.8 50S ribosomal protein L9 compare
PP_1664 -2.5 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0691 -2.5 -4.6 Glutamate 5-kinase compare
PP_2336 -2.4 -4.8 aconitate hydratase 1 compare
PP_4964 -2.0 -4.1 D-erythrose 4-phosphate dehydrogenase compare
PP_0339 -2.0 -3.7 Pyruvate dehydrogenase E1 component compare
PP_5104 -2.0 -9.4 thiazole synthase compare
PP_0001 -1.8 -2.4 probable chromosome-partitioning protein compare
PP_4126 -1.8 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_0393 -1.8 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1426 -1.7 -10.8 L-aspartate oxidase compare
PP_0888 -1.7 -3.0 Photosynthetic apparatus regulatory protein RegA compare
PP_5706 -1.6 -3.3 Sec translocation complex - SecG subunit compare
PP_4782 -1.6 -5.1 Phosphomethylpyrimidine kinase compare
PP_1233 -1.5 -4.4 sulfurtransferase compare
PP_4902 -1.5 -3.0 Oligoribonuclease compare
PP_1734 -1.5 -2.3 Probable septum site-determining protein MinC compare
PP_4909 -1.4 -6.5 phosphoserine phosphatase compare
PP_4799 -1.4 -3.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2217 -1.3 -4.9 enoyl-CoA hydratase compare
PP_4922 -1.3 -8.2 Phosphomethylpyrimidine synthase compare
PP_5331 -1.3 -4.3 Long-chain acyl-CoA thioester hydrolase compare
PP_0164 -1.3 -7.7 conserved protein of unknown function compare
PP_4696 -1.3 -3.9 Nitrogen regulation protein NR(I) compare
PP_5313 -1.2 -3.1 DNA-binding protein HU-alpha compare
PP_1986 -1.2 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_3946 -1.2 -1.8 HTH-type transcriptional repressor NicR compare
PP_1912 -1.2 -3.3 Phosphate acyltransferase compare
PP_0833 -1.2 -1.7 queuine tRNA-ribosyltransferase compare
PP_1176 -1.2 -2.6 conserved protein of unknown function compare
PP_4129 -1.2 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_t10 -1.2 -1.8 tRNA-Pro compare
PP_4120 -1.2 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_3411 -1.2 -2.4 conserved protein of unknown function compare
PP_4196 -1.2 -2.5 conserved exported protein of unknown function compare
PP_1348 -1.2 -4.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0362 -1.1 -7.8 Biotin synthase compare
PP_2929 -1.1 -6.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4131 -1.1 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_0653 -1.1 -2.0 conserved protein of unknown function compare
PP_5329 -1.1 -4.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4895 -1.1 -2.7 tRNA dimethylallyltransferase compare
PP_1994 -1.1 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_1763 -1.0 -3.0 putative oxidoreductase compare
PP_1022 -1.0 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_2334 -1.0 -4.1 2-methylisocitrate lyase compare
PP_2820 -1.0 -1.5 HTH-type transcriptional regulator nfxB compare
PP_3244 -1.0 -2.5 Magnesium transporter, MgtC family compare
PP_1186 -1.0 -1.6 two component system DNA-binding transcriptional dual regulator compare
PP_1702 -1.0 -2.9 Recombination-associated protein RdgC compare
PP_4121 -1.0 -3.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5346 -1.0 -5.6 pyruvate carboxylase subunit B compare
PP_1679 -1.0 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4620 -1.0 -6.7 Fumarylacetoacetase compare
PP_t29 -1.0 -1.4 tRNA-Ala compare
PP_4561 -0.9 -1.0 stress response protein compare
PP_2928 -0.9 -4.5 Saccharopine dehydrogenase compare
PP_0801 -0.9 -1.6 conserved exported protein of unknown function compare
PP_0150 -0.9 -2.3 conserved exported protein of unknown function compare
PP_4018 -0.9 -2.7 Acetyltransferase, GNAT family compare
PP_5350 -0.9 -2.5 Transcriptional regulator, RpiR family compare
PP_1999 -0.9 -2.0 membrane protein required for colicin V production compare
PP_1237 -0.9 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3505 -0.9 -2.4 conserved protein of unknown function compare
