Experiment set10IT014 for Pseudomonas putida KT2440

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
PP_1079 -7.2 -5.0 Ornithine carbamoyltransferase compare
PP_0966 -6.8 -9.3 Histidinol dehydrogenase compare
PP_2371 -6.5 -4.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -6.2 -6.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -5.8 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -5.5 -15.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.4 -16.7 Ketol-acid reductoisomerase compare
PP_0082 -5.4 -7.4 tryptophan synthase alpha chain compare
PP_4723 -5.4 -16.6 Carbamoyl-phosphate synthase large chain compare
PP_4909 -5.4 -9.0 phosphoserine phosphatase compare
PP_0787 -5.4 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4890 -5.3 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -5.3 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -5.2 -7.1 Indole-3-glycerol phosphate synthase compare
PP_0290 -5.0 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4999 -4.9 -3.3 dihydroorotase-like protein compare
PP_5015 -4.9 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0293 -4.9 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -4.7 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -4.7 -8.4 tryptophan synthase beta chain compare
PP_1088 -4.6 -11.4 Argininosuccinate synthase compare
PP_1995 -4.5 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0965 -4.4 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -4.4 -6.0 Branched-chain-amino-acid aminotransferase compare
PP_0289 -4.4 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4696 -4.4 -5.9 Nitrogen regulation protein NR(I) compare
PP_1428 -4.3 -2.9 Sigma factor AlgU negative regulatory protein compare
PP_5095 -4.3 -2.5 pyrroline-5-carboxylate reductase compare
PP_2088 -4.2 -4.6 RNA polymerase sigma factor SigX compare
PP_3999 -4.0 -11.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -3.9 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -3.7 -4.4 Acetylglutamate kinase compare
PP_5701 -3.7 -2.7 conserved protein of unknown function compare
PP_0417 -3.6 -12.9 Anthranilate synthase component 1 compare
PP_4724 -3.5 -6.6 Carbamoyl-phosphate synthase small chain compare
PP_5128 -3.5 -6.7 Dihydroxy-acid dehydratase compare
PP_5098 -3.5 -6.8 methionine biosynthesis protein MetW compare
PP_0420 -3.4 -8.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1988 -3.4 -8.2 3-isopropylmalate dehydrogenase compare
PP_2001 -3.4 -8.3 O-succinylhomoserine sulfhydrylase compare
PP_1985 -3.3 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_0184 -3.3 -6.0 Argininosuccinate lyase compare
PP_5097 -3.3 -11.1 homoserine O-acetyltransferase compare
PP_1231 -3.2 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4828 -3.2 -1.3 Precorrin-8X methylmutase compare
PP_2327 -3.1 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3505 -3.1 -2.3 conserved protein of unknown function compare
PP_1986 -2.9 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_5337 -2.9 -7.1 LysR family transcriptional regulator compare
PP_4947 -2.6 -16.3 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase conserved
PP_0339 -2.6 -3.5 Pyruvate dehydrogenase E1 component compare
PP_2328 -2.6 -5.8 Phosphoadenosine phosphosulfate reductase compare
PP_2168 -2.4 -6.4 Transaldolase compare
PP_0421 -2.4 -5.0 Anthranilate phosphoribosyltransferase compare
PP_4199 -2.4 -1.4 putative Lipoprotein compare
PP_0292 -2.4 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4695 -2.4 -8.0 Sensory box histidine kinase compare
PP_0801 -2.2 -1.8 conserved exported protein of unknown function compare
PP_5575 -2.2 -2.3 conserved protein of unknown function compare
PP_2370 -2.2 -2.5 conserved protein of unknown function compare
PP_3946 -2.0 -1.9 HTH-type transcriptional repressor NicR compare
PP_0291 -2.0 -2.5 conserved protein of unknown function compare
PP_1994 -2.0 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_1025 -1.9 -7.3 2-isopropylmalate synthase compare
PP_3924 -1.9 -2.1 conserved protein of unknown function compare
PP_4700 -1.8 -3.2 pantothenate synthetase compare
