Experiment set10IT009 for Pseudomonas putida KT2440

Compare to:

L-Glutamine carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +3.9 38.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +3.8 35.6 Sensor protein GacS compare
PP_1656 +3.6 17.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.7 8.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5232 +2.6 7.4 conserved protein of unknown function compare
PP_0856 +2.2 8.7 conserved lipoprotein of unknown function compare
PP_4171 +1.9 14.7 conserved exported protein of unknown function compare
PP_0674 +1.7 13.8 ADP/ATP ratio sensor and inhibitor of translation compare
PP_1232 +1.7 12.9 conserved exported protein of unknown function compare
PP_4902 +1.7 4.6 Oligoribonuclease compare
PP_1898 +1.6 5.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4710 +1.5 12.8 tRNA pseudouridine 55 synthase compare
PP_1113 +1.5 10.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0117 +1.5 7.8 Zn(2+) ABC transporter - permease subunit compare
PP_5313 +1.4 4.2 DNA-binding protein HU-alpha compare
PP_4994 +1.3 8.0 conserved protein of unknown function compare
PP_0120 +1.3 9.1 putative zinc ABC transporter compare
PP_0118 +1.2 8.1 zinc import ATP-binding protein compare
PP_2387 +1.2 4.9 conserved protein of unknown function compare
PP_0725 +1.2 7.2 conserved hypothetical TPR repeat protein compare
PP_4172 +1.2 6.7 conserved exported protein of unknown function compare
PP_1623 +1.1 8.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_5253 +1.1 3.6 Arylesterase compare
PP_1198 +1.1 3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5453 +1.1 2.2 conserved protein of unknown function compare
PP_4993 +1.1 5.2 Glutathione synthetase compare
PP_0785 +1.1 6.5 putative cysZ protein, required for sulfate transport compare
PP_5053 +1.1 6.9 Protein-export protein SecB compare
PP_5058 +1.0 6.3 Carboxy-terminal-processing protease compare
PP_0119 +1.0 2.6 putative zinc uptake regulation protein ZUR compare
PP_2403 +1.0 2.1 Chemotaxis protein CheY compare
PP_4848 +1.0 2.7 Curved DNA-binding protein compare
PP_4874 +1.0 1.7 50S ribosomal protein L9 compare
PP_4173 +0.9 4.5 Sensor histidine kinase/response regulator compare
PP_0957 +0.9 2.7 D-arabinose 5-phosphate isomerase compare
PP_1058 +0.9 8.3 conserved protein of unknown function compare
PP_0405 +0.9 8.4 conserved protein of unknown function compare
PP_1562 +0.9 2.2 putative Phage terminase, small subunit compare
PP_2145 +0.9 5.4 beta-N-acetylglucosaminidase compare
PP_5633 +0.9 3.1 conserved protein of unknown function compare
PP_0593 +0.8 1.3 putative ribosome-binding factor compare
PP_2402 +0.8 2.2 putative Sensor histidine kinase compare
PP_1313 +0.8 6.8 Transcriptional regulator, AraC family compare
PP_4484 +0.8 6.7 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_4317 +0.8 3.2 conserved protein of unknown function compare
PP_4785 +0.8 4.3 conserved exported protein of unknown function compare
PP_4808 +0.8 2.7 23S rRNA m3psi1915 methyltransferase compare
PP_2389 +0.8 5.2 conserved protein of unknown function compare
PP_5361 +0.8 6.2 47 kDa protein compare
PP_2138 +0.8 1.7 conserved protein of unknown function compare
PP_3662 +0.7 4.9 conserved protein of unknown function compare
PP_3778 +0.7 5.3 Pyrroline-5-carboxylate reductase compare
PP_2098 +0.7 6.0 D-alanyl-D-alanine carboxypeptidase compare
PP_1713 +0.7 2.4 Transcriptional regulator PcaQ compare
PP_5674 +0.7 2.1 conserved protein of unknown function compare
PP_4989 +0.7 2.7 Protein PilJ compare
PP_0129 +0.7 5.4 GGDEF domain protein compare
PP_4485 +0.7 5.5 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_2390 +0.7 4.3 Transcriptional regulator, LysR family compare
PP_5027 +0.7 1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0274 +0.7 1.6 putative transcriptional regulator containing HTH domain compare
PP_0855 +0.7 1.9 conserved protein of unknown function compare
PP_3691 +0.7 6.4 DNA helicase-related protein compare
PP_2130 +0.7 4.7 putative Soluble lytic transglycosylase compare
PP_4214 +0.6 2.5 pyoverdine biosynthesis related protein compare
PP_1779 +0.6 3.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1141 +0.6 4.7 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1137 +0.6 4.6 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_2747 +0.6 1.5 conserved protein of unknown function compare
PP_4204 +0.6 3.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4009 +0.6 2.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_0959 +0.6 2.2 phospholipid ABC transporter compare
PP_0395 +0.6 5.1 putative type IV piliation protein compare
PP_1355 +0.6 5.9 Muropeptide permease AmpG compare
PP_4532 +0.6 1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1776 +0.6 5.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4249 +0.6 2.6 conserved protein of unknown function compare
PP_1554 +0.6 2.5 conserved protein of unknown function compare
PP_2148 +0.6 4.8 transcription-repair coupling factor compare
PP_5701 +0.6 1.8 conserved protein of unknown function compare
PP_4100 +0.6 2.6 Transcriptional regulator, Cro/CI family compare
PP_2217 +0.6 3.1 enoyl-CoA hydratase compare
PP_1140 +0.6 4.5 branched chain amino acid transporter - permease subunit compare
PP_4050 +0.6 5.3 glycogen synthase compare
PP_3899 +0.6 2.1 conserved protein of unknown function, hicB family compare
PP_2101 +0.6 3.0 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_1548 +0.6 2.3 conserved protein of unknown function compare
PP_3401 +0.6 2.0 conserved protein of unknown function compare
PP_3779 +0.6 3.6 Transcriptional regulator, LysR family compare
PP_3000 +0.6 2.9 MaoC domain protein compare
PP_1268 +0.6 1.9 putative HtrA suppressor protein sohA compare
PP_0396 +0.6 4.7 conserved protein of unknown function compare
PP_2889 +0.6 2.3 putative Transmembrane regulator PrtR compare
PP_5017 +0.6 1.0 Sec-independent protein translocase protein TatB compare
PP_2764 +0.6 1.5 FMN reductase (NADPH) compare
PP_0135 +0.6 1.3 conserved exported protein of unknown function compare
PP_4486 +0.5 3.7 lysine / arginine / ornithine ABC transporter - periplasmic binding protein compare
PP_4143 +0.5 2.2 conserved protein of unknown function compare
PP_4797 +0.5 2.2 conserved protein of unknown function compare
PP_2215 +0.5 2.1 acetyl-CoA acetyltransferase compare
PP_1544 +0.5 2.7 conserved protein of unknown function compare
PP_2581 +0.5 1.3 conserved protein of unknown function compare
PP_4551 +0.5 3.4 Hydrolase, alpha/beta fold family compare
PP_5469 +0.5 2.3 putative SAM-dependent methyltransferase compare
PP_2437 +0.5 4.0 putative Acyl-CoA dehydrogenase compare
PP_4054 +0.5 1.6 conserved protein of unknown function compare
PP_2695 +0.5 1.6 Transcriptional regulator, LysR family compare
PP_3892 +0.5 1.1 conserved protein of unknown function compare
PP_0181 +0.5 2.3 conserved protein of unknown function compare
PP_1583 +0.5 2.5 putative Structural protein P5 compare
PP_1987 +0.5 1.8 Methlytransferase, UbiE/COQ5 family compare
PP_1824 +0.5 1.5 Smr domain protein compare
PP_4483 +0.5 3.1 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_0566 +0.5 1.1 translation-related factor compare
PP_1112 +0.5 2.9 conserved membrane protein of unknown function compare
PP_1293 +0.5 1.2 molybdopterin synthase small subunit compare
PP_2846 +0.5 1.5 urease accessory protein compare
PP_1176 +0.5 1.4 conserved protein of unknown function compare
PP_4213 +0.5 1.3 putative dipeptidase compare
PP_2816 +0.5 2.2 putative Transcriptional regulator NfxB compare
PP_3766 +0.5 1.8 Lactoylglutathione lyase compare
PP_1008 +0.5 1.6 RNA polymerase subunit sigma-24 compare
PP_4693 +0.5 2.1 RNA polymerase-binding transcription factor DksA compare
PP_0122 +0.5 1.1 conserved exported protein of unknown function compare
PP_2510 +0.5 1.0 conserved protein of unknown function compare
PP_0757 +0.5 3.4 conserved protein of unknown function compare
PP_1307 +0.5 1.9 AsnC family transcriptional regulator compare
PP_1999 +0.5 0.9 membrane protein required for colicin V production compare
PP_0163 +0.5 3.8 putative transcriptional regulator compare
PP_1908 +0.5 4.0 putative Peptidase compare
PP_4943 +0.5 1.2 putative Glycosyl transferase compare
PP_0508 +0.5 2.0 conserved exported protein of unknown function compare
PP_0001 +0.5 0.9 probable chromosome-partitioning protein compare
PP_3392 +0.5 1.3 conserved protein of unknown function compare
