Experiment set10IT009 for Agrobacterium fabrum C58

Compare to:

trans-aconitic acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1845 -7.6 -5.2 phosphoribosylformylglycinamidine synthase I compare
Atu0679 -6.5 -6.3 ATP phosphoribosyltransferase compare
Atu1750 -6.4 -7.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu1687 -6.4 -9.7 anthranilate phosphoribosyltransferase compare
Atu0432 -6.3 -9.7 O-succinylhomoserine sulfhydrylase compare
Atu2289 -6.1 -16.7 anthranilate synthase component I and II compare
Atu3707 -5.9 -4.1 phosphoserine aminotransferase compare
Atu0678 -5.8 -5.6 histidyl-tRNA synthetase compare
Atu3754 -5.8 -7.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0035 -5.8 -12.3 phosphoenolpyruvate carboxykinase compare
Atu2036 -5.7 -14.8 acetolactate synthase III, large subunit compare
Atu1205 -5.7 -14.7 threonine dehydratase compare
Atu0099 -5.7 -13.2 prephenate dehydratase compare
Atu2709 -5.6 -18.4 3-isopropylmalate dehydratase, large subunit compare
Atu0038 -5.6 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0017 -5.6 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -5.6 -6.6 indole-3-glycerol-phosphate synthase compare
Atu2264 -5.5 -13.3 2-isopropylmalate synthase compare
Atu1850 -5.5 -6.5 phosphoribosylformylglycinamidine synthetase II compare
Atu1620 -5.5 -12.3 triosephosphate isomerase compare
Atu3740 -5.5 -10.5 fructose bisphosphate aldolase compare
Atu1307 -5.5 -7.7 dihydroorotase compare
Atu2040 -5.3 -6.3 phosphoserine phosphatase compare
Atu0537 -5.2 -7.2 histidinol dehydrogenase compare
Atu3739 -5.2 -3.2 phosphoglycerate kinase compare
Atu2718 -5.2 -9.3 homoserine O-succinyltransferase compare
Atu1141 -5.1 -8.3 Phosphoribosylglycinamide synthetase compare
Atu0298 -5.1 -9.7 orotidine 5 compare
Atu3706 -4.9 -9.5 D-3-phosphoglycerate dehydrogenase compare
Atu0486 -4.9 -6.7 dihydroorotate dehydrogenase compare
Atu2791 -4.9 -9.9 3-isopropylmalate dehydrogenase compare
Atu3885 -4.8 -9.8 inositol monophosphatase compare
Atu3755 -4.8 -6.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2790 -4.7 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu1685 -4.7 -2.1 hypothetical protein compare
Atu4505 -4.7 -10.9 LacI family transcriptional regulator compare
Atu1686 -4.7 -17.7 peptidyl-prolyl cis-trans isomerse D compare
Atu1075 -4.6 -8.7 amidophosphoribosyltransferase compare
Atu1588 -4.6 -10.1 homoserine dehydrogenase compare
Atu0039 -4.5 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -4.5 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu3469 -4.5 -3.1 phosphoglyceromutase compare
Atu2115 -4.5 -13.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1844 -4.4 -3.5 Phosphoribosylformylglycinamidine synthetase compare
Atu0647 -4.4 -8.8 phosphoribosylamine--glycine ligase compare
Atu2747 -4.3 -11.4 hypothetical protein compare
Atu0400 -4.3 -5.3 orotate phosphoribosyltransferase compare
Atu1308 -4.3 -7.9 aspartate carbamoyl transferase catalytic subunit compare
Atu0399 -4.2 -9.3 dihydroorotase compare
Atu3482 -4.2 -11.6 pantoate--beta-alanine ligase compare
Atu1140 -3.9 -4.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2650 -3.8 -15.2 glycerol-3-phosphate dehydrogenase compare
Atu2015 -3.8 -15.7 aminotransferase compare
Atu0031 -3.6 -2.3 PTS system, IIA component compare
Atu0041 -3.4 -3.1 glutamine amidotransferase compare
Atu3783 -3.2 -15.9 glutamate synthase subunit beta compare
Atu2685 -3.1 -12.9 aconitate hydratase compare
Atu0040 -3.1 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1030 -3.0 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4098 -2.9 -11.5 quinolinate synthetase compare
Atu1589 -2.9 -7.5 aminotransferase, class I compare
Atu2548 -2.8 -15.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1748 -2.8 -11.1 NIFU-like protein compare
Atu4096 -2.8 -9.3 nicotinate-nucleotide pyrophosphorylase compare
Atu4097 -2.8 -11.6 L-aspartate oxidase compare
Atu3784 -2.7 -20.5 glutamate synthase large subunit compare
Atu0029 -2.7 -6.0 S-adenosylhomocysteine hydrolase compare
Atu0641 -2.6 -5.8 hypothetical protein compare
Atu4261 -2.5 -13.0 ABC transporter permease compare
Atu1446 -2.5 -4.3 two component response regulator compare
Atu3483 -2.4 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2155 -2.4 -15.1 methionine synthase compare
Atu0421 -2.3 -2.5 ABC transporter, membrane spanning protein compare
Atu1456 -2.3 -10.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0876 -2.3 -3.6 superoxide dismutase compare
Atu4260 -2.2 -12.0 ABC transporter permease compare
Atu4262 -2.2 -9.2 ABC transporter substrate binding protein compare
Atu4263 -2.2 -10.9 hypothetical protein conserved
Atu4264 -2.0 -10.1 LysR family transcriptional regulator conserved
Atu0723 -2.0 -2.3 FAD dependent oxidoreductase compare
Atu8115 -2.0 -4.6 Hypothetical Protein compare
Atu1454 -1.8 -6.1 siroheme synthase compare
Atu4072 -1.6 -0.9 nodulation protein N compare
Atu3731 -1.6 -6.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu3290 -1.5 -8.1 phosphomethylpyrimidine kinase compare
Atu0422 -1.4 -1.9 ABC transporter, membrane spanning protein compare
Atu3288 -1.4 -5.8 hydroxyethylthiazole kinase compare
Atu3763 -1.3 -1.7 hypothetical protein compare
Atu0346 -1.3 -4.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2569 -1.3 -7.9 thiamine biosynthesis protein compare
Atu2207 -1.3 -2.2 two component sensor kinase compare
Atu1464 -1.3 -5.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1462 -1.2 -7.6 glycine cleavage system protein P2 compare
Atu1455 -1.2 -3.6 hypothetical protein compare
Atu4217 -1.2 -1.4 TetR family transcriptional regulator compare
Atu2554 -1.2 -1.8 lysyl-tRNA synthetase compare
Atu3009 -1.2 -1.0 exopolysaccharide production protein compare
Atu6098 -1.2 -1.2 transcriptional regulator, HTH family compare
Atu3997 -1.1 -8.3 biotin synthetase compare
Atu3289 -1.1 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu0331 -1.1 -1.6 sigma-54 modulation protein compare
Atu1445 -1.1 -4.1 two component sensor kinase compare
Atu0189 -1.1 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2640 -1.1 -3.3 hypothetical protein compare
Atu5142 -1.0 -1.6 hypothetical protein compare
Atu0434 -1.0 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2376 -1.0 -0.9 hypothetical protein compare
Atu1028 -1.0 -2.6 hypothetical protein compare
Atu1062 -1.0 -1.8 phosphatidylserine synthase compare
Atu3121 -1.0 -1.3 cold shock protein compare
Atu1457 -1.0 -1.8 hypothetical protein compare
Atu0050 -1.0 -3.2 two component response regulator compare
Atu3486 -1.0 -1.6 DeoR family transcriptional regulator compare
Atu3496 -1.0 -2.3 hypothetical protein compare
Atu1447 -1.0 -2.0 two component sensor kinase compare
Atu2020 -1.0 -1.6 transcriptional regulator, TetR family compare
Atu2249 -0.9 -1.3 hypothetical protein compare
Atu4686 -0.8 -2.2 hypothetical protein compare
Atu2633 -0.8 -2.4 RhtB family transporter compare
Atu0977 -0.8 -3.5 serine protease DO-like protease compare
Atu1810 -0.8 -0.9 hypothetical protein compare
Atu4711 -0.8 -3.7 two component sensor kinase compare
Atu1904 -0.8 -2.4 transcriptional regulator compare
Atu0677 -0.8 -1.3 hypothetical protein compare
Atu1701 -0.8 -2.0 protein-L-isoaspartate O-methyltransferase compare
Atu4541 -0.8 -2.5 carboxymuconolactone decarboxylase compare
Atu0544 -0.8 -2.1 hypothetical protein compare
Atu1463 -0.8 -3.5 glycine cleavage system component H compare
Atu0036 -0.8 -2.1 hypothetical protein compare
Atu8138 -0.8 -1.4 hypothetical protein compare
Atu2209 -0.8 -3.1 pyrroline-5-carboxylate reductase compare
Atu2684 -0.8 -2.0 hypothetical protein compare
Atu1644 -0.8 -2.1 hypothetical protein compare
Atu0777 -0.8 -0.9 hypothetical protein compare
Atu4317 -0.8 -1.5 TetR family transcriptional regulator compare
Atu2728 -0.8 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu2439 -0.7 -1.1 hypothetical protein compare
Atu2798 -0.7 -2.9 precorrin-6y methyltransferase compare
Atu4618 -0.7 -4.4 dTDP-rhamnose-3,5-epimerase compare
Atu8168 -0.7 -2.4 hypothetical protein compare
Atu4613 -0.7 -5.5 glycosyltransferase compare
Atu2379 -0.7 -4.7 phosphomannomutase compare
Atu4615 -0.7 -4.8 glucose-1-phosphate thymidylyltransferase compare
Atu0188 -0.7 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2832 -0.7 -2.0 tRNA modification GTPase compare
Atu2406 -0.7 -2.0 hypothetical protein compare
Atu8082 -0.7 -1.7 hypothetical protein compare
Atu1372 -0.7 -3.2 hypothetical protein compare
Atu3015 -0.7 -3.4 hypothetical protein compare
Atu0201 -0.7 -1.2 hypothetical protein compare
Atu2617 -0.6 -2.1 chemotaxis protein compare
Atu4161 -0.6 -1.1 hypothetical protein compare
Atu0300 -0.6 -3.1 methyltransferase compare
Atu8088 -0.6 -1.3 hypothetical protein compare
Atu3518 -0.6 -4.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu4477 -0.6 -3.4 TetR family transcriptional regulator compare
Atu5451 -0.6 -1.0 hypothetical protein compare
Atu5501 -0.6 -2.1 hypothetical protein compare
Atu0837 -0.6 -3.2 transcriptional regulator, MarR family compare
Atu1364 -0.6 -2.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1254 -0.6 -0.9 transcriptional regulator, ArsR family compare
Atu2067 -0.6 -0.7 hypothetical protein compare
Atu1163 -0.6 -0.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4614 -0.6 -3.8 glycosyltransferase compare
Atu3429 -0.6 -1.0 hypothetical protein compare
Atu8018 -0.6 -0.7 hypothetical protein compare
Atu8023 -0.6 -1.5 hypothetical protein compare
Atu2808 -0.6 -2.7 cobyric acid synthase compare
Atu3017 -0.6 -0.9 phosphoglyceromutase compare
Atu3287 -0.6 -2.2 thiamine biosynthesis associated protein compare
Atu2026 -0.6 -2.6 exodeoxyribonuclease V compare
Atu4773 -0.5 -1.0 two component response regulator compare
Atu4425 -0.5 -2.3 inosine-uridine preferring nucleoside hydrolase compare
Atu0923 -0.5 -2.6 hypothetical protein compare
Atu3353 -0.5 -3.7 mannose-1-phosphate guanylyltransferase compare
Atu0272 -0.5 -1.7 transcriptional regulator, MarR family compare
Atu5540 -0.5 -0.7 hypothetical protein compare
Atu1646 -0.5 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0861 -0.5 -1.5 hypothetical protein compare
Atu0344 -0.5 -2.0 hypothetical protein compare
Atu3013 -0.5 -1.7 hypothetical protein compare
Atu0769 -0.5 -0.7 protoheme IX farnesyltransferase compare
Atu4616 -0.5 -0.9 dTDP-4-dehydrorhamnose reductase compare
Atu3295 -0.5 -2.2 hypothetical protein compare
Atu6165 -0.5 -0.7 hypothetical protein compare
Atu4166 -0.5 -1.4 UDP-glucose 4-epimerase compare
Atu3608 -0.5 -1.9 hypothetical protein compare
Atu2270 -0.5 -1.0 ATP-dependent Clp protease, proteolytic subunit compare
Atu1678 -0.5 -2.3 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu1469 -0.5 -1.2 hypothetical protein compare
Atu3699 -0.5 -2.7 hypothetical protein compare
Atu2827 -0.5 -1.3 hypothetical protein compare
Atu3472 -0.5 -2.3 2-oxoisovalerate dehydrogenase subunit beta compare
Atu1774 -0.5 -2.3 ABC transporter, substrate binding protein (peptide) compare
Atu1525 -0.5 -2.1 hypothetical protein compare
Atu0025 -0.5 -1.0 hypothetical protein compare
Atu4876 -0.5 -3.1 oxidoreductase compare
Atu2200 -0.5 -0.7 cold shock protein compare
Atu4514 -0.5 -2.2 RpiR family transcriptional regulator compare
Atu2428 -0.5 -2.9 exopolysaccharide production protein PssB compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source trans-aconitic acid in Agrobacterium fabrum C58

For carbon source trans-aconitic acid across organisms