Experiment set10IT013 for Pseudomonas putida KT2440

Compare to:

L-Lysine carbon source

200 most important genes:

  gene name fitness t score description  
PP_1079 -6.6 -4.6 Ornithine carbamoyltransferase compare
PP_3597 -6.5 -4.5 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_1985 -6.4 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.3 -9.6 3-isopropylmalate dehydrogenase compare
PP_2001 -6.1 -8.4 O-succinylhomoserine sulfhydrylase compare
PP_3591 -6.0 -4.1 Delta 1-piperideine-2-carboxylate reductase compare
PP_3593 -5.9 -8.2 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) compare
PP_0422 -5.8 -6.9 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.8 -6.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3594 -5.8 -7.9 L-lysine and D-lysine ABC transporter, permease component 1 (from data) conserved
PP_4909 -5.7 -4.0 phosphoserine phosphatase compare
PP_0966 -5.7 -11.0 Histidinol dehydrogenase compare
PP_2371 -5.6 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5185 -5.6 -3.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0417 -5.6 -18.8 Anthranilate synthase component 1 compare
PP_0290 -5.5 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5258 -5.5 -5.3 L-piperidine-6-carboxylate dehydrogenase conserved
PP_0967 -5.4 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -5.4 -14.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.4 -16.3 Ketol-acid reductoisomerase compare
PP_2910 -5.4 -10.3 L-2-hydroxyglutarate oxidase compare
PP_5015 -5.4 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5097 -5.3 -13.8 homoserine O-acetyltransferase compare
PP_3596 -5.3 -8.9 D-lysine oxidase compare
PP_5098 -5.3 -8.0 methionine biosynthesis protein MetW compare
PP_1088 -5.2 -3.6 Argininosuccinate synthase compare
PP_1986 -5.2 -3.6 3-isopropylmalate dehydratase small subunit compare
PP_5260 -5.2 -8.6 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) conserved
PP_1231 -5.1 -7.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5128 -5.0 -10.4 Dihydroxy-acid dehydratase compare
PP_5155 -4.9 -6.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0421 -4.9 -9.4 Anthranilate phosphoribosyltransferase compare
PP_4493 -4.9 -16.7 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_4724 -4.8 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_3999 -4.8 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -4.7 -3.3 Argininosuccinate lyase compare
PP_5257 -4.6 -12.2 L-pipecolate oxidase conserved
PP_0083 -4.6 -7.0 tryptophan synthase beta chain compare
PP_0691 -4.5 -3.1 Glutamate 5-kinase compare
PP_4999 -4.4 -2.8 dihydroorotase-like protein compare
PP_0382 -4.3 -9.3 5-aminopentanamidase conserved
PP_0293 -4.3 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5289 -4.3 -4.2 Acetylglutamate kinase compare
PP_0214 -4.2 -8.1 4-aminobutyrate aminotransferase compare
PP_4890 -4.2 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4723 -4.2 -11.6 Carbamoyl-phosphate synthase large chain compare
PP_5014 -4.1 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -4.1 -4.0 Nitrogen regulation protein NR(I) compare
PP_0787 -4.1 -2.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4699 -4.1 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4679 -4.0 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -3.9 -6.3 tryptophan synthase alpha chain compare
PP_3946 -3.9 -1.6 HTH-type transcriptional repressor NicR compare
PP_3592 -3.9 -7.8 Transcriptional regulator, RpiR family compare
PP_0965 -3.9 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2414 -3.9 -2.2 conserved exported protein of unknown function compare
PP_5095 -3.7 -2.1 pyrroline-5-carboxylate reductase compare
PP_0547 -3.7 -6.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1428 -3.7 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_4482 -3.7 -5.3 Transcriptional regulator, AraC family compare
PP_3595 -3.7 -5.6 L-lysine and D-lysine ABC transporter, permease component 2 (from data) conserved
PP_5337 -3.6 -6.9 LysR family transcriptional regulator compare
PP_4695 -3.6 -12.4 Sensory box histidine kinase compare
PP_3511 -3.6 -5.6 Branched-chain-amino-acid aminotransferase compare
PP_0164 -3.3 -5.9 conserved protein of unknown function compare
