Experiment set10IT016 for Pseudomonas putida KT2440

Compare to:

L-Valine carbon source

200 most important genes:

  gene name fitness t score description  
PP_4666 -8.0 -5.5 3-hydroxyisobutyrate dehydrogenase conserved
PP_0787 -7.4 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1986 -6.8 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_3511 -6.6 -11.0 Branched-chain-amino-acid aminotransferase compare
PP_5346 -6.5 -10.9 pyruvate carboxylase subunit B compare
PP_5347 -6.5 -11.7 pyruvate carboxylase subunit A compare
PP_0422 -6.2 -7.0 Indole-3-glycerol phosphate synthase compare
PP_4400 -6.2 -10.1 Bkd operon transcriptional regulator conserved
PP_1985 -6.1 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_2335 -6.1 -11.0 methylcitrate synthase compare
PP_5015 -6.0 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -6.0 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -5.9 -5.8 tryptophan synthase alpha chain compare
PP_4678 -5.9 -18.5 Ketol-acid reductoisomerase compare
PP_0083 -5.8 -5.7 tryptophan synthase beta chain compare
PP_1995 -5.6 -10.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0290 -5.5 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -5.5 -17.0 Carbamoyl-phosphate synthase large chain compare
PP_0967 -5.4 -11.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.4 -10.0 3-isopropylmalate dehydrogenase compare
PP_5348 -5.3 -11.7 Transcriptional regulator, LysR family compare
PP_0184 -5.2 -5.0 Argininosuccinate lyase compare
PP_5014 -5.2 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -5.2 -17.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4668 -5.1 -12.8 Transcriptional regulator, LysR family conserved
PP_4999 -5.1 -3.5 dihydroorotase-like protein compare
PP_4667 -5.0 -12.5 methylmalonate-semialdehyde dehydrogenase conserved
PP_3491 -5.0 -14.1 Enoly-coenzyme A hydratase/isomerase family protein conserved
PP_4696 -5.0 -3.4 Nitrogen regulation protein NR(I) compare
PP_0966 -5.0 -12.9 Histidinol dehydrogenase compare
PP_0293 -5.0 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -4.9 -6.4 Ornithine carbamoyltransferase compare
PP_2371 -4.9 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -4.8 -10.3 phosphoserine phosphatase compare
PP_5128 -4.8 -9.7 Dihydroxy-acid dehydratase compare
PP_0417 -4.7 -18.2 Anthranilate synthase component 1 compare
PP_2334 -4.5 -7.1 2-methylisocitrate lyase compare
PP_2217 -4.5 -5.5 enoyl-CoA hydratase compare
PP_4401 -4.5 -9.8 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_4403 -4.4 -10.4 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_4724 -4.4 -9.4 Carbamoyl-phosphate synthase small chain compare
PP_0289 -4.4 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -4.3 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -4.3 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -4.3 -5.9 Acetylglutamate kinase compare
PP_1231 -4.3 -7.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1826 -4.3 -5.8 Hydrolase, isochorismatase family compare
PP_5104 -4.3 -9.1 thiazole synthase compare
PP_2001 -4.3 -13.1 O-succinylhomoserine sulfhydrylase compare
PP_0292 -4.2 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4404 -4.2 -10.3 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_3999 -4.2 -10.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -4.2 -8.5 Anthranilate phosphoribosyltransferase compare
PP_1088 -4.2 -12.8 Argininosuccinate synthase compare
PP_4402 -4.0 -11.2 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_4782 -3.9 -7.8 Phosphomethylpyrimidine kinase compare
PP_2327 -3.8 -9.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4890 -3.8 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5098 -3.7 -9.8 methionine biosynthesis protein MetW compare
PP_1428 -3.7 -3.6 Sigma factor AlgU negative regulatory protein compare
PP_2337 -3.6 -3.4 aconitate isomerase compare
PP_4922 -3.5 -11.0 Phosphomethylpyrimidine synthase compare
PP_5097 -3.5 -12.8 homoserine O-acetyltransferase compare
PP_0362 -3.4 -10.7 Biotin synthase compare
PP_2868 -3.3 -7.0 Transcriptional regulator, Cro/CI family compare
PP_0735 -3.2 -3.4 molybdopterin-synthase adenylyltransferase compare
PP_5095 -3.1 -2.2 pyrroline-5-carboxylate reductase compare