PP_1993 +0.5 3.5 putative motility protein fimV compare
PP_4159 +0.5 2.0 Potassium-transporting ATPase C chain compare
PP_1291 +0.5 3.7 PhoH family protein compare
PP_0262 +0.5 1.5 conserved protein of unknown function compare
PP_1444 +0.5 4.0 quinoprotein glucose dehydrogenase compare
PP_3098 +0.5 0.9 conserved protein of unknown function compare
PP_3020 +0.5 1.7 putative Serine/threonine protein phosphatase compare
PP_2302 +0.5 2.1 DNA-binding, ATP-dependent protease compare
PP_0139 +0.5 1.5 putative Lipoprotein compare
PP_0596 +0.5 3.8 Omega-amino acid--pyruvate aminotransferase compare
PP_0575 +0.5 2.7 conserved membrane protein of unknown function compare
PP_0397 +0.5 4.1 protein kinase compare
PP_2260 +0.5 2.2 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_0151 +0.5 1.9 conserved exported protein of unknown function compare
PP_2840 +0.5 2.3 putative Membrane protein compare
PP_2876 +0.5 3.5 Beta-lactamase compare
PP_1234 +0.5 3.7 putative permease compare
PP_5238 +0.5 2.5 conserved protein of unknown function compare
PP_4652 +0.5 2.2 putative Membrane protein compare
PP_1719 +0.5 3.4 Tail-specific protease prc compare
PP_4694 +0.5 3.2 Glutamyl-Q tRNA(Asp) synthetase compare
PP_5365 +0.5 3.6 putative fatty acid methyltransferase compare
PP_3627 +0.5 3.1 conserved protein of unknown function compare
PP_0434 +0.5 3.5 Anhydro-N-acetylmuramic acid kinase compare
PP_1862 +0.5 2.2 conserved membrane protein of unknown function compare
PP_3473 +0.4 2.0 curli secretion and assembly outer membrane associated component compare
PP_2304 +0.4 2.7 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5609 +0.4 1.2 conserved protein of unknown function compare
PP_4515 +0.4 2.5 Transcriptional regulator, MarR family compare
PP_3035 +0.4 1.4 conserved protein of unknown function compare
PP_2547 +0.4 1.9 Transcriptional regulator, LysR family compare
PP_1573 +0.4 2.9 putative Major tail protein compare
PP_0261 +0.4 2.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3055 +0.4 2.0 Pyocin R2_PP, tail formation protein compare
PP_5491 +0.4 1.4 conserved protein of unknown function with SEC-C motif domain compare
PP_5288 +0.4 3.1 Phosphomannomutase/phosphoglucomutase compare
PP_4604 +0.4 2.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2705 +0.4 2.1 conserved protein of unknown function compare
PP_2720 +0.4 0.7 conserved protein of unknown function compare
PP_0938 +0.4 2.9 conserved protein of unknown function compare
PP_1139 +0.4 3.6 branched chain amino acid transporter - permease subunit compare
PP_5507 +0.4 2.5 protein of unknown function compare
PP_2864 +0.4 1.7 conserved protein of unknown function compare
PP_3471 +0.4 2.4 conserved protein of unknown function compare
PP_1055 +0.4 1.0 Type II secretion pathway protein GspN compare
PP_2668 +0.4 1.1 ABC efflux transporter, ATP-binding protein compare
PP_2231 +0.4 1.1 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3614 +0.4 1.8 conserved membrane protein of unknown function compare
PP_0167 +0.4 3.6 Toxin secretion ATP-binding protein compare
PP_5187 +0.4 2.2 putative thiamine triphosphatase compare
PP_5041 +0.4 3.4 glycogen phosphorylase compare
PP_3365 +0.4 1.0 Acetolactate synthase compare
PP_4905 +0.4 2.2 Flagellar motor rotation protein compare
PP_4642 +0.4 0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_1451 +0.4 2.2 conserved exported protein of unknown function compare
PP_0260 +0.4 2.5 ADP-sugar pyrophosphorylase compare
PP_1981 +0.4 2.0 tRNA-dihydrouridine synthase C compare
PP_0627 +0.4 1.1 conserved protein of unknown function compare
PP_2568 +0.4 0.8 Ring-cleaving dioxygenase compare
PP_3964 +0.4 2.5 transposase compare
PP_4701 +0.4 0.7 glucose-6-phosphate isomerase compare
PP_0257 +0.4 1.8 protein sulfur transferase compare
PP_2203 +0.4 0.8 conserved protein of unknown function compare
PP_4166 +0.4 1.8 conserved protein of unknown function compare
PP_1699 +0.4 1.5 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_2000 +0.4 0.7 amidophosphoribosyl transferase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Glutamine in Pseudomonas putida KT2440

For carbon source L-Glutamine across organisms