PP_1985 -0.9 -3.5 3-isopropylmalate dehydratase large subunit compare
PP_5705 -0.9 -2.1 protein of unknown function compare
PP_4824 -0.9 -3.6 Sensor histidine kinase/response regulator compare
PP_1079 -0.9 -4.1 Ornithine carbamoyltransferase compare
PP_4355 -0.8 -1.4 flagellar export apparatus subunit compare
PP_1629 -0.8 -3.3 Protein RecA compare
PP_0366 -0.8 -4.1 dethiobiotin synthetase compare
PP_5309 -0.8 -1.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4124 -0.8 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_2253 -0.8 -2.0 Transcriptional regulator, GntR family compare
PP_0240 -0.8 -3.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4699 -0.8 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1906 -0.8 -3.1 ribosomal large subunit pseudouridine synthase C compare
PP_0364 -0.8 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_1468 -0.8 -2.2 Tyrosine recombinase XerD compare
PP_4828 -0.8 -1.2 Precorrin-8X methylmutase compare
PP_0685 -0.8 -2.2 conserved protein of unknown function compare
PP_4130 -0.8 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3034 -0.8 -2.2 putative Regulator protein compare
PP_0513 -0.8 -1.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5448 -0.8 -2.1 conserved protein of unknown function compare
PP_5216 -0.8 -2.1 exopolyphosphatase compare
PP_1362 -0.8 -2.4 pyruvate kinase II compare
PP_0022 -0.8 -1.0 hypothetical protein compare
PP_5347 -0.8 -5.4 pyruvate carboxylase subunit A compare
PP_2214 -0.8 -2.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5093 -0.8 -1.5 twitching motility protein compare
PP_2070 -0.7 -2.0 Transcriptional regulator, AraC family compare
PP_5328 -0.7 -3.2 putative phosphate transport system permease protein compare
PP_0979 -0.7 -1.9 DNA polymerase III subunit chi compare
PP_4268 -0.7 -1.1 nucleoid-associated broad specificity regulator compare
PP_0856 -0.7 -1.7 conserved lipoprotein of unknown function compare
PP_0630 -0.7 -1.2 DNA gyrase inhibitor YacG compare
PP_5327 -0.7 -4.2 putative phosphate ABC transporter, permease subunit compare
PP_1012 -0.7 -3.3 DNA-binding response regulator compare
PP_0218 -0.7 -4.9 Sensory box protein compare
PP_0738 -0.7 -2.1 conserved protein of unknown function compare
PP_0025 -0.7 -1.3 hypothetical protein compare
PP_5658 -0.7 -1.9 protein of unknown function compare
PP_2379 -0.7 -3.8 putative cytochrome oxidase biogenesis protein compare
PP_0758 -0.7 -3.0 conserved protein of unknown function compare
PP_4262 -0.7 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3649 -0.7 -1.9 Transcriptional regulator, GntR family compare
PP_4726 -0.7 -1.8 Chaperone protein DnaJ compare
PP_0365 -0.7 -4.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0832 -0.7 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4133 -0.7 -1.4 Transcriptional regulator-related protein compare
PP_2633 -0.7 -1.2 conserved protein of unknown function compare
PP_3902 -0.7 -1.7 conserved protein of unknown function compare
PP_3519 -0.7 -1.1 putative Lipoprotein compare
PP_5348 -0.7 -4.1 Transcriptional regulator, LysR family compare
PP_0719 -0.7 -0.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3819 -0.6 -4.3 glutathione reductase (NADPH) compare
PP_4917 -0.6 -2.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5217 -0.6 -5.1 Polyphosphate kinase compare
PP_4122 -0.6 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1826 -0.6 -1.5 Hydrolase, isochorismatase family compare
PP_2847 -0.6 -1.0 Urease accessory protein UreJ compare
PP_1269 -0.6 -0.9 Universal stress protein family compare
PP_2031 -0.6 -1.2 conserved protein of unknown function compare
PP_5028 -0.6 -2.0 proline iminopeptidase compare
PP_2302 -0.6 -2.9 DNA-binding, ATP-dependent protease compare
PP_0792 -0.6 -3.4 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_5155 -0.6 -2.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5337 -0.6 -2.5 LysR family transcriptional regulator compare
