Experiment set10IT017 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source with 20AA_mix_minus_Ala

200 most detrimental genes:

  gene name fitness t score description  
PP_5453 +1.2 2.5 conserved protein of unknown function compare
PP_5008 +1.1 1.5 Poly granule-associated protein compare
PP_2695 +1.0 4.9 Transcriptional regulator, LysR family compare
PP_1554 +0.9 2.9 conserved protein of unknown function compare
PP_4847 +0.9 1.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_4099 +0.9 8.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4785 +0.8 4.5 conserved exported protein of unknown function compare
PP_0593 +0.8 1.2 putative ribosome-binding factor compare
PP_1650 +0.8 7.7 Sensor protein GacS compare
PP_2203 +0.8 2.4 conserved protein of unknown function compare
PP_1655 +0.8 6.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3307 +0.8 1.8 conserved protein of unknown function compare
PP_3098 +0.7 1.5 conserved protein of unknown function compare
PP_3541 +0.7 1.9 Transporter, MgtC family compare
PP_4504 +0.7 1.1 conserved exported protein of unknown function compare
PP_0643 +0.7 1.4 protein of unknown function compare
PP_1656 +0.7 4.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_2159 +0.6 3.2 Copper-binding protein, plastocyanin/azurin family compare
PP_3312 +0.6 1.5 putative Heat shock protein compare
PP_4808 +0.6 2.2 23S rRNA m3psi1915 methyltransferase compare
PP_2313 +0.6 2.2 conserved membrane protein of unknown function compare
PP_5471 +0.6 1.0 putative response regulator receiver protein compare
PP_3580 +0.6 1.7 conserved protein of unknown function compare
PP_1562 +0.6 1.6 putative Phage terminase, small subunit compare
PP_0035 +0.6 2.1 putative bactoprenol-linked glycose transferase compare
PP_2668 +0.6 2.2 ABC efflux transporter, ATP-binding protein compare
PP_4464 +0.6 2.9 Transcriptional regulator, LysR family compare
PP_1560 +0.6 2.9 conserved protein of unknown function compare
PP_3824 +0.6 2.3 conserved exported protein of unknown function compare
PP_0236 +0.6 1.2 NAD(P)H-dependent FMN reductase subunit compare
PP_2510 +0.6 1.4 conserved protein of unknown function compare
PP_5039 +0.6 2.3 conserved protein of unknown function compare
PP_2747 +0.5 0.9 conserved protein of unknown function compare
PP_5007 +0.5 1.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3211 +0.5 2.8 ABC transporter, ATP-binding protein compare
PP_0181 +0.5 2.4 conserved protein of unknown function compare
PP_4356 +0.5 2.9 Flagellar protein FliO compare
PP_0536 +0.5 2.4 conserved protein of unknown function compare
PP_5225 +0.5 1.3 frataxin compare
PP_1623 +0.5 3.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_1692 +0.5 1.9 conserved protein of unknown function compare
PP_0640 +0.5 1.0 conserved protein of unknown function compare
PP_3770 +0.5 2.5 conserved protein of unknown function compare
PP_1583 +0.5 2.5 putative Structural protein P5 compare
PP_5598 +0.5 2.2 conserved protein of unknown function compare
PP_0352 +0.5 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0425 +0.5 2.1 conserved protein of unknown function compare
PP_0151 +0.5 2.6 conserved exported protein of unknown function compare
PP_2784 +0.5 1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1513 +0.5 1.6 Ribosomal RNA small subunit methyltransferase J compare
PP_2922 +0.5 2.2 Urea amidolyase-related protein compare
PP_5485 +0.5 2.2 putative N-acetyltransferase, GNAT domain compare
PP_2442 +0.5 0.7 conserved protein of unknown function, DUF480 family compare
PP_1008 +0.5 1.9 RNA polymerase subunit sigma-24 compare
PP_5571 +0.5 1.0 conserved protein of unknown function compare
PP_1568 +0.5 1.0 conserved protein of unknown function compare
PP_3766 +0.5 1.8 Lactoylglutathione lyase compare
PP_2740 +0.5 0.6 Transcriptional regulator, MerR family compare
PP_4296 +0.5 1.4 conserved exported protein of unknown function compare
PP_0278 +0.5 2.0 conserved protein of unknown function compare
PP_2387 +0.5 1.4 conserved protein of unknown function compare
PP_3522 +0.5 1.5 conserved protein of unknown function compare
PP_0540 +0.5 2.9 conserved inner membrane protein compare