PP_5338 -1.8 -2.6 aspartate ammonia-lyase compare
PP_4922 -1.7 -7.5 Phosphomethylpyrimidine synthase compare
PP_0362 -1.7 -7.9 Biotin synthase compare
PP_3245 -1.7 -1.6 conserved protein of unknown function compare
PP_1233 -1.7 -3.7 sulfurtransferase compare
PP_0366 -1.7 -3.9 dethiobiotin synthetase compare
PP_0833 -1.6 -2.0 queuine tRNA-ribosyltransferase compare
PP_3506 -1.6 -2.7 Magnesium chelatase, subunit ChII compare
PP_5104 -1.6 -6.3 thiazole synthase compare
PP_5309 -1.6 -1.5 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4910 -1.6 -1.9 conserved protein of unknown function compare
PP_4355 -1.5 -2.5 flagellar export apparatus subunit compare
PP_0691 -1.5 -2.2 Glutamate 5-kinase compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0735 -1.4 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1041 -1.4 -1.7 twin arginine protein export complex subunit compare
PP_4789 -1.4 -3.0 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1109 -1.4 -7.9 Transcriptional regulator, GntR family compare
PP_5212 -1.4 -4.1 Oxidoreductase, iron-sulfur-binding compare
PP_1097 -1.4 -1.1 Methionine--tRNA ligase compare
PP_4782 -1.4 -3.4 Phosphomethylpyrimidine kinase compare
PP_4699 -1.4 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0377 -1.4 -2.1 coenzyme PQQ synthesis protein D compare
PP_5028 -1.3 -2.6 proline iminopeptidase compare
PP_4684 -1.3 -4.3 conserved protein of unknown function with kinase-like domain compare
PP_2390 -1.3 -4.2 Transcriptional regulator, LysR family compare
PP_3603 -1.3 -4.6 Transcriptional regulator, GntR family compare
PP_5176 -1.3 -1.9 conserved protein of unknown function compare
PP_5322 -1.3 -4.0 putative metal ion transporter compare
PP_5217 -1.3 -8.2 Polyphosphate kinase compare
PP_4482 -1.3 -2.8 Transcriptional regulator, AraC family compare
PP_2337 -1.3 -1.4 aconitate isomerase compare
PP_2720 -1.2 -0.9 conserved protein of unknown function compare
PP_1629 -1.2 -3.2 Protein RecA compare
PP_2060 -1.2 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2044 -1.2 -1.7 conserved inner membrane protein of unknown function compare
PP_1664 -1.2 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_1426 -1.2 -6.3 L-aspartate oxidase compare
PP_4832 -1.2 -2.4 Precorrin-6x reductase compare
PP_2137 -1.2 -1.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_2103 -1.1 -1.9 conserved protein of unknown function compare
PP_0164 -1.1 -3.9 conserved protein of unknown function compare
PP_0852 -1.1 -1.6 Transcriptional regulator, Cro/CI family compare
PP_2375 -1.1 -6.4 cobalamin-dependent methionine synthase compare
PP_1348 -1.1 -2.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3447 -1.1 -1.1 conserved membrane protein of unknown function compare
PP_3790 -1.1 -4.2 diaminopimelate epimerase compare
PP_3508 -1.1 -1.6 Protein CobW compare
PP_1366 -1.1 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_4778 -1.1 -2.2 23S rRNA pseudouridine 2457 synthase compare
PP_4984 -1.0 -4.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1734 -1.0 -2.2 Probable septum site-determining protein MinC compare
PP_4937 -1.0 -1.8 toluene tolerance protein compare
PP_4362 -1.0 -2.7 conserved protein of unknown function compare
PP_1826 -1.0 -1.1 Hydrolase, isochorismatase family compare
PP_1111 -1.0 -2.4 putative Synthetase compare
PP_4720 -1.0 -1.6 putative RNA binding protein compare
PP_0607 -1.0 -1.8 putative Type IV pili biogenesis protein FimT compare
PP_5303 -1.0 -2.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3884 -1.0 -1.7 Phage holin, lambda family compare
PP_1637 -1.0 -3.0 Transcriptional regulator, LysR family compare
PP_4860 -1.0 -5.0 putative Mannose-6-phosphate isomerase compare
PP_3507 -1.0 -4.9 Aerobic cobaltochelatase subunit CobN compare
PP_4797 -0.9 -1.4 conserved protein of unknown function compare
PP_1062 -0.9 -2.3 MutT/nudix family protein compare
PP_5279 -0.9 -1.8 conserved protein of unknown function compare
PP_3314 -0.9 -1.8 Heat shock protein, HSP20 family compare
PP_5085 -0.9 -3.1 malic enzyme B compare
PP_0365 -0.9 -4.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4569 -0.9 -3.1 conserved protein of unknown function compare
PP_2196 -0.9 -1.3 agmatinase compare
PP_2908 -0.9 -2.3 DNA-binding transcriptional repressor compare
PP_1654 -0.9 -1.7 cysteine synthase B compare
PP_0937 -0.9 -3.1 endoribonuclease G (RNAse G) compare
PP_4875 -0.9 -2.3 conserved membrane protein of unknown function compare
PP_5588 -0.9 -2.1 conserved protein of unknown function compare
PP_4836 -0.9 -1.7 conserved exported protein of unknown function compare
PP_2073 -0.9 -1.6 Acetyltransferase, GNAT family compare
PP_4593 -0.9 -1.4 conserved protein of unknown function compare
PP_2655 -0.9 -2.0 conserved protein of unknown function compare
PP_3052 -0.8 -1.0 conserved protein of unknown function compare
PP_2107 -0.8 -1.2 conserved protein of unknown function compare
PP_0516 -0.8 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_2928 -0.8 -2.9 Saccharopine dehydrogenase compare
PP_1676 -0.8 -2.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1410 -0.8 -1.1 conserved protein of unknown function compare
PP_2824 -0.8 -2.3 Transcriptional regulator, TetR family compare
PP_1186 -0.8 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_4830 -0.8 -2.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_0363 -0.8 -4.5 8-amino-7-oxononanoate synthase compare
PP_0938 -0.8 -4.0 conserved protein of unknown function compare
PP_1656 -0.8 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1678 -0.8 -2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4204 -0.8 -2.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1673 -0.8 -2.7 cobyrinate a,c-diamide synthase compare
PP_4263 -0.8 -1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_t29 -0.8 -0.9 tRNA-Ala compare
PP_4826 -0.8 -2.6 Precorrin-3B C17-methyltransferase compare
PP_5317 -0.8 -1.6 Probable chorismate pyruvate-lyase compare
PP_4480 -0.8 -3.4 arginine N-succinyltransferase, subunit alpha compare
PP_5203 -0.8 -2.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_0127 -0.8 -2.6 Thiol:disulfide interchange protein compare
PP_4946 -0.8 -2.8 sodium/L-proline transporter compare
PP_4129 -0.8 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1441 -0.8 -2.4 tRNA (cmo5U34)-methyltransferase compare
PP_5675 -0.7 -2.2 conserved protein of unknown function compare
PP_1912 -0.7 -2.0 Phosphate acyltransferase compare
PP_2336 -0.7 -2.0 aconitate hydratase 1 compare
PP_2290 -0.7 -2.4 conserved protein of unknown function compare
PP_3234 -0.7 -2.0 Heat shock protein, HSP20 family compare
PP_1979 -0.7 -1.3 putative Hydrolase compare
PP_2765 -0.7 -1.2 putative Sulfonate monooxygenase MsuD compare
PP_2999 -0.7 -0.9 Glyoxalase family protein compare
PP_0874 -0.7 -1.1 conserved protein of unknown function compare
PP_0063 -0.7 -1.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0119 -0.7 -1.6 putative zinc uptake regulation protein ZUR compare
PP_2882 -0.7 -1.4 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_5073 -0.7 -1.4 conserved exported protein of unknown function compare
PP_4837 -0.7 -1.2 conserved protein of unknown function compare
PP_3590 -0.7 -2.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2070 -0.7 -1.1 Transcriptional regulator, AraC family compare
PP_0262 -0.7 -1.6 conserved protein of unknown function compare
PP_2244 -0.7 -3.6 putative transmembrane protein TauE like compare
PP_2409 -0.7 -1.6 cobalt-zinc-cadmium resistance protein compare
PP_3105 -0.7 -1.7 conserved membrane protein of unknown function compare
PP_1675 -0.7 -3.0 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0364 -0.7 -3.3 pimeloyl-[acp] methyl ester esterase compare
PP_4337 -0.7 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2402 -0.7 -0.9 putative Sensor histidine kinase compare
PP_1681 -0.7 -3.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4977 -0.7 -3.7 5,10-methylenetetrahydrofolate reductase compare
PP_5445 -0.7 -1.4 conserved protein of unknown function compare
PP_5001 -0.7 -1.9 protease HslVU, ATPase component compare
PP_4827 -0.7 -3.6 Precorrin-2 C(20)-methyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Proline in Pseudomonas putida KT2440

For carbon source L-Proline across organisms