PP_1233 -3.1 -5.3 sulfurtransferase compare
PP_2336 -3.1 -4.2 aconitate hydratase 1 compare
PP_4067 -3.0 -8.9 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2433 -3.0 -3.2 conserved protein of unknown function compare
PP_1348 -3.0 -4.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2214 -2.9 -4.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0691 -2.9 -3.6 Glutamate 5-kinase compare
PP_5350 -2.9 -4.7 Transcriptional regulator, RpiR family compare
PP_1664 -2.9 -5.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1366 -2.8 -2.4 Transcriptional regulator MvaT, P16 subunit compare
PP_2370 -2.8 -3.2 conserved protein of unknown function compare
PP_4058 -2.7 -11.4 1,4-alpha-glucan branching enzyme compare
PP_4066 -2.7 -6.9 methylglutaconyl-CoA hydratase compare
PP_4065 -2.6 -9.9 methylcrotonyl-CoA carboxylase biotin-containing subunit beta conserved
PP_0339 -2.6 -3.5 Pyruvate dehydrogenase E1 component compare
PP_1025 -2.5 -11.7 2-isopropylmalate synthase compare
PP_2378 -2.5 -2.4 Fe/S biogenesis protein NfuA compare
PP_3756 -2.5 -4.4 TetR family transcriptional regulator compare
PP_1654 -2.4 -4.2 cysteine synthase B compare
PP_4342 -2.2 -3.7 flagellar synthesis regulator, putative ATPase compare
PP_0164 -2.1 -7.4 conserved protein of unknown function compare
PP_3754 -2.1 -4.7 Beta-ketothiolase BktB compare
PP_4799 -2.0 -4.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4902 -1.9 -3.5 Oligoribonuclease compare
PP_5188 -1.9 -5.6 putative transcriptional regulator (AsnC/Lrp family) conserved
PP_0366 -1.9 -6.8 dethiobiotin synthetase compare
PP_4964 -1.9 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4364 -1.9 -2.8 putative Anti-sigma F factor antagonist compare
PP_0393 -1.9 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5227 -1.9 -7.4 diaminopimelate decarboxylase compare
PP_2929 -1.8 -8.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4695 -1.8 -7.5 Sensory box histidine kinase compare
PP_3492 -1.8 -6.7 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PP_3649 -1.7 -4.4 Transcriptional regulator, GntR family compare
PP_5329 -1.7 -4.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4754 -1.7 -6.7 Transcriptional regulator, TetR family compare
PP_4064 -1.7 -8.9 isovaleryl-CoA dehydrogenase conserved
PP_1127 -1.7 -7.7 Carboxylesterase compare
PP_0963 -1.7 -4.5 putative BolA family protein compare
PP_4722 -1.6 -4.7 Transcription elongation factor GreA compare
PP_5295 -1.6 -2.8 conserved protein of unknown function compare
PP_4984 -1.6 -8.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0261 -1.6 -6.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5331 -1.6 -3.8 Long-chain acyl-CoA thioester hydrolase compare
PP_1344 -1.6 -2.4 conserved protein of unknown function compare
PP_2442 -1.6 -3.0 conserved protein of unknown function, DUF480 family compare
PP_5393 -1.6 -2.2 putative metal-binding chaperone compare
PP_2302 -1.5 -4.5 DNA-binding, ATP-dependent protease compare
PP_4120 -1.5 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_0363 -1.5 -7.8 8-amino-7-oxononanoate synthase compare
PP_4136 -1.5 -1.7 Transcriptional regulator, LuxR family compare
PP_5327 -1.3 -6.5 putative phosphate ABC transporter, permease subunit compare
PP_1764 -1.3 -6.0 Phosphoglycolate phosphatase 2 compare
PP_4679 -1.3 -2.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0365 -1.3 -6.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2928 -1.3 -5.5 Saccharopine dehydrogenase compare
PP_4122 -1.3 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5303 -1.3 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5085 -1.3 -6.0 malic enzyme B compare
PP_0364 -1.3 -5.6 pimeloyl-[acp] methyl ester esterase compare
PP_1734 -1.2 -2.5 Probable septum site-determining protein MinC compare
PP_2328 -1.2 -2.9 Phosphoadenosine phosphosulfate reductase compare
PP_0420 -1.2 -3.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4008 -1.2 -5.4 ATP-dependent serine protease compare
PP_5093 -1.2 -1.7 twitching motility protein compare
PP_5146 -1.1 -5.2 RNA pyrophosphohydrolase compare
PP_1353 -1.1 -2.3 conserved membrane protein of unknown function compare
PP_2215 -1.1 -2.8 acetyl-CoA acetyltransferase compare
PP_5114 -1.1 -1.9 putative adenine methyltransferase compare
PP_3105 -1.1 -3.4 conserved membrane protein of unknown function compare
PP_3753 -1.1 -3.2 Transcriptional regulator, AraC family compare
PP_2568 -1.1 -1.4 Ring-cleaving dioxygenase compare
PP_5328 -1.1 -3.1 putative phosphate transport system permease protein compare
PP_5580 -1.1 -2.0 protein of unknown function compare
PP_0434 -1.1 -7.4 Anhydro-N-acetylmuramic acid kinase compare
PP_0274 -1.1 -1.8 putative transcriptional regulator containing HTH domain compare
PP_4546 -1.1 -2.5 ATP-dependent helicase HrpA compare
PP_0291 -1.1 -1.5 conserved protein of unknown function compare
PP_1355 -1.0 -9.0 Muropeptide permease AmpG compare
PP_2168 -1.0 -5.8 Transaldolase compare
PP_1673 -1.0 -3.9 cobyrinate a,c-diamide synthase compare
PP_1675 -1.0 -6.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3102 -1.0 -2.9 conserved protein of unknown function compare
PP_1681 -1.0 -6.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4130 -1.0 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1493 -1.0 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4827 -1.0 -6.6 Precorrin-2 C(20)-methyltransferase compare
PP_4480 -1.0 -5.8 arginine N-succinyltransferase, subunit alpha compare
PP_0401 -1.0 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_0757 -1.0 -2.9 conserved protein of unknown function compare
PP_5217 -1.0 -6.8 Polyphosphate kinase compare
PP_4874 -1.0 -0.8 50S ribosomal protein L9 compare
PP_3662 -1.0 -5.0 conserved protein of unknown function compare
PP_3519 -1.0 -1.2 putative Lipoprotein compare
PP_4826 -1.0 -3.7 Precorrin-3B C17-methyltransferase compare
PP_3731 -0.9 -4.9 Transcriptional regulator, TetR family compare
PP_4891 -0.9 -3.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1326 -0.9 -3.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0127 -0.9 -4.1 Thiol:disulfide interchange protein compare
PP_5621 -0.9 -2.1 protein of unknown function compare
PP_4829 -0.9 -2.5 putative precorrin-3B synthase compare
PP_2145 -0.9 -3.6 beta-N-acetylglucosaminidase compare
PP_1528 -0.9 -1.3 conserved protein of unknown function compare
PP_0405 -0.9 -7.1 conserved protein of unknown function compare
PP_1702 -0.9 -1.6 Recombination-associated protein RdgC compare
PP_2223 -0.9 -4.3 conserved protein of unknown function compare
PP_5600 -0.9 -1.4 conserved protein of unknown function compare
PP_4693 -0.9 -2.9 RNA polymerase-binding transcription factor DksA compare
PP_5232 -0.9 -1.3 conserved protein of unknown function compare
PP_4681 -0.9 -1.6 conserved protein of unknown function compare
PP_4129 -0.9 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4988 -0.9 -3.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0120 -0.9 -4.0 putative zinc ABC transporter compare
PP_5052 -0.9 -1.8 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_4628 -0.8 -3.8 conserved protein of unknown function compare
PP_1906 -0.8 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_3506 -0.8 -1.8 Magnesium chelatase, subunit ChII compare
PP_4247 -0.8 -1.4 Exonuclease compare
PP_0937 -0.8 -3.3 endoribonuclease G (RNAse G) compare
PP_2756 -0.8 -1.4 conserved protein of unknown function compare
PP_3507 -0.8 -5.8 Aerobic cobaltochelatase subunit CobN compare
PP_1142 -0.8 -1.1 conserved protein of unknown function compare
PP_0048 -0.8 -1.0 conserved protein of unknown function compare
PP_5486 -0.8 -1.4 conserved protein of unknown function compare
PP_0725 -0.8 -2.9 conserved hypothetical TPR repeat protein compare
PP_0117 -0.8 -3.2 Zn(2+) ABC transporter - permease subunit compare
PP_4641 -0.8 -4.6 putative transporter compare
PP_2333 -0.8 -1.9 GntR family transcriptional regulator compare
PP_4126 -0.8 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_3951 -0.8 -2.6 3-oxoadipate CoA-transferase subunit A compare
PP_4199 -0.7 -0.9 putative Lipoprotein compare
PP_2414 -0.7 -2.0 conserved exported protein of unknown function compare
PP_0914 -0.7 -4.7 GGDEF domain protein compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source L-Valine in Pseudomonas putida KT2440

For carbon source L-Valine across organisms