PP_2197 +0.5 2.5 conserved exported protein of unknown function compare
PP_3903 +0.5 0.8 conserved protein of unknown function compare
PP_2186 +0.5 1.9 putative Formate dehydrogenase, delta subunit compare
PP_5255 +0.4 2.0 putative hydrolase compare
PP_2229 +0.4 1.4 putative K(+)/H(+) antiporter subunit C compare
PP_1217 +0.4 1.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1258 +0.4 2.0 4-hydroxyproline epimerase compare
PP_1864 +0.4 2.1 conserved protein of unknown function compare
PP_4532 +0.4 1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0145 +0.4 2.1 Na+/Pi-cotransporter compare
PP_1536 +0.4 1.2 conserved protein of unknown function compare
PP_1058 +0.4 3.8 conserved protein of unknown function compare
PP_3035 +0.4 1.6 conserved protein of unknown function compare
PP_2137 +0.4 1.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_2646 +0.4 1.7 conserved protein of unknown function compare
PP_5456 +0.4 1.0 conserved protein of unknown function compare
PP_4916 +0.4 1.7 putative esterase compare
PP_4444 +0.4 2.0 transposase compare
PP_1224 +0.4 2.2 periplasmic subunit of the TolQRA transport system compare
PP_3404 +0.4 2.1 conserved protein of unknown function compare
PP_1548 +0.4 1.0 conserved protein of unknown function compare
PP_5191 +0.4 2.0 conserved exported protein of unknown function compare
PP_0621 +0.4 2.1 conserved protein of unknown function compare
PP_1268 +0.4 1.1 putative HtrA suppressor protein sohA compare
PP_3610 +0.4 2.0 conserved protein of unknown function compare
PP_4515 +0.4 1.9 Transcriptional regulator, MarR family compare
PP_5469 +0.4 1.4 putative SAM-dependent methyltransferase compare
PP_5144 +0.4 1.7 conserved protein of unknown function compare
PP_0725 +0.4 1.8 conserved hypothetical TPR repeat protein compare
PP_4373 +0.4 3.2 Transcriptional regulator FleQ compare
PP_2323 +0.4 3.2 conserved protein of unknown function compare
PP_3199 +0.4 2.1 putative Monooxygenase compare
PP_3679 +0.4 2.5 conserved protein of unknown function compare
PP_5500 +0.4 1.5 protein of unknown function compare
PP_5633 +0.4 1.5 conserved protein of unknown function compare
PP_5557 +0.4 1.4 protein of unknown function compare
PP_1779 +0.4 2.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3738 +0.4 1.9 putative Transcriptional regulator VanR compare
PP_3074 +0.4 2.2 D-beta-hydroxybutyrate permease compare
PP_2551 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_3265 +0.4 2.0 putative phosphohydrolase of unknown function compare
PP_5481 +0.4 1.9 conserved protein of unknown function compare
PP_4642 +0.4 0.7 Cyclic diguanosine monophosphate-binding protein compare
PP_2828 +0.4 1.9 conserved protein of unknown function compare
PP_1048 +0.4 1.2 putative protein secretion protein for export compare
PP_1824 +0.4 0.8 Smr domain protein compare
PP_2595 +0.4 1.3 putative ABC transporter, permease/ATP-binding protein compare
PP_1109 +0.4 3.3 Transcriptional regulator, GntR family compare
PP_5495 +0.4 1.5 protein of unknown function compare
PP_5447 +0.4 1.8 conserved membrane protein of unknown function compare
PP_1198 +0.4 1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4349 +0.4 1.8 conserved protein of unknown function compare
PP_3000 +0.4 1.8 MaoC domain protein compare
PP_5533 +0.4 0.9 conserved protein of unknown function compare
PP_1713 +0.4 1.2 Transcriptional regulator PcaQ compare
PP_4981 +0.4 1.1 polyisoprene-binding protein, acidic stress response factor compare
PP_1571 +0.4 0.7 conserved protein of unknown function compare
PP_4597 +0.4 1.8 Cyclic pyranopterin monophosphate synthase compare
PP_5519 +0.4 1.1 conserved protein of unknown function of phage origin compare
PP_2883 +0.4 0.7 conserved protein of unknown function compare
PP_2360 +0.4 1.5 putative type 1 pili subunit CsuA/B protein compare
PP_5654 +0.4 1.0 putative phosphotriesterase compare
PP_2649 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_2083 +0.4 1.7 putative Lipase compare
PP_2044 +0.4 1.1 conserved inner membrane protein of unknown function compare
PP_5717 +0.4 1.0 conserved protein of unknown function compare
PP_3762 +0.4 1.1 Response regulator compare
PP_4109 +0.4 1.0 conserved protein of unknown function compare
