Experiment set10IT012 for Pseudomonas putida KT2440

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
PP_5202 -5.2 -3.5 putative cell division protein compare
PP_0834 -4.8 -3.2 Sec translocation complex subunit YajC compare
PP_3511 -4.7 -7.2 Branched-chain-amino-acid aminotransferase compare
PP_5225 -4.7 -1.8 frataxin compare
PP_2217 -4.6 -4.5 enoyl-CoA hydratase compare
PP_3052 -4.6 -1.8 conserved protein of unknown function compare
PP_4678 -4.5 -11.7 Ketol-acid reductoisomerase compare
PP_0422 -4.5 -5.4 Indole-3-glycerol phosphate synthase compare
PP_0874 -4.3 -2.9 conserved protein of unknown function compare
PP_1233 -4.3 -4.2 sulfurtransferase compare
PP_0083 -4.0 -3.9 tryptophan synthase beta chain compare
PP_t12 -3.9 -1.5 tRNA-Thr compare
PP_1138 -3.8 -4.5 branched chain amino acid transporter - ATP binding subunit compare
PP_5017 -3.6 -1.4 Sec-independent protein translocase protein TatB compare
PP_2878 -3.6 -1.9 conserved protein of unknown function compare
PP_4680 -3.5 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1679 -3.5 -2.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4726 -3.5 -2.4 Chaperone protein DnaJ compare
PP_3903 -3.4 -2.3 conserved protein of unknown function compare
PP_4116 -3.4 -9.3 isocitrate lyase compare
PP_1995 -3.4 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4696 -3.2 -2.2 Nitrogen regulation protein NR(I) compare
PP_4999 -3.2 -2.2 dihydroorotase-like protein compare
PP_0293 -3.2 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1317 -3.2 -5.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4695 -3.1 -10.0 Sensory box histidine kinase compare
PP_3245 -3.1 -1.7 conserved protein of unknown function compare
PP_1141 -3.1 -7.5 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit conserved
PP_1293 -3.0 -1.7 molybdopterin synthase small subunit compare
PP_4909 -3.0 -6.4 phosphoserine phosphatase compare
PP_0184 -3.0 -4.1 Argininosuccinate lyase compare
PP_2370 -3.0 -2.9 conserved protein of unknown function compare
PP_1088 -3.0 -6.4 Argininosuccinate synthase compare
PP_5128 -3.0 -6.3 Dihydroxy-acid dehydratase compare
PP_0848 -3.0 -2.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0082 -2.9 -5.3 tryptophan synthase alpha chain compare
PP_4065 -2.9 -6.8 methylcrotonyl-CoA carboxylase biotin-containing subunit beta conserved
PP_3508 -2.9 -3.3 Protein CobW compare
PP_5185 -2.9 -5.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -2.8 -5.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0001 -2.8 -1.9 probable chromosome-partitioning protein compare
PP_2168 -2.8 -7.7 Transaldolase compare
PP_4937 -2.7 -4.5 toluene tolerance protein compare
PP_2868 -2.6 -5.3 Transcriptional regulator, Cro/CI family compare
PP_1428 -2.6 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_4532 -2.6 -1.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0949 -2.6 -5.3 putative ATP-binding protein UPF0042 compare
PP_4064 -2.6 -8.8 isovaleryl-CoA dehydrogenase conserved
PP_1826 -2.6 -3.0 Hydrolase, isochorismatase family compare
PP_5448 -2.6 -3.2 conserved protein of unknown function compare
PP_0691 -2.6 -2.5 Glutamate 5-kinase compare
PP_4699 -2.5 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2510 -2.4 -1.8 conserved protein of unknown function compare
PP_5098 -2.4 -5.0 methionine biosynthesis protein MetW compare
PP_0401 -2.4 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_4782 -2.4 -3.6 Phosphomethylpyrimidine kinase compare
PP_4273 -2.4 -1.2 Transcriptional regulator, MerR family compare
PP_1079 -2.4 -4.8 Ornithine carbamoyltransferase compare
PP_0966 -2.4 -5.8 Histidinol dehydrogenase compare
PP_4787 -2.3 -2.5 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5659 -2.3 -2.3 protein of unknown function compare
PP_4122 -2.3 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2136 -2.3 -4.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0967 -2.2 -5.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4828 -2.2 -1.1 Precorrin-8X methylmutase compare
PP_0276 -2.2 -1.2 Transcriptional regulator, Cro/CI family compare
PP_2299 -2.2 -3.6 Trigger factor compare
PP_4124 -2.2 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_5014 -2.2 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_3924 -2.2 -2.8 conserved protein of unknown function compare
PP_0356 -2.1 -4.4 malate synthase G compare
PP_2880 -2.1 -1.8 Transcriptional regulator, TetR family compare
PP_0362 -2.1 -7.1 Biotin synthase compare
PP_5329 -2.1 -4.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1099 -2.1 -2.1 Cold shock protein CapB compare
PP_3999 -2.1 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1319 -2.1 -4.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1318 -2.1 -5.6 Cytochrome b compare
PP_1137 -2.0 -5.4 high-affinity branched-chain amino acid transporter, ATP binding conserved
PP_0274 -2.0 -1.5 putative transcriptional regulator containing HTH domain compare
PP_2371 -2.0 -4.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5505 -2.0 -2.0 conserved transmembrane protein of unknown function compare
PP_0396 -2.0 -7.4 conserved protein of unknown function compare
PP_0289 -1.9 -4.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1994 -1.9 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_5706 -1.9 -1.8 Sec translocation complex - SecG subunit compare
PP_4922 -1.9 -7.2 Phosphomethylpyrimidine synthase compare
PP_1348 -1.9 -3.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0292 -1.9 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0984 -1.8 -3.1 conserved membrane protein of unknown function compare
PP_4120 -1.8 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_4723 -1.8 -7.7 Carbamoyl-phosphate synthase large chain compare
PP_3551 -1.8 -1.7 DNA-binding response regulator, LuxR family compare
PP_4482 -1.8 -3.0 Transcriptional regulator, AraC family compare
PP_1139 -1.8 -7.1 branched chain amino acid transporter - permease subunit conserved
PP_3951 -1.8 -4.2 3-oxoadipate CoA-transferase subunit A compare
PP_4377 -1.8 -3.8 putative Flagellin FlaG compare
PP_5248 -1.8 -1.0 putative hydrolase compare
PP_1140 -1.8 -5.3 branched chain amino acid transporter - permease subunit conserved
PP_2302 -1.8 -3.9 DNA-binding, ATP-dependent protease compare
PP_4403 -1.8 -4.5 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_5445 -1.8 -1.3 conserved protein of unknown function compare
PP_5104 -1.7 -3.8 thiazole synthase compare
PP_0694 -1.7 -3.2 conserved protein of unknown function compare
PP_2196 -1.7 -1.5 agmatinase compare
PP_4067 -1.7 -4.6 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5203 -1.7 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_4156 -1.7 -1.7 Transcriptional regulator, LysR family compare
PP_5327 -1.7 -4.6 putative phosphate ABC transporter, permease subunit compare
PP_1812 -1.7 -0.9 conserved protein of unknown function compare
PP_4866 -1.7 -6.1 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_1493 -1.7 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5274 -1.7 -1.7 conserved protein of unknown function compare
PP_5155 -1.6 -2.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4060 -1.6 -7.4 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4890 -1.6 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4910 -1.6 -1.1 conserved protein of unknown function compare
PP_0235 -1.6 -2.8 Peroxidase compare
PP_2013 -1.6 -3.8 conserved protein of unknown function compare
PP_4129 -1.6 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1632 -1.6 -1.1 conserved protein of unknown function compare
PP_4913 -1.6 -2.4 conserved protein of unknown function compare
PP_2144 -1.6 -2.8 Transcriptional regulator, TetR family compare
PP_1763 -1.6 -2.8 putative oxidoreductase compare
PP_4902 -1.6 -1.9 Oligoribonuclease compare
PP_2001 -1.6 -4.0 O-succinylhomoserine sulfhydrylase compare
PP_5097 -1.6 -5.9 homoserine O-acetyltransferase compare
PP_2929 -1.6 -4.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1231 -1.5 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4722 -1.5 -2.7 Transcription elongation factor GreA compare
PP_4984 -1.5 -5.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4261 -1.5 -3.6 cation-transporting P-type ATPase compare
PP_0625 -1.5 -6.0 Chaperone protein ClpB compare
PP_1644 -1.5 -2.9 NAD(P)H dehydrogenase (quinone) compare
PP_3198 -1.5 -1.6 Ferredoxin, 2Fe-2S compare
PP_0770 -1.5 -1.9 PemI-like protein compare
PP_0290 -1.5 -3.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5145 -1.5 -10.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4066 -1.5 -2.0 methylglutaconyl-CoA hydratase compare
PP_1241 -1.5 -2.5 conserved protein of unknown function compare
PP_0092 -1.5 -2.4 putative lipoprotein compare
PP_4504 -1.5 -1.2 conserved exported protein of unknown function compare
PP_2080 -1.5 -7.6 NAD-specific glutamate dehydrogenase conserved
PP_4864 -1.5 -5.1 High-affinity branched-chain amino acid transport ATP-binding protein BraF conserved
PP_4130 -1.5 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4214 -1.5 -2.0 pyoverdine biosynthesis related protein compare
PP_0364 -1.4 -3.8 pimeloyl-[acp] methyl ester esterase compare
PP_4517 -1.4 -1.1 conserved protein of unknown function compare
PP_4814 -1.4 -1.4 ATP-dependent protease La domain protein compare
PP_2172 -1.4 -2.8 conserved exported protein of unknown function compare
PP_1387 -1.4 -2.0 Probable HTH-type transcriptional regulator TtgR compare
PP_4226 -1.4 -1.2 conserved protein of unknown function compare
PP_1860 -1.4 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
PP_5600 -1.4 -1.2 conserved protein of unknown function compare
PP_3532 -1.4 -1.3 Transcriptional regulator, AsnC family compare
PP_5337 -1.4 -3.2 LysR family transcriptional regulator compare
PP_4207 -1.4 -2.6 conserved protein of unknown function compare
PP_3926 -1.4 -1.5 short-chain dehydrogenase compare
PP_0035 -1.4 -2.2 putative bactoprenol-linked glycose transferase compare
PP_4400 -1.4 -2.5 Bkd operon transcriptional regulator conserved
PP_4700 -1.4 -1.0 pantothenate synthetase compare
PP_3875 -1.4 -2.6 conserved protein of unknown function compare
PP_2336 -1.4 -1.7 aconitate hydratase 1 compare
PP_4865 -1.4 -5.0 High-affinity branched-chain amino acid transport system permease protein BraE conserved
PP_5201 -1.4 -2.0 conserved protein of unknown function, UPF0149 family compare
PP_5652 -1.4 -1.0 conserved protein of unknown function, phage origin compare
PP_0164 -1.4 -4.1 conserved protein of unknown function compare
PP_3186 -1.4 -4.2 putative Transcriptional activator compare
PP_4121 -1.4 -1.9 NADH-quinone oxidoreductase subunit C/D compare
PP_2030 -1.4 -2.0 conserved protein of unknown function compare
PP_1326 -1.4 -1.5 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5114 -1.4 -1.3 putative adenine methyltransferase compare
PP_1082 -1.3 -2.1 bacterioferritin compare
PP_3654 -1.3 -2.7 leucine-responsive regulatory protein compare
PP_4863 -1.3 -5.5 high-affinity branched-chain amino acid transporter, ATP-binding conserved
PP_2214 -1.3 -1.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1454 -1.3 -1.9 conserved protein of unknown function compare
PP_2272 -1.3 -4.1 conserved protein of unknown function compare
PP_5547 -1.3 -1.9 protein of unknown function compare
PP_0566 -1.3 -0.9 translation-related factor compare
PP_0397 -1.3 -6.9 protein kinase compare
PP_5055 -1.3 -2.3 Sulfurtransferase compare
PP_0191 -1.3 -1.5 Transcriptional regulatory protein AlgQ compare
PP_3312 -1.3 -1.0 putative Heat shock protein compare
PP_4265 -1.3 -2.3 DNA-binding transcriptional dual regulator compare
PP_2764 -1.3 -1.3 FMN reductase (NADPH) compare
PP_0653 -1.3 -1.1 conserved protein of unknown function compare
PP_4179 -1.3 -4.7 Chaperone protein HtpG compare
PP_0735 -1.3 -0.9 molybdopterin-synthase adenylyltransferase compare
PP_4254 -1.3 -1.0 conserved protein of unknown function compare
PP_2619 -1.3 -2.7 FHA domain protein compare
PP_2378 -1.3 -0.9 Fe/S biogenesis protein NfuA compare
PP_3014 -1.3 -1.6 conserved exported protein of unknown function compare
PP_0421 -1.3 -2.8 Anthranilate phosphoribosyltransferase compare
PP_0948 -1.3 -1.3 Phosphocarrier protein HPr compare
PP_1985 -1.3 -2.7 3-isopropylmalate dehydratase large subunit compare
PP_4867 -1.2 -5.1 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) conserved
PP_3318 -1.2 -1.3 conserved protein of unknown function compare
PP_4340 -1.2 -2.6 response regulator for chemotactic signal transduction compare
PP_1096 -1.2 -1.2 putative electron transport complex protein compare


Specific Phenotypes

For 31 genes in this experiment

For carbon source L-Leucine in Pseudomonas putida KT2440

For carbon source L-Leucine across organisms