PP_4379 -0.6 -3.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0834 -0.6 -1.6 Sec translocation complex subunit YajC compare
PP_0363 -0.6 -4.5 8-amino-7-oxononanoate synthase compare
PP_3532 -0.6 -1.4 Transcriptional regulator, AsnC family compare
PP_t12 -0.6 -0.9 tRNA-Thr compare
PP_5185 -0.6 -2.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5045 -0.6 -2.3 tRNA sulfurtransferase compare
PP_2402 -0.6 -1.2 putative Sensor histidine kinase compare
PP_0872 -0.6 -2.5 Peptide chain release factor 3 compare
PP_2765 -0.6 -2.0 putative Sulfonate monooxygenase MsuD compare
PP_0407 -0.6 -2.7 DnaJ-like protein DjlA compare
PP_3043 -0.6 -1.8 conserved protein of unknown function compare
PP_1216 -0.6 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4910 -0.6 -1.1 conserved protein of unknown function compare
PP_3640 -0.6 -2.2 Transcriptional regulator, AraC family compare
PP_2087 -0.6 -1.3 CmpX protein compare
PP_4156 -0.6 -1.6 Transcriptional regulator, LysR family compare
PP_4265 -0.6 -1.8 DNA-binding transcriptional dual regulator compare
PP_0120 -0.6 -2.8 putative zinc ABC transporter compare
PP_0254 -0.6 -1.5 conserved protein of unknown function compare
PP_4984 -0.6 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4619 -0.5 -3.4 Maleylacetoacetate isomerase compare
PP_1097 -0.5 -0.6 Methionine--tRNA ligase compare
PP_1036 -0.5 -2.8 membrane-bound lytic murein transglycosylase F compare
PP_0973 -0.5 -2.5 Nucleoid-associated protein PP_0973 compare
PP_1609 -0.5 -1.5 conserved protein of unknown function compare
PP_3875 -0.5 -2.0 conserved protein of unknown function compare
PP_2390 -0.5 -3.0 Transcriptional regulator, LysR family compare
PP_1328 -0.5 -2.0 Protein MraZ compare
PP_5338 -0.5 -1.2 aspartate ammonia-lyase compare
PP_2079 -0.5 -2.8 conserved protein of unknown function compare
PP_4913 -0.5 -2.4 conserved protein of unknown function compare
PP_1938 -0.5 -1.8 conserved protein of unknown function compare
PP_0195 -0.5 -1.5 conserved protein of unknown function compare
PP_1015 -0.5 -3.2 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_0048 -0.5 -0.8 conserved protein of unknown function compare
PP_5052 -0.5 -2.1 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_1017 -0.5 -2.7 mannose/glucose ABC transporter, permease protein conserved
PP_3898 -0.5 -1.7 conserved protein of unknown function compare
PP_1122 -0.5 -1.3 OmpA family protein compare
PP_1729 -0.5 -1.1 conserved protein of unknown function compare
PP_4897 -0.5 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PP_5090 -0.5 -1.1 putative cell division protein compare
PP_0290 -0.5 -2.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1011 -0.5 -2.7 glucokinase compare
PP_2773 -0.5 -0.9 conserved protein of unknown function compare
PP_4937 -0.5 -1.6 toluene tolerance protein compare
PP_1673 -0.5 -2.7 cobyrinate a,c-diamide synthase compare
PP_2215 -0.5 -2.3 acetyl-CoA acetyltransferase compare
PP_0040 -0.5 -1.9 hypothetical protein compare
PP_0293 -0.5 -0.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3336 -0.5 -1.5 conserved protein of unknown function compare
PP_2970 -0.5 -1.8 conserved exported protein of unknown function compare
PP_5548 -0.5 -1.3 protein of unknown function compare
PP_4480 -0.5 -3.1 arginine N-succinyltransferase, subunit alpha compare
PP_0967 -0.5 -3.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0398 -0.5 -2.3 Thiosulfate sulfurtransferase GlpE compare
PP_1038 -0.5 -1.4 conserved protein of unknown function compare
PP_4804 -0.5 -1.5 RlpA-like lipoprotein compare
PP_3018 -0.5 -1.4 conserved protein of unknown function compare
PP_0848 -0.5 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3730 -0.5 -1.4 Transcriptional regulatory protein AruR compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms