Experiment set10IT016 for Agrobacterium fabrum C58

Compare to:

Lactulose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0486 -7.0 -6.8 dihydroorotate dehydrogenase compare
Atu1844 -6.6 -4.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2791 -6.6 -9.0 3-isopropylmalate dehydrogenase compare
Atu1308 -6.5 -6.9 aspartate carbamoyl transferase catalytic subunit compare
Atu0432 -6.5 -9.9 O-succinylhomoserine sulfhydrylase compare
Atu0679 -6.4 -6.3 ATP phosphoribosyltransferase compare
Atu1687 -6.2 -10.0 anthranilate phosphoribosyltransferase compare
Atu1141 -6.2 -8.2 Phosphoribosylglycinamide synthetase compare
Atu2709 -6.0 -19.1 3-isopropylmalate dehydratase, large subunit compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2289 -5.7 -18.7 anthranilate synthase component I and II compare
Atu1850 -5.7 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1750 -5.7 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -5.6 -12.6 prephenate dehydratase compare
Atu3706 -5.6 -9.4 D-3-phosphoglycerate dehydrogenase compare
Atu2264 -5.6 -14.8 2-isopropylmalate synthase compare
Atu0298 -5.5 -9.9 orotidine 5 compare
Atu2726 -5.5 -23.6 pyruvate carboxylase compare
Atu1688 -5.4 -7.4 indole-3-glycerol-phosphate synthase compare
Atu1140 -5.3 -5.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1845 -5.3 -7.1 phosphoribosylformylglycinamidine synthase I compare
Atu1075 -5.2 -8.2 amidophosphoribosyltransferase compare
Atu1588 -5.1 -11.4 homoserine dehydrogenase compare
Atu0399 -5.1 -8.5 dihydroorotase compare
Atu1205 -5.1 -13.6 threonine dehydratase compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu0038 -5.0 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2040 -4.9 -6.7 phosphoserine phosphatase compare
Atu2036 -4.8 -17.0 acetolactate synthase III, large subunit compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0647 -4.8 -7.3 phosphoribosylamine--glycine ligase compare
Atu3754 -4.7 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0537 -4.7 -8.4 histidinol dehydrogenase compare
Atu3482 -4.6 -10.5 pantoate--beta-alanine ligase compare
Atu1307 -4.6 -9.7 dihydroorotase compare
Atu0400 -4.5 -5.5 orotate phosphoribosyltransferase compare
Atu3885 -4.4 -9.9 inositol monophosphatase compare
Atu0678 -4.3 -7.5 histidyl-tRNA synthetase compare
Atu3348 -4.1 -10.0 hypothetical protein compare
Atu2718 -4.0 -10.8 homoserine O-succinyltransferase compare
Atu2747 -3.9 -15.6 hypothetical protein compare
Atu3147 -3.8 -17.9 oxidoreductase compare
Atu2650 -3.8 -14.0 glycerol-3-phosphate dehydrogenase compare
Atu3707 -3.8 -4.6 phosphoserine aminotransferase compare
Atu2790 -3.8 -4.0 3-isopropylmalate dehydratase, small subunit compare
Atu3755 -3.7 -7.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2015 -3.6 -14.8 aminotransferase compare
Atu2684 -3.5 -4.3 hypothetical protein compare
Atu3347 -3.5 -10.3 hypothetical protein compare
Atu3483 -3.4 -7.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1686 -3.4 -17.4 peptidyl-prolyl cis-trans isomerse D compare
Atu1359 -3.3 -2.0 dnaK deletion suppressor protein compare
Atu0040 -3.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4773 -3.1 -3.2 two component response regulator compare
Atu1589 -3.0 -7.2 aminotransferase, class I compare
Atu3149 -2.9 -12.4 sugar ABC transporter permease compare
Atu0030 -2.9 -2.7 phosphocarrier protein HPr compare
Atu1446 -2.8 -3.1 two component response regulator compare
Atu3350 -2.8 -12.6 ABC transporter permease compare
Atu3783 -2.8 -15.3 glutamate synthase subunit beta compare
Atu3152 -2.8 -7.6 AraC family transcriptional regulator compare
Atu0641 -2.8 -6.0 hypothetical protein compare
Atu3739 -2.7 -4.2 phosphoglycerate kinase compare
Atu3731 -2.7 -8.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu3148 -2.7 -10.6 sugar ABC transporter ATPase conserved
Atu2548 -2.7 -15.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3151 -2.6 -8.6 sugar ABC transporter substrate-binding protein conserved
Atu0029 -2.6 -7.4 S-adenosylhomocysteine hydrolase compare
Atu3150 -2.6 -9.8 sugar ABC transporter permease conserved
Atu3351 -2.6 -11.5 sugar ABC transporter permease compare
Atu3349 -2.6 -9.9 ABC transporter permease compare
Atu1030 -2.6 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3784 -2.5 -19.5 glutamate synthase large subunit compare
Atu3352 -2.5 -11.7 sugar ABC transporter substrate-binding protein compare
Atu0536 -2.4 -8.8 hypothetical protein compare
Atu0401 -2.3 -7.1 fructokinase compare
Atu0876 -2.3 -2.8 superoxide dismutase compare
Atu4098 -2.3 -13.3 quinolinate synthetase compare
Atu4096 -2.2 -9.1 nicotinate-nucleotide pyrophosphorylase compare
Atu2155 -2.1 -14.9 methionine synthase compare
Atu4097 -2.1 -10.5 L-aspartate oxidase compare
Atu3763 -2.0 -2.3 hypothetical protein compare
Atu1620 -2.0 -12.3 triosephosphate isomerase compare
Atu1462 -2.0 -13.0 glycine cleavage system protein P2 compare
Atu0184 -2.0 -3.3 glucokinase compare
Atu1456 -1.9 -10.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2745 -1.9 -12.9 acetyl-coenzyme A synthetase compare
Atu0803 -1.9 -12.3 pyruvate,orthophosphate dikinase compare
Atu0434 -1.8 -4.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1748 -1.8 -10.3 NIFU-like protein compare
Atu1454 -1.8 -7.8 siroheme synthase compare
Atu0047 -1.8 -13.3 malate synthase G compare
Atu0031 -1.8 -2.0 PTS system, IIA component compare
Atu2207 -1.8 -3.2 two component sensor kinase compare
Atu1463 -1.8 -7.1 glycine cleavage system component H compare
Atu3486 -1.7 -2.6 DeoR family transcriptional regulator compare
Atu3997 -1.7 -11.7 biotin synthetase compare
Atu4711 -1.7 -5.3 two component sensor kinase compare
Atu3469 -1.6 -3.3 phosphoglyceromutase compare
Atu1455 -1.6 -4.7 hypothetical protein compare
Atu1464 -1.6 -5.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu0422 -1.6 -1.5 ABC transporter, membrane spanning protein compare
Atu0598 -1.5 -7.8 phosphogluconate dehydratase compare
Atu2125 -1.5 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0346 -1.5 -3.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4541 -1.5 -3.9 carboxymuconolactone decarboxylase compare
Atu0792 -1.5 -5.8 hypothetical protein compare
Atu4317 -1.5 -4.4 TetR family transcriptional regulator compare
Atu2205 -1.4 -6.6 transcriptional regulator, MarR family compare
Atu2209 -1.4 -4.1 pyrroline-5-carboxylate reductase compare
Atu1810 -1.4 -1.6 hypothetical protein compare
Atu3120 -1.3 -1.7 hypothetical protein compare
Atu3219 -1.3 -9.0 dihydroxy-acid dehydratase compare
Atu4000 -1.2 -8.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu6098 -1.2 -1.3 transcriptional regulator, HTH family compare
Atu1457 -1.2 -1.7 hypothetical protein compare
Atu8115 -1.2 -3.4 Hypothetical Protein compare
Atu1904 -1.1 -3.9 transcriptional regulator compare
Atu6114 -1.1 -2.2 hypothetical protein compare
Atu0690 -1.1 -2.1 hypothetical protein compare
Atu0189 -1.1 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3908 -1.0 -6.4 GntR family transcriptional regulator compare
Atu1113 -1.0 -4.0 dehydrogenase compare
Atu0941 -1.0 -1.1 hypothetical protein compare
Atu2472 -1.0 -1.5 hypothetical protein compare
Atu4001 -1.0 -5.6 3-oxoacyl-ACP synthase compare
Atu3095 -1.0 -3.3 hypothetical protein compare
Atu3337 -1.0 -5.6 LacI family transcriptional regulator compare
Atu0188 -1.0 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0769 -0.9 -1.3 protoheme IX farnesyltransferase compare
Atu0421 -0.9 -1.5 ABC transporter, membrane spanning protein compare
Atu3998 -0.9 -5.6 8-amino-7-oxononanoate synthase compare
Atu1685 -0.9 -1.1 hypothetical protein compare
Atu1182 -0.9 -1.8 hypothetical protein compare
Atu2376 -0.9 -0.8 hypothetical protein compare
Atu3999 -0.9 -1.3 dithiobiotin synthetase compare
Atu5125 -0.9 -4.0 GntR family transcriptional regulator compare
Atu0101 -0.8 -4.9 cytochrome c compare
Atu1286 -0.8 -4.5 hypothetical protein compare
Atu4346 -0.8 -3.7 hypothetical protein compare
Atu4187 -0.8 -1.2 tRNA-Met compare
Atu4514 -0.8 -4.3 RpiR family transcriptional regulator compare
Atu0331 -0.8 -1.3 sigma-54 modulation protein compare
Atu1445 -0.8 -2.7 two component sensor kinase compare
Atu2805 -0.8 -4.0 cobalamin synthesis protein compare
Atu2555 -0.8 -2.6 L-lysine 2,3-aminomutase compare
Atu4792 -0.8 -1.9 hypothetical protein compare
Atu2554 -0.8 -1.9 lysyl-tRNA synthetase compare
Atu3963 -0.8 -4.8 GntR family transcriptional regulator compare
Atu2127 -0.8 -4.6 L-carnitine dehydratase compare
Atu1163 -0.8 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0205 -0.8 -5.0 methylmalonate-semialdehyde dehydrogenase compare
Atu3730 -0.8 -0.7 hypothetical protein compare
Atu8012 -0.8 -1.4 hypothetical protein compare
Atu0986 -0.8 -1.2 hypothetical protein compare
Atu2396 -0.8 -3.1 urease accessory protein compare
Atu3732 -0.8 -4.1 hemolysin compare
Atu3712 -0.8 -1.2 hypothetical protein compare
Atu4217 -0.8 -1.0 TetR family transcriptional regulator compare
Atu1604 -0.7 -5.6 poly-beta-hydroxybutyrate synthase compare
Atu0590 -0.7 -3.9 transcriptional regulator repressor compare
Atu2802 -0.7 -3.3 precorrin-8X methylmutase compare
Atu0723 -0.7 -1.4 FAD dependent oxidoreductase compare
Atu4686 -0.7 -2.0 hypothetical protein compare
Atu2793 -0.7 -2.6 cobyrinic acid a,c-diamide synthase compare
Atu2067 -0.7 -0.8 hypothetical protein compare
Atu3290 -0.7 -3.4 phosphomethylpyrimidine kinase compare
Atu2367 -0.7 -1.8 hypothetical protein compare
Atu2569 -0.7 -5.5 thiamine biosynthesis protein compare
Atu2606 -0.7 -2.8 transcriptional regulator, GntR family compare
Atu0501 -0.7 -5.2 acyl-CoA dehydrogenase compare
Atu2798 -0.7 -3.2 precorrin-6y methyltransferase compare
Atu1469 -0.7 -2.3 hypothetical protein compare
Atu2368 -0.7 -0.7 hypothetical protein compare
Atu0895 -0.7 -1.6 ABC transporter, substrate binding protein compare
Atu4685 -0.7 -3.5 LacI family transcriptional regulator compare
Atu2831 -0.7 -3.1 glucose inhibited division protein A compare
Atu1754 -0.7 -1.7 hypothetical protein compare
Atu2809 -0.7 -4.5 cobalamin biosynthesis protein compare
Atu0502 -0.6 -3.4 acetyl-CoA acetyltransferase compare
Atu0635 -0.6 -3.5 hypothetical protein compare
Atu0923 -0.6 -3.5 hypothetical protein compare
Atu2224 -0.6 -3.8 aldehyde dehydrogenase compare
Atu2762 -0.6 -2.3 hypothetical protein compare
Atu8052 -0.6 -1.2 hypothetical protein compare
Atu0771 -0.6 -4.0 cytochrome c oxidase subunit III compare
Atu0837 -0.6 -3.8 transcriptional regulator, MarR family compare
Atu2683 -0.6 -1.4 hypothetical protein compare
Atu2824 -0.6 -2.5 hypothetical protein compare
Atu0300 -0.6 -3.3 methyltransferase compare
Atu0842 -0.6 -1.6 hypothetical protein compare
Atu1774 -0.6 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu2249 -0.6 -1.0 hypothetical protein compare
Atu1542 -0.6 -2.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1775 -0.6 -2.1 polyketide biosynthesis associated protein compare
Atu1242 -0.6 -4.2 cytochrome oxidase assembly factor compare
Atu2800 -0.6 -2.7 precorrin-3B C17-methyltransferase compare
Atu0228 -0.6 -2.2 hypothetical protein compare
Atu8165 -0.6 -1.3 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Lactulose in Agrobacterium fabrum C58

For carbon source Lactulose across organisms