PP_0832 -3.3 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0289 -3.3 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_1664 -3.2 -5.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1493 -3.2 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0916 -3.1 -2.7 Amino acid transporter LysE compare
PP_0949 -3.1 -7.7 putative ATP-binding protein UPF0042 compare
PP_0834 -3.0 -2.0 Sec translocation complex subunit YajC compare
PP_4124 -3.0 -5.4 NADH-quinone oxidoreductase subunit G compare
PP_2168 -3.0 -6.7 Transaldolase compare
PP_0384 -3.0 -6.9 Transcriptional regulator, AsnC family conserved
PP_0213 -2.9 -4.9 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_0356 -2.9 -5.8 malate synthase G compare
PP_4129 -2.9 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4828 -2.9 -1.1 Precorrin-8X methylmutase compare
PP_5216 -2.9 -3.4 exopolyphosphatase compare
PP_3603 -2.8 -4.8 Transcriptional regulator, GntR family compare
PP_0127 -2.8 -2.6 Thiol:disulfide interchange protein compare
PP_4364 -2.7 -3.5 putative Anti-sigma F factor antagonist compare
PP_3105 -2.7 -2.0 conserved membrane protein of unknown function compare
PP_0292 -2.6 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2370 -2.6 -2.4 conserved protein of unknown function compare
PP_3484 -2.6 -3.3 Response regulator receiver protein compare
PP_1025 -2.5 -6.2 2-isopropylmalate synthase compare
PP_0236 -2.5 -2.7 NAD(P)H-dependent FMN reductase subunit compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_2378 -2.3 -1.6 Fe/S biogenesis protein NfuA compare
PP_2581 -2.3 -1.2 conserved protein of unknown function compare
PP_3730 -2.3 -2.1 Transcriptional regulatory protein AruR compare
PP_4130 -2.3 -5.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4964 -2.3 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_2327 -2.3 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1716 -2.3 -1.9 Transcriptional regulator, Cro/CI family compare
PP_4131 -2.3 -6.1 NADH-quinone oxidoreductase subunit N compare
PP_2302 -2.2 -6.1 DNA-binding, ATP-dependent protease compare
PP_0420 -2.2 -5.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2402 -2.2 -2.4 putative Sensor histidine kinase compare
PP_2820 -2.2 -2.3 HTH-type transcriptional regulator nfxB compare
PP_3649 -2.2 -3.4 Transcriptional regulator, GntR family compare
PP_3110 -2.2 -2.2 protein of unknown function compare
PP_1317 -2.1 -3.8 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5338 -2.1 -2.5 aspartate ammonia-lyase compare
PP_0125 -2.1 -2.6 putative cytochrome c-type protein compare
PP_4874 -2.0 -1.1 50S ribosomal protein L9 compare
PP_5146 -2.0 -6.2 RNA pyrophosphohydrolase compare
PP_1941 -2.0 -2.9 conserved protein of unknown function compare
PP_0383 -2.0 -6.6 Lysine 2-monooxygenase conserved
PP_4937 -2.0 -3.5 toluene tolerance protein compare
PP_0833 -1.9 -1.3 queuine tRNA-ribosyltransferase compare
PP_2433 -1.9 -2.0 conserved protein of unknown function compare
PP_1328 -1.9 -2.2 Protein MraZ compare
PP_2615 -1.9 -2.2 hemolysin-coregulated protein compare
PP_4108 -1.9 -3.1 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_2326 -1.9 -4.6 Universal stress protein compare
PP_5085 -1.9 -4.4 malic enzyme B compare
PP_4227 -1.8 -1.9 conserved protein of unknown function compare
PP_3924 -1.8 -3.5 conserved protein of unknown function compare
PP_1381 -1.8 -1.3 4-carboxymuconolactone decarboxylase compare
PP_1344 -1.8 -1.8 conserved protein of unknown function compare
PP_0888 -1.7 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_5528 -1.7 -1.6 conserved protein of unknown function compare
PP_5580 -1.7 -1.5 protein of unknown function compare
PP_5706 -1.7 -1.9 Sec translocation complex - SecG subunit compare
PP_0435 -1.7 -9.0 Peptidase, M23/M37 family compare
PP_2387 -1.7 -1.7 conserved protein of unknown function compare
PP_2253 -1.7 -2.0 Transcriptional regulator, GntR family compare
PP_4120 -1.7 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_5324 -1.7 -2.1 Response regulator compare
PP_1233 -1.7 -2.7 sulfurtransferase compare
PP_5028 -1.6 -2.9 proline iminopeptidase compare
PP_0627 -1.6 -1.2 conserved protein of unknown function compare
PP_1111 -1.6 -5.8 putative Synthetase compare
PP_0063 -1.6 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0711 -1.6 -2.1 putative hydrolase compare
PP_0735 -1.6 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4121 -1.6 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_3728 -1.6 -4.9 Sensor histidine kinase/response regulator compare
PP_3089 -1.6 -3.2 conserved protein of unknown function compare
PP_0393 -1.5 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_t12 -1.5 -1.0 tRNA-Thr compare
PP_3198 -1.5 -1.7 Ferredoxin, 2Fe-2S compare
PP_5659 -1.5 -2.1 protein of unknown function compare
PP_3392 -1.5 -1.1 conserved protein of unknown function compare
PP_5346 -1.5 -4.4 pyruvate carboxylase subunit B compare
PP_1598 -1.5 -2.8 regulatory intramembrane protein RIP zinc protease compare
PP_0291 -1.4 -1.8 conserved protein of unknown function compare
PP_2046 -1.4 -2.4 Transcriptional regulator, LysR family compare
PP_2999 -1.4 -1.3 Glyoxalase family protein compare
PP_4787 -1.4 -1.5 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1303 -1.4 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_3693 -1.4 -1.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4486 -1.4 -4.2 lysine / arginine / ornithine ABC transporter - periplasmic binding protein compare
PP_3286 -1.4 -2.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4116 -1.4 -4.2 isocitrate lyase compare
PP_3648 -1.4 -2.3 Carboxymuconolactone decarboxylase family protein compare
PP_3919 -1.4 -2.7 conserved protein of unknown function compare
PP_5145 -1.3 -9.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4720 -1.3 -1.0 putative RNA binding protein compare
PP_3359 -1.3 -2.0 putative Hydroxycinnamic acid degradation regulator compare
PP_3727 -1.3 -5.2 Amino-acid permease RocE compare
PP_4329 -1.3 -1.2 FlhB domain protein compare
PP_4988 -1.3 -5.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5240 -1.3 -1.7 Response regulator compare
PP_4690 -1.3 -1.7 Rieske 2Fe-2S family protein compare
PP_4009 -1.3 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_0340 -1.3 -5.8 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1318 -1.3 -3.2 Cytochrome b compare
PP_0881 -1.3 -3.2 dipeptide ABC transporter - putative membrane subunit compare
PP_4701 -1.3 -0.8 glucose-6-phosphate isomerase compare
PP_1758 -1.3 -3.2 putative sulfurtransferase containing rhodanese-like domain compare
PP_2475 -1.3 -3.2 Transcriptional regulator, TetR family compare
PP_4546 -1.2 -3.1 ATP-dependent helicase HrpA compare
PP_4532 -1.2 -1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1906 -1.2 -2.0 ribosomal large subunit pseudouridine synthase C compare
PP_0905 -1.2 -1.1 conserved exported protein of unknown function compare
PP_5327 -1.2 -4.1 putative phosphate ABC transporter, permease subunit compare
PP_5114 -1.2 -1.4 putative adenine methyltransferase compare
PP_1813 -1.2 -3.1 ComEA-related protein compare
PP_0152 -1.2 -1.6 conserved exported protein of unknown function compare
PP_4793 -1.2 -1.2 conserved protein of unknown function compare
PP_5422 -1.2 -2.6 hypothetical protein compare
PP_3398 -1.2 -1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1297 -1.2 -4.9 putative amino-acid ABC transporter-binding protein YhdW compare
PP_3806 -1.2 -1.8 Hydrolase, isochorismatase family compare
PP_1036 -1.2 -4.0 membrane-bound lytic murein transglycosylase F compare
PP_1734 -1.2 -2.0 Probable septum site-determining protein MinC compare
PP_2328 -1.2 -2.6 Phosphoadenosine phosphosulfate reductase compare
PP_1097 -1.2 -1.2 Methionine--tRNA ligase compare
PP_5621 -1.2 -1.7 protein of unknown function compare
PP_0414 -1.1 -2.6 Polyamine ABC transporter, permease protein compare
PP_3903 -1.1 -0.9 conserved protein of unknown function compare
PP_3258 -1.1 -1.4 conserved protein of unknown function compare
PP_4143 -1.1 -1.9 conserved protein of unknown function compare
PP_0246 -1.1 -1.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_4799 -1.1 -1.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2826 -1.1 -2.1 Transcriptional regulator MexT compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source L-Lysine in Pseudomonas putida KT2440

For carbon source L-Lysine across organisms