Experiment set10IT008 for Pseudomonas putida KT2440

Compare to:

L-Glutamic acid monopotassium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0292 -5.0 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -4.8 -6.5 Ornithine carbamoyltransferase compare
PP_1070 -4.6 -6.4 glutamate / aspartate ABC transporter - permease subunit conserved
PP_3511 -4.6 -8.8 Branched-chain-amino-acid aminotransferase compare
PP_1069 -4.4 -7.4 glutamate / aspartate ABC transporter - permease subunit conserved
PP_1067 -4.4 -13.3 Sensor histidine kinase conserved
PP_1071 -4.2 -6.9 glutamate / aspartate ABC transporter - periplasmic binding protein conserved
PP_1066 -4.2 -5.7 C4-dicarboxylate transport transcriptional regulatory protein conserved
PP_0967 -4.2 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5128 -4.1 -10.5 Dihydroxy-acid dehydratase compare
PP_0966 -4.1 -10.8 Histidinol dehydrogenase compare
PP_4909 -4.0 -6.7 phosphoserine phosphatase compare
PP_0082 -3.9 -6.0 tryptophan synthase alpha chain compare
PP_0137 -3.9 -11.6 glutamate/aspartate-proton DAACS transporter conserved
PP_4680 -3.9 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -3.8 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -3.8 -13.6 Ketol-acid reductoisomerase compare
PP_4890 -3.7 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1632 -3.7 -2.3 conserved protein of unknown function compare
PP_4724 -3.7 -7.0 Carbamoyl-phosphate synthase small chain compare
PP_5014 -3.5 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_5337 -3.5 -4.1 LysR family transcriptional regulator compare
PP_0293 -3.4 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0291 -3.4 -4.1 conserved protein of unknown function compare
PP_1068 -3.4 -4.3 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2371 -3.4 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4723 -3.2 -11.1 Carbamoyl-phosphate synthase large chain compare
PP_0421 -3.2 -8.8 Anthranilate phosphoribosyltransferase compare
PP_5098 -3.1 -8.1 methionine biosynthesis protein MetW compare
PP_0290 -3.1 -6.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1231 -3.1 -5.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0417 -3.1 -14.9 Anthranilate synthase component 1 compare
PP_1088 -3.1 -8.0 Argininosuccinate synthase compare
PP_4696 -3.0 -3.6 Nitrogen regulation protein NR(I) compare
PP_0691 -3.0 -2.9 Glutamate 5-kinase compare
PP_3999 -3.0 -6.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0965 -3.0 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -3.0 -6.3 tryptophan synthase beta chain compare
PP_1110 -3.0 -2.9 serine acetyltransferase compare
PP_5097 -2.9 -12.6 homoserine O-acetyltransferase compare
PP_1995 -2.9 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1109 -2.8 -13.0 Transcriptional regulator, GntR family compare
PP_5095 -2.8 -1.9 pyrroline-5-carboxylate reductase compare
PP_4891 -2.8 -4.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4695 -2.8 -11.5 Sensory box histidine kinase compare
PP_2001 -2.7 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_0289 -2.6 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4679 -2.6 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3946 -2.6 -2.3 HTH-type transcriptional repressor NicR compare
PP_4122 -2.5 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0184 -2.5 -5.3 Argininosuccinate lyase compare
PP_0594 -2.4 -8.6 Transcriptional regulator, TetR family conserved
PP_0164 -2.4 -9.5 conserved protein of unknown function compare
PP_1988 -2.4 -6.8 3-isopropylmalate dehydrogenase compare
PP_1986 -2.4 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_0185 -2.4 -9.4 Positive alginate biosynthesis regulatory protein compare
PP_5015 -2.3 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0420 -2.3 -6.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4997 -2.2 -2.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4892 -2.2 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5289 -2.2 -3.6 Acetylglutamate kinase compare
PP_0735 -2.1 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_0852 -2.1 -3.5 Transcriptional regulator, Cro/CI family compare
PP_1664 -2.1 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_2370 -2.1 -2.4 conserved protein of unknown function compare