PP_3353 +0.4 2.3 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_0972 +0.4 1.1 UPF0213 protein PP_0972 compare
PP_2152 +0.4 1.3 glycerophosphoryl diester phosphodiesterase compare
PP_2256 +0.4 1.5 Transcriptional regulator, Cro/CI family compare
PP_2307 +0.4 1.4 conserved protein of unknown function compare
PP_2342 +0.4 2.0 conserved protein of unknown function compare
PP_1572 +0.4 1.7 conserved protein of unknown function compare
PP_2127 +0.4 1.8 Sensor histidine kinase compare
PP_1576 +0.4 1.9 putative Immunity protein compare
PP_0948 +0.3 1.2 Phosphocarrier protein HPr compare
PP_4593 +0.3 0.7 conserved protein of unknown function compare
PP_1632 +0.3 1.0 conserved protein of unknown function compare
PP_1550 +0.3 1.5 Transcriptional regulator, Cro/CI family compare
PP_3496 +0.3 1.7 Endoribonuclease L-PSP compare
PP_1845 +0.3 1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_5232 +0.3 1.1 conserved protein of unknown function compare
PP_4273 +0.3 0.5 Transcriptional regulator, MerR family compare
PP_1567 +0.3 2.4 Capsid protein compare
PP_5145 +0.3 3.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4499 +0.3 1.2 putative maturation enzyme compare
PP_2593 +0.3 1.9 Ferric siderophore ABC transporter, permease protein compare
PP_2107 +0.3 0.7 conserved protein of unknown function compare
PP_5480 +0.3 1.6 conserved exported protein of unknown function compare
PP_0210 +0.3 2.1 putative Phycobiliprotein compare
PP_1544 +0.3 1.4 conserved protein of unknown function compare
PP_1353 +0.3 0.9 conserved membrane protein of unknown function compare
PP_5712 +0.3 1.6 conserved protein of unknown function compare
PP_4171 +0.3 3.1 conserved exported protein of unknown function compare
PP_3204 +0.3 1.6 conserved protein of unknown function compare
PP_1153 +0.3 1.6 putative lipoprotein compare
PP_0807 +0.3 1.5 DNA-binding transcriptional dual regulator (NO) compare
PP_4914 +0.3 1.5 putative phytase-like protein compare
PP_1566 +0.3 2.2 Peptidase U35 compare
PP_1053 +0.3 2.2 Type II secretion pathway protein XcpY compare
PP_4254 +0.3 0.7 conserved protein of unknown function compare
PP_2777 +0.3 1.7 putative Acyl carrier protein compare
PP_5253 +0.3 1.0 Arylesterase compare
PP_1113 +0.3 2.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4957 +0.3 1.7 conserved protein of unknown function compare
PP_1442 +0.3 1.7 conserved protein of unknown function compare
PP_1559 +0.3 1.4 Holin compare
PP_1110 +0.3 1.6 serine acetyltransferase compare
PP_1044 +0.3 1.9 Lipoprotein UxpA compare
PP_4759 +0.3 1.7 transcriptional regulator, GntR family compare
PP_4591 +0.3 1.5 Ribonuclease D compare
PP_3951 +0.3 2.0 3-oxoadipate CoA-transferase subunit A compare
PP_2517 +0.3 1.8 porin-like protein compare
PP_4207 +0.3 0.7 conserved protein of unknown function compare
PP_1192 +0.3 2.0 Acetyltransferase, GNAT family compare
PP_5099 +0.3 1.9 conserved protein of unknown function compare
PP_0168 +0.3 2.9 putative surface adhesion protein compare
PP_2995 +0.3 1.6 putative DNA topology modulation kinase FlaR compare
PP_0232 +0.3 0.7 ATP-binding taurine transporter subunit compare
PP_4102 +0.3 1.5 conserved protein of unknown function compare
PP_3020 +0.3 1.4 putative Serine/threonine protein phosphatase compare
PP_3755 +0.3 1.5 3-hydroxybutyryl-CoA dehydrogenase compare
PP_5556 +0.3 0.8 putative bacteriophage lysis protein compare
PP_1584 +0.3 1.2 conserved protein of unknown function compare
PP_2757 +0.3 1.6 putative Sugar-binding protein compare
PP_4598 +0.3 2.0 conserved membrane protein of unknown function compare
PP_0607 +0.3 0.6 putative Type IV pili biogenesis protein FimT compare
PP_4556 +0.3 1.5 conserved protein of unknown function compare
PP_3343 +0.3 1.9 nickel ABC transporter permease subunit compare
PP_0492 +0.3 1.5 formate dehydrogenase formation protein compare
PP_3862 +0.3 1.7 putative Phage assembly protein compare
PP_1558 +0.3 2.0 conserved protein of unknown function compare
PP_2541 +0.3 1.8 Transcriptional factor-related protein compare
PP_2530 +0.3 0.9 conserved protein of unknown function compare
PP_3480 +0.3 1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms