Experiment set10IT017 for Agrobacterium fabrum C58

Compare to:

Lactulose carbon source

200 most important genes:

  gene name fitness t score description  
Atu2791 -7.2 -7.0 3-isopropylmalate dehydrogenase compare
Atu0298 -7.0 -6.8 orotidine 5 compare
Atu0038 -6.7 -6.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1687 -6.6 -10.1 anthranilate phosphoribosyltransferase compare
Atu1307 -6.1 -8.4 dihydroorotase compare
Atu0400 -6.0 -7.1 orotate phosphoribosyltransferase compare
Atu0679 -6.0 -5.8 ATP phosphoribosyltransferase compare
Atu1308 -5.9 -7.9 aspartate carbamoyl transferase catalytic subunit compare
Atu2264 -5.9 -13.7 2-isopropylmalate synthase compare
Atu0099 -5.8 -13.4 prephenate dehydratase compare
Atu2289 -5.7 -19.3 anthranilate synthase component I and II compare
Atu0486 -5.7 -7.1 dihydroorotate dehydrogenase compare
Atu1688 -5.7 -6.7 indole-3-glycerol-phosphate synthase compare
Atu2709 -5.6 -20.3 3-isopropylmalate dehydratase, large subunit compare
Atu1205 -5.6 -15.4 threonine dehydratase compare
Atu1075 -5.6 -10.0 amidophosphoribosyltransferase compare
Atu2036 -5.5 -16.4 acetolactate synthase III, large subunit compare
Atu0678 -5.5 -8.4 histidyl-tRNA synthetase compare
Atu1844 -5.5 -5.3 Phosphoribosylformylglycinamidine synthetase compare
Atu2040 -5.5 -6.5 phosphoserine phosphatase compare
Atu1850 -5.4 -5.1 phosphoribosylformylglycinamidine synthetase II compare
Atu0537 -5.4 -6.4 histidinol dehydrogenase compare
Atu3706 -5.3 -10.8 D-3-phosphoglycerate dehydrogenase compare
Atu1750 -5.3 -6.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu1141 -5.3 -6.8 Phosphoribosylglycinamide synthetase compare
Atu2726 -5.1 -24.9 pyruvate carboxylase compare
Atu1588 -5.1 -10.8 homoserine dehydrogenase compare
Atu0041 -5.0 -3.5 glutamine amidotransferase compare
Atu3707 -5.0 -4.9 phosphoserine aminotransferase compare
Atu1845 -5.0 -3.7 phosphoribosylformylglycinamidine synthase I compare
Atu2718 -4.9 -10.5 homoserine O-succinyltransferase compare
Atu1030 -4.9 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3754 -4.9 -7.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0647 -4.8 -8.5 phosphoribosylamine--glycine ligase compare
Atu0399 -4.7 -10.4 dihydroorotase compare
Atu0432 -4.4 -9.7 O-succinylhomoserine sulfhydrylase compare
Atu3885 -4.3 -12.1 inositol monophosphatase compare
Atu0017 -4.3 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1140 -4.3 -5.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2790 -4.2 -3.6 3-isopropylmalate dehydratase, small subunit compare
Atu2747 -4.2 -13.2 hypothetical protein compare
Atu3755 -4.2 -5.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0641 -4.1 -5.9 hypothetical protein compare
Atu3483 -3.9 -7.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2650 -3.7 -14.0 glycerol-3-phosphate dehydrogenase compare
Atu2015 -3.7 -15.4 aminotransferase compare
Atu3147 -3.5 -15.4 oxidoreductase compare
Atu3482 -3.5 -6.8 pantoate--beta-alanine ligase compare
Atu3731 -3.4 -9.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu0040 -3.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1686 -3.2 -17.5 peptidyl-prolyl cis-trans isomerse D compare
Atu3348 -3.0 -10.1 hypothetical protein compare
Atu3148 -3.0 -9.6 sugar ABC transporter ATPase conserved
Atu3150 -2.9 -6.2 sugar ABC transporter permease conserved
Atu0030 -2.9 -2.8 phosphocarrier protein HPr compare
Atu3347 -2.8 -11.2 hypothetical protein compare
Atu3152 -2.7 -10.5 AraC family transcriptional regulator compare
Atu0401 -2.7 -8.1 fructokinase compare
Atu3783 -2.7 -16.1 glutamate synthase subunit beta compare
Atu3151 -2.7 -11.3 sugar ABC transporter substrate-binding protein conserved
Atu3351 -2.7 -11.0 sugar ABC transporter permease compare
Atu1589 -2.6 -6.7 aminotransferase, class I compare
Atu3352 -2.6 -13.4 sugar ABC transporter substrate-binding protein compare
Atu0536 -2.6 -10.9 hypothetical protein compare
Atu2548 -2.6 -15.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4616 -2.5 -2.8 dTDP-4-dehydrorhamnose reductase compare
Atu3350 -2.5 -11.6 ABC transporter permease compare
Atu3469 -2.5 -3.9 phosphoglyceromutase compare
Atu3784 -2.4 -18.8 glutamate synthase large subunit compare
Atu0047 -2.4 -14.9 malate synthase G compare
Atu3149 -2.4 -12.1 sugar ABC transporter permease compare
Atu0876 -2.4 -3.4 superoxide dismutase compare
Atu0421 -2.3 -2.5 ABC transporter, membrane spanning protein compare
Atu3739 -2.3 -2.8 phosphoglycerate kinase compare
Atu0029 -2.2 -7.9 S-adenosylhomocysteine hydrolase compare
Atu4096 -2.2 -8.8 nicotinate-nucleotide pyrophosphorylase compare
Atu1359 -2.1 -1.8 dnaK deletion suppressor protein compare
Atu4098 -2.1 -11.2 quinolinate synthetase compare
Atu3763 -2.1 -2.3 hypothetical protein compare
Atu2207 -2.0 -3.6 two component sensor kinase compare
Atu1464 -2.0 -7.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu1748 -2.0 -7.5 NIFU-like protein compare
Atu3349 -2.0 -8.2 ABC transporter permease compare
Atu1456 -2.0 -8.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0803 -2.0 -13.8 pyruvate,orthophosphate dikinase compare
Atu4097 -1.9 -10.2 L-aspartate oxidase compare
Atu4773 -1.9 -3.0 two component response regulator compare
Atu2155 -1.9 -14.4 methionine synthase compare
Atu3486 -1.9 -2.5 DeoR family transcriptional regulator compare
Atu2745 -1.9 -12.2 acetyl-coenzyme A synthetase compare
Atu1462 -1.8 -12.6 glycine cleavage system protein P2 compare
Atu0184 -1.8 -4.8 glucokinase compare
Atu1446 -1.8 -2.9 two component response regulator compare
Atu6098 -1.8 -1.6 transcriptional regulator, HTH family compare
Atu2205 -1.7 -6.3 transcriptional regulator, MarR family compare
Atu1028 -1.7 -4.2 hypothetical protein compare
Atu0598 -1.6 -6.3 phosphogluconate dehydratase compare
Atu0031 -1.6 -1.9 PTS system, IIA component compare
Atu1455 -1.6 -3.5 hypothetical protein compare
Atu3121 -1.6 -1.8 cold shock protein compare
Atu5430 -1.6 -2.0 hypothetical protein compare
Atu2684 -1.6 -3.2 hypothetical protein compare
Atu0346 -1.6 -4.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1685 -1.6 -1.6 hypothetical protein compare
Atu1454 -1.5 -5.4 siroheme synthase compare
Atu1620 -1.5 -9.5 triosephosphate isomerase compare
Atu4317 -1.5 -5.0 TetR family transcriptional regulator compare
Atu1463 -1.4 -6.7 glycine cleavage system component H compare
Atu4711 -1.4 -6.0 two component sensor kinase compare
Atu3997 -1.4 -9.3 biotin synthetase compare
Atu2209 -1.3 -3.8 pyrroline-5-carboxylate reductase compare
Atu0792 -1.3 -5.8 hypothetical protein compare
Atu3219 -1.3 -7.9 dihydroxy-acid dehydratase compare
Atu1113 -1.2 -5.5 dehydrogenase compare
Atu4541 -1.2 -2.4 carboxymuconolactone decarboxylase compare
Atu0422 -1.2 -2.0 ABC transporter, membrane spanning protein compare
Atu2800 -1.1 -2.2 precorrin-3B C17-methyltransferase compare
Atu4166 -1.1 -2.5 UDP-glucose 4-epimerase compare
Atu6114 -1.1 -2.1 hypothetical protein compare
Atu3353 -1.1 -7.0 mannose-1-phosphate guanylyltransferase compare
Atu8115 -1.1 -3.3 Hypothetical Protein compare
Atu1439 -1.1 -2.2 hypothetical protein compare
Atu3999 -1.1 -2.5 dithiobiotin synthetase compare
Atu0434 -1.1 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0190 -1.0 -5.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4615 -1.0 -6.9 glucose-1-phosphate thymidylyltransferase compare
Atu4792 -1.0 -2.5 hypothetical protein compare
Atu4617 -1.0 -6.3 dTDP-D-glucose-4,6-dehydratase compare
Atu4053 -1.0 -1.9 succinoglycan biosynthesis protein compare
Atu1445 -1.0 -3.6 two component sensor kinase compare
Atu4000 -1.0 -7.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3337 -1.0 -5.4 LacI family transcriptional regulator compare
Atu4618 -1.0 -7.0 dTDP-rhamnose-3,5-epimerase compare
Atu2249 -1.0 -1.5 hypothetical protein compare
Atu4346 -1.0 -4.1 hypothetical protein compare
Atu4614 -1.0 -4.9 glycosyltransferase compare
Atu3311 -1.0 -7.9 phosphomannose isomerase compare
Atu4001 -1.0 -5.2 3-oxoacyl-ACP synthase compare
Atu1810 -1.0 -0.6 hypothetical protein compare
Atu4514 -1.0 -3.7 RpiR family transcriptional regulator compare
Atu2554 -1.0 -1.9 lysyl-tRNA synthetase compare
Atu4217 -1.0 -1.4 TetR family transcriptional regulator compare
Atu4613 -1.0 -7.1 glycosyltransferase compare
Atu2193 -0.9 -1.1 hypothetical protein compare
Atu2163 -0.9 -1.4 hypothetical protein compare
Atu0354 -0.9 -1.7 ferric uptake regulator compare
Atu3908 -0.9 -5.0 GntR family transcriptional regulator compare
Atu3998 -0.9 -6.0 8-amino-7-oxononanoate synthase compare
Atu3732 -0.9 -4.9 hemolysin compare
Atu2183 -0.9 -4.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1163 -0.9 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2379 -0.9 -5.9 phosphomannomutase compare
Atu3963 -0.9 -5.0 GntR family transcriptional regulator compare
Atu8094 -0.8 -3.0 hypothetical protein compare
Atu2224 -0.8 -4.5 aldehyde dehydrogenase compare
Atu2123 -0.8 -3.4 methylenetetrahydrofolate reductase compare
Atu3466 -0.8 -2.1 ArsR family transcriptional regulator compare
Atu2225 -0.8 -5.6 transcriptional regulator compare
Atu2798 -0.8 -2.8 precorrin-6y methyltransferase compare
Atu1327 -0.8 -1.8 NADH-ubiquinone oxidoreductase compare
Atu0502 -0.8 -3.9 acetyl-CoA acetyltransferase compare
Atu0501 -0.8 -5.9 acyl-CoA dehydrogenase compare
Atu1546 -0.8 -3.7 transcriptional regulator, MerR family compare
Atu1405 -0.8 -3.6 transcriptional regulator, GntR family compare
Atu2406 -0.7 -1.5 hypothetical protein compare
Atu0533 -0.7 -1.7 putative inhibitor of septum formation compare
Atu0149 -0.7 -2.4 enoyl-(acyl-carrier-protein) reductase compare
Atu1077 -0.7 -2.4 DNA repair protein compare
Atu1457 -0.7 -1.4 hypothetical protein compare
Atu1770 -0.7 -4.9 glutamine synthetase compare
Atu3465 -0.7 -2.4 metallo-beta-lactamase superfamily protein compare
Atu2793 -0.7 -3.6 cobyrinic acid a,c-diamide synthase compare
Atu3730 -0.7 -0.9 hypothetical protein compare
Atu2803 -0.7 -2.6 Cobalamin biosynthesis associated protein compare
Atu2125 -0.7 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0445 -0.7 -2.5 hypothetical protein compare
Atu2746 -0.7 -2.0 hypothetical protein compare
Atu0101 -0.7 -3.2 cytochrome c compare
Atu1774 -0.7 -4.1 ABC transporter, substrate binding protein (peptide) compare
Atu2020 -0.7 -2.1 transcriptional regulator, TetR family compare
Atu2127 -0.7 -3.6 L-carnitine dehydratase compare
Atu4609 -0.7 -5.1 glycosyltransferase compare
Atu2809 -0.7 -4.5 cobalamin biosynthesis protein compare
Atu5125 -0.7 -2.9 GntR family transcriptional regulator compare
Atu0188 -0.7 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2808 -0.7 -4.0 cobyric acid synthase compare
Atu4373 -0.7 -4.5 LacI family transcriptional regulator compare
Atu0516 -0.7 -2.8 chemotaxis receiver protein compare
Atu2692 -0.7 -2.0 intracellular septation protein compare
Atu0768 -0.7 -4.6 cytochrome-c oxidase chain I compare
Atu2028 -0.7 -2.0 transcriptional regulator, ArsR family compare
Atu3668 -0.7 -2.5 siderophore biosynthesis protein compare
Atu4481 -0.7 -2.3 LacI family transcriptional regulator compare
Atu2805 -0.6 -3.2 cobalamin synthesis protein compare
Atu1219 -0.6 -0.8 hypothetical protein compare
Atu2569 -0.6 -4.2 thiamine biosynthesis protein compare
Atu2238 -0.6 -3.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0894 -0.6 -1.2 ABC transporter, membrane spanning protein compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Lactulose in Agrobacterium fabrum C58

For carbon source Lactulose across organisms