PP_4739 -2.1 -2.9 conserved protein of unknown function compare
PP_0846 -2.1 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_1025 -2.0 -10.5 2-isopropylmalate synthase compare
PP_4942 -2.0 -2.7 conserved protein of unknown function compare
PP_0422 -2.0 -4.4 Indole-3-glycerol phosphate synthase compare
PP_1233 -2.0 -4.2 sulfurtransferase compare
PP_1111 -1.9 -5.5 putative Synthetase compare
PP_4937 -1.9 -4.7 toluene tolerance protein compare
PP_3924 -1.9 -2.5 conserved protein of unknown function compare
PP_5274 -1.9 -1.5 conserved protein of unknown function compare
PP_5303 -1.9 -3.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0787 -1.9 -2.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4917 -1.9 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5441 -1.8 -2.9 protein of unknown function compare
PP_5338 -1.8 -1.2 aspartate ammonia-lyase compare
PP_3105 -1.8 -2.7 conserved membrane protein of unknown function compare
PP_4289 -1.8 -7.3 conserved membrane protein of unknown function compare
PP_4124 -1.8 -3.5 NADH-quinone oxidoreductase subunit G compare
PP_5327 -1.8 -5.7 putative phosphate ABC transporter, permease subunit compare
PP_0949 -1.7 -5.4 putative ATP-binding protein UPF0042 compare
PP_0627 -1.7 -2.8 conserved protein of unknown function compare
PP_5328 -1.7 -3.6 putative phosphate transport system permease protein compare
PP_2575 -1.7 -2.3 conserved exported protein of unknown function compare
PP_4722 -1.7 -3.5 Transcription elongation factor GreA compare
PP_2327 -1.7 -4.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0058 -1.6 -12.9 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_2328 -1.6 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_5329 -1.6 -4.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5104 -1.5 -6.0 thiazole synthase compare
PP_4130 -1.5 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5155 -1.5 -2.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4799 -1.5 -2.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5SB -1.5 -3.9 5S ribosomal RNA compare
PP_4120 -1.5 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_1468 -1.5 -1.9 Tyrosine recombinase XerD compare
PP_4943 -1.5 -1.4 putative Glycosyl transferase compare
PP_1912 -1.5 -4.0 Phosphate acyltransferase compare
PP_4131 -1.5 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_0872 -1.5 -5.1 Peptide chain release factor 3 compare
PP_2880 -1.4 -2.3 Transcriptional regulator, TetR family compare
PP_4782 -1.4 -3.5 Phosphomethylpyrimidine kinase compare
PP_4922 -1.4 -7.8 Phosphomethylpyrimidine synthase compare
PP_3903 -1.4 -2.1 conserved protein of unknown function compare
PP_5008 -1.4 -1.2 Poly granule-associated protein compare
PP_4832 -1.4 -3.1 Precorrin-6x reductase compare
PP_0435 -1.3 -9.3 Peptidase, M23/M37 family compare
PP_4697 -1.3 -2.7 poly(A) polymerase compare
PP_t11 -1.3 -2.6 tRNA-Lys compare
PP_0937 -1.3 -4.9 endoribonuclease G (RNAse G) compare
PP_5241 -1.3 -2.2 DNA-binding response regulator, LuxR family compare
PP_4910 -1.3 -1.2 conserved protein of unknown function compare
PP_5217 -1.3 -8.8 Polyphosphate kinase compare
PP_3505 -1.3 -2.2 conserved protein of unknown function compare
PP_3649 -1.3 -2.7 Transcriptional regulator, GntR family compare
PP_1678 -1.3 -2.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4129 -1.3 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5580 -1.2 -2.3 protein of unknown function compare
PP_0834 -1.2 -1.0 Sec translocation complex subunit YajC compare
PP_4342 -1.2 -1.6 flagellar synthesis regulator, putative ATPase compare
PP_1994 -1.2 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_0963 -1.2 -1.4 putative BolA family protein compare
PP_4271 -1.2 -1.0 conserved protein of unknown function compare
PP_3926 -1.2 -1.9 short-chain dehydrogenase compare
PP_4121 -1.2 -2.2 NADH-quinone oxidoreductase subunit C/D compare
PP_2060 -1.2 -1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1654 -1.1 -1.9 cysteine synthase B compare
PP_5035 -1.1 -4.9 Histidine utilization repressor compare
PP_0153 -1.1 -1.1 hypothetical protein compare
PP_4370 -1.1 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_3637 -1.1 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4561 -1.1 -0.8 stress response protein compare
PP_1036 -1.1 -3.6 membrane-bound lytic murein transglycosylase F compare
PP_5393 -1.1 -1.7 putative metal-binding chaperone compare
PP_4941 -1.1 -4.3 conserved exported protein of unknown function compare
PP_4379 -1.1 -4.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4701 -1.1 -0.9 glucose-6-phosphate isomerase compare
PP_2800 -1.1 -3.4 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_3790 -1.1 -5.1 diaminopimelate epimerase compare
PP_1112 -1.1 -5.3 conserved membrane protein of unknown function compare
PP_0339 -1.1 -1.5 Pyruvate dehydrogenase E1 component compare
PP_4009 -1.1 -2.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_5350 -1.1 -2.0 Transcriptional regulator, RpiR family compare
PP_4482 -1.0 -2.8 Transcriptional regulator, AraC family compare
PP_1309 -1.0 -4.1 conserved exported protein of unknown function compare
PP_4811 -1.0 -2.2 Gamma-glutamyl phosphate reductase compare
PP_1598 -1.0 -3.2 regulatory intramembrane protein RIP zinc protease compare
PP_0855 -1.0 -1.9 conserved protein of unknown function compare
PP_3052 -1.0 -1.2 conserved protein of unknown function compare
PP_1303 -1.0 -3.8 Sulfate adenylyltransferase subunit 2 compare
PP_1985 -1.0 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_0362 -1.0 -5.8 Biotin synthase compare
PP_0984 -1.0 -2.4 conserved membrane protein of unknown function compare
PP_2336 -1.0 -1.9 aconitate hydratase 1 compare
PP_1297 -1.0 -4.3 putative amino-acid ABC transporter-binding protein YhdW compare
PP_5701 -1.0 -1.6 conserved protein of unknown function compare
PP_0801 -1.0 -1.3 conserved exported protein of unknown function compare
PP_3245 -1.0 -1.2 conserved protein of unknown function compare
PP_4126 -1.0 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_3286 -1.0 -3.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4944 -1.0 -2.9 Carbamoyltransferase compare
PP_2070 -1.0 -1.1 Transcriptional regulator, AraC family compare
PP_3241 -1.0 -1.2 conserved exported protein of unknown function compare
PP_1808 -1.0 -2.1 glucose-6-phosphate isomerase compare
PP_4846 -1.0 -2.4 L-amino acid N-acyltransferase compare
PP_4364 -1.0 -2.2 putative Anti-sigma F factor antagonist compare
PP_4700 -1.0 -1.3 pantothenate synthetase compare
PP_2680 -0.9 -3.2 aldehyde dehydrogenase compare
PP_4859 -0.9 -3.3 Transcriptional regulator, TetR family compare
PP_3603 -0.9 -2.9 Transcriptional regulator, GntR family compare
PP_1348 -0.9 -3.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2908 -0.9 -2.9 DNA-binding transcriptional repressor compare
PP_5508 -0.9 -1.0 conserved protein of unknown function compare
PP_2718 -0.9 -0.9 arsenic resistance transcriptional regulator compare
PP_1319 -0.9 -3.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4261 -0.9 -2.5 cation-transporting P-type ATPase compare
PP_3731 -0.9 -4.4 Transcriptional regulator, TetR family compare
PP_1493 -0.9 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0770 -0.9 -3.0 PemI-like protein compare
PP_5093 -0.9 -1.2 twitching motility protein compare
PP_1734 -0.9 -1.1 Probable septum site-determining protein MinC compare
PP_4396 -0.9 -2.1 conserved protein of unknown function compare
PP_5168 -0.9 -1.6 sulfate/thiosulfate import ATP-binding protein compare
PP_2999 -0.9 -1.2 Glyoxalase family protein compare
PP_4940 -0.9 -3.5 Putative glycosyltransferase compare
PP_0313 -0.9 -2.0 putative electron transfer flavoprotein beta subunit compare
PP_2950 -0.9 -3.1 conserved protein of unknown function compare
PP_2794 -0.9 -1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1099 -0.9 -1.9 Cold shock protein CapB compare
PP_1679 -0.9 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0914 -0.9 -4.6 GGDEF domain protein compare
PP_1609 -0.9 -1.6 conserved protein of unknown function compare
PP_5604 -0.8 -1.3 putative subtilisin-like serine protease compare
PP_3765 -0.8 -2.7 H-NS family protein MvaT compare
PP_5569 -0.8 -2.3 protein of unknown function of phage origin compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas putida KT2440

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms