Experiment set10IT009 for Pseudomonas putida KT2440

Compare to:

L-Glutamine carbon source

200 most important genes:

  gene name fitness t score description  
PP_1079 -5.7 -7.8 Ornithine carbamoyltransferase compare
PP_4724 -5.7 -6.8 Carbamoyl-phosphate synthase small chain compare
PP_4723 -5.2 -15.6 Carbamoyl-phosphate synthase large chain compare
PP_2371 -5.1 -7.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -4.9 -9.3 phosphoserine phosphatase compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_5014 -4.6 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -4.6 -3.2 Nitrogen regulation protein NR(I) compare
PP_0082 -4.4 -8.4 tryptophan synthase alpha chain compare
PP_0290 -4.4 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3999 -4.0 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0417 -3.9 -20.3 Anthranilate synthase component 1 compare
PP_1068 -3.9 -3.9 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1986 -3.8 -5.2 3-isopropylmalate dehydratase small subunit compare
PP_0967 -3.8 -13.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5185 -3.6 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -3.6 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -3.6 -10.2 methionine biosynthesis protein MetW compare
PP_0422 -3.5 -7.7 Indole-3-glycerol phosphate synthase compare
PP_5015 -3.5 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4680 -3.4 -14.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -3.3 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -3.3 -6.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0293 -3.2 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1066 -3.2 -5.8 C4-dicarboxylate transport transcriptional regulatory protein conserved
PP_1067 -3.2 -11.2 Sensor histidine kinase conserved
PP_5289 -3.2 -5.7 Acetylglutamate kinase compare
PP_0966 -3.2 -10.9 Histidinol dehydrogenase compare
PP_3511 -3.2 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_4678 -3.2 -13.4 Ketol-acid reductoisomerase compare
PP_1985 -3.1 -6.7 3-isopropylmalate dehydratase large subunit compare
PP_1995 -3.1 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1071 -3.1 -6.4 glutamate / aspartate ABC transporter - periplasmic binding protein conserved
PP_1025 -3.1 -12.5 2-isopropylmalate synthase compare
PP_0083 -3.1 -8.9 tryptophan synthase beta chain compare
PP_5095 -3.1 -3.0 pyrroline-5-carboxylate reductase compare
PP_5097 -3.1 -12.2 homoserine O-acetyltransferase compare
PP_5338 -3.0 -2.1 aspartate ammonia-lyase compare
PP_0292 -2.9 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0735 -2.9 -3.7 molybdopterin-synthase adenylyltransferase compare
PP_1988 -2.9 -9.8 3-isopropylmalate dehydrogenase compare
PP_0965 -2.9 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5104 -2.9 -9.3 thiazole synthase compare
PP_4799 -2.9 -4.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0421 -2.8 -8.2 Anthranilate phosphoribosyltransferase compare
PP_5303 -2.8 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2328 -2.8 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_0137 -2.8 -12.3 glutamate/aspartate-proton DAACS transporter conserved
PP_5337 -2.8 -7.5 LysR family transcriptional regulator compare
PP_2370 -2.7 -3.0 conserved protein of unknown function compare
PP_0164 -2.7 -11.9 conserved protein of unknown function compare
PP_4890 -2.7 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -2.7 -8.6 Dihydroxy-acid dehydratase compare
PP_4700 -2.7 -1.9 pantothenate synthetase compare
PP_4679 -2.7 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -2.7 -11.0 Argininosuccinate synthase compare
PP_4892 -2.6 -7.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1231 -2.6 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -2.6 -10.0 O-succinylhomoserine sulfhydrylase compare
PP_0184 -2.6 -7.3 Argininosuccinate lyase compare
PP_1233 -2.5 -6.3 sulfurtransferase compare
PP_0339 -2.5 -1.7 Pyruvate dehydrogenase E1 component compare
PP_4782 -2.4 -5.9 Phosphomethylpyrimidine kinase compare
PP_1664 -2.4 -4.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_1069 -2.3 -8.1 glutamate / aspartate ABC transporter - permease subunit conserved
PP_1070 -2.3 -6.9 glutamate / aspartate ABC transporter - permease subunit conserved
PP_4922 -2.0 -10.3 Phosphomethylpyrimidine synthase compare
PP_0787 -2.0 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4891 -2.0 -6.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4895 -2.0 -3.2 tRNA dimethylallyltransferase compare
PP_1912 -1.9 -5.6 Phosphate acyltransferase compare
PP_0594 -1.8 -9.4 Transcriptional regulator, TetR family compare
PP_0291 -1.7 -2.3 conserved protein of unknown function compare
PP_0833 -1.7 -1.6 queuine tRNA-ribosyltransferase compare
PP_0691 -1.7 -3.7 Glutamate 5-kinase compare
PP_0420 -1.7 -6.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2999 -1.6 -2.3 Glyoxalase family protein compare
PP_4129 -1.6 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3926 -1.6 -2.9 short-chain dehydrogenase compare
PP_4964 -1.5 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1348 -1.5 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3790 -1.5 -6.9 diaminopimelate epimerase compare
PP_4860 -1.5 -8.8 putative Mannose-6-phosphate isomerase conserved
PP_4941 -1.5 -6.8 conserved exported protein of unknown function compare
PP_1366 -1.4 -2.3 Transcriptional regulator MvaT, P16 subunit compare
PP_1493 -1.4 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5329 -1.4 -5.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0949 -1.4 -5.8 putative ATP-binding protein UPF0042 compare
PP_0185 -1.4 -8.1 Positive alginate biosynthesis regulatory protein compare
PP_3924 -1.4 -2.6 conserved protein of unknown function compare
PP_4726 -1.4 -2.8 Chaperone protein DnaJ compare
PP_0393 -1.4 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1215 -1.4 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4131 -1.3 -5.1 NADH-quinone oxidoreductase subunit N compare
PP_1303 -1.3 -5.7 Sulfate adenylyltransferase subunit 2 compare
PP_4828 -1.3 -1.8 Precorrin-8X methylmutase compare
PP_3649 -1.3 -3.7 Transcriptional regulator, GntR family compare
PP_5346 -1.3 -7.7 pyruvate carboxylase subunit B compare
PP_5090 -1.3 -2.3 putative cell division protein compare
PP_5328 -1.3 -4.7 putative phosphate transport system permease protein compare
PP_4937 -1.3 -4.7 toluene tolerance protein compare
PP_4121 -1.3 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4739 -1.2 -2.7 conserved protein of unknown function compare
PP_4942 -1.2 -2.9 conserved protein of unknown function compare
PP_4364 -1.2 -4.8 putative Anti-sigma F factor antagonist compare
PP_0914 -1.2 -7.4 GGDEF domain protein compare
PP_0362 -1.2 -8.0 Biotin synthase compare
PP_2414 -1.2 -1.7 conserved exported protein of unknown function compare
PP_4910 -1.1 -1.8 conserved protein of unknown function compare
PP_1994 -1.1 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_0435 -1.1 -8.5 Peptidase, M23/M37 family compare
PP_1972 -1.1 -5.8 aromatic-amino-acid aminotransferase compare
PP_4577 -1.1 -4.4 UPF0271 protein PP_4577 compare
PP_1654 -1.1 -2.6 cysteine synthase B compare
PP_5347 -1.1 -7.4 pyruvate carboxylase subunit A compare
PP_0937 -1.1 -3.7 endoribonuclease G (RNAse G) compare
PP_4575 -1.0 -2.7 Urea amidolyase-related protein compare
PP_5327 -1.0 -5.7 putative phosphate ABC transporter, permease subunit compare
PP_4576 -1.0 -6.3 allophanate hydrolase subunit compare
PP_1468 -1.0 -2.4 Tyrosine recombinase XerD compare
PP_5600 -1.0 -3.3 conserved protein of unknown function compare
PP_1736 -1.0 -3.2 conserved protein of unknown function compare
PP_3603 -1.0 -3.9 Transcriptional regulator, GntR family compare
PP_0978 -1.0 -1.8 conserved protein of unknown function compare
PP_1734 -1.0 -2.0 Probable septum site-determining protein MinC compare
PP_4695 -0.9 -4.8 Sensory box histidine kinase compare
PP_1304 -0.9 -5.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4262 -0.9 -3.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4008 -0.9 -4.6 ATP-dependent serine protease compare
PP_5203 -0.9 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_2160 -0.9 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4789 -0.9 -3.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3505 -0.9 -1.9 conserved protein of unknown function compare
PP_5236 -0.9 -4.9 conserved protein of unknown function compare
PP_5093 -0.9 -1.5 twitching motility protein compare
PP_1216 -0.9 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3946 -0.9 -1.8 HTH-type transcriptional repressor NicR compare
PP_0058 -0.8 -7.8 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1679 -0.8 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3052 -0.8 -1.4 conserved protein of unknown function compare
PP_4124 -0.8 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_4120 -0.8 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_4684 -0.8 -3.6 conserved protein of unknown function with kinase-like domain compare
PP_4263 -0.8 -3.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5114 -0.8 -1.3 putative adenine methyltransferase compare
PP_4804 -0.8 -2.2 RlpA-like lipoprotein compare
PP_4722 -0.8 -2.4 Transcription elongation factor GreA compare
PP_2903 -0.8 -2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5348 -0.8 -5.5 Transcriptional regulator, LysR family compare
PP_5227 -0.8 -3.7 diaminopimelate decarboxylase compare
PP_0340 -0.8 -5.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1770 -0.8 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2379 -0.8 -2.6 putative cytochrome oxidase biogenesis protein compare
PP_2441 -0.8 -2.1 conserved protein of unknown function compare
PP_1309 -0.8 -3.5 conserved exported protein of unknown function compare
PP_5594 -0.8 -1.9 conserved protein of unknown function compare
PP_4126 -0.8 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_1716 -0.7 -1.3 Transcriptional regulator, Cro/CI family compare
PP_1678 -0.7 -3.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0852 -0.7 -1.9 Transcriptional regulator, Cro/CI family compare
PP_5146 -0.7 -4.1 RNA pyrophosphohydrolase compare
PP_0963 -0.7 -1.8 putative BolA family protein compare
PP_3507 -0.7 -5.4 Aerobic cobaltochelatase subunit CobN compare
PP_0123 -0.7 -3.8 DNA polymerase I, 5 compare
PP_1317 -0.7 -3.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0048 -0.7 -1.1 conserved protein of unknown function compare
PP_3637 -0.7 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4130 -0.7 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1208 -0.7 -1.8 conserved protein of unknown function, SlyX family compare
PP_5145 -0.7 -6.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0984 -0.7 -3.3 conserved membrane protein of unknown function compare
PP_5706 -0.7 -1.6 Sec translocation complex - SecG subunit compare
PP_0401 -0.7 -0.8 Ribosomal RNA small subunit methyltransferase A compare
PP_5508 -0.7 -1.1 conserved protein of unknown function compare
PP_4396 -0.7 -2.4 conserved protein of unknown function compare
PP_4913 -0.7 -2.9 conserved protein of unknown function compare
PP_3506 -0.7 -3.0 Magnesium chelatase, subunit ChII compare
PP_1374 -0.7 -3.5 conserved protein of unknown function compare
PP_4342 -0.7 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_1792 -0.7 -5.9 Glycosyl transferase, group 2 family protein compare
PP_5052 -0.7 -2.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2088 -0.7 -1.9 RNA polymerase sigma factor SigX compare
PP_4122 -0.7 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4961 -0.7 -1.1 putative Lipoprotein compare
PP_0218 -0.6 -4.1 Sensory box protein compare
PP_5658 -0.6 -2.5 protein of unknown function compare
PP_4944 -0.6 -2.4 Carbamoyltransferase compare
PP_1793 -0.6 -5.8 Glycosyl transferase, group 2 family protein compare
PP_3863 -0.6 -3.5 putative Phage tail protein compare
PP_3415 -0.6 -4.1 Transcriptional regulator, LacI family compare
PP_5423 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_4917 -0.6 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1790 -0.6 -2.5 putative Acylneuraminate cytidylyltransferase compare
PP_2305 -0.6 -3.0 conserved protein of unknown function compare
PP_5448 -0.6 -2.3 conserved protein of unknown function compare
PP_4966 -0.6 -1.2 transcriptional regulator of methionine metabolism compare
PP_3757 -0.6 -2.2 Chemotaxis protein CheY compare
PP_2848 -0.6 -2.2 urease accessory protein compare
PP_2309 -0.6 -1.0 conserved protein of unknown function compare
PP_2046 -0.6 -1.6 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Glutamine in Pseudomonas putida KT2440

For carbon source L-Glutamine across organisms