Experiment set10IT006 for Pseudomonas putida KT2440

Compare to:

L-Arginine carbon source

200 most important genes:

  gene name fitness t score description  
PP_1986 -6.8 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_1231 -6.3 -7.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4477 -5.6 -8.6 N-succinylarginine dihydrolase compare
PP_0082 -5.5 -7.5 tryptophan synthase alpha chain compare
PP_2371 -5.4 -9.0 Sulphite reductase hemoprotein, beta subunit compare
PP_4723 -5.2 -17.9 Carbamoyl-phosphate synthase large chain compare
PP_3511 -5.2 -11.2 Branched-chain-amino-acid aminotransferase compare
PP_4999 -5.1 -3.5 dihydroorotase-like protein compare
PP_4678 -5.1 -18.0 Ketol-acid reductoisomerase compare
PP_0083 -5.1 -7.8 tryptophan synthase beta chain compare
PP_0735 -5.1 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_1988 -5.0 -10.1 3-isopropylmalate dehydrogenase compare
PP_4909 -4.9 -10.9 phosphoserine phosphatase compare
PP_4680 -4.7 -17.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -4.7 -5.6 Nitrogen regulation protein NR(I) compare
PP_3999 -4.7 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1985 -4.5 -7.9 3-isopropylmalate dehydratase large subunit compare
PP_5098 -4.4 -9.1 methionine biosynthesis protein MetW compare
PP_0787 -4.4 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0290 -4.4 -10.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -4.4 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5104 -4.3 -10.8 thiazole synthase compare
PP_4481 -4.3 -10.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1995 -4.2 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4478 -4.2 -9.9 N-succinylglutamate 5-semialdehyde dehydrogenase conserved
PP_0422 -4.2 -7.3 Indole-3-glycerol phosphate synthase compare
PP_4475 -4.0 -11.7 succinylglutamate desuccinylase compare
PP_5155 -3.9 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2001 -3.9 -8.5 O-succinylhomoserine sulfhydrylase compare
PP_4724 -3.8 -8.3 Carbamoyl-phosphate synthase small chain compare
PP_2370 -3.7 -4.1 conserved protein of unknown function compare
PP_5097 -3.6 -14.6 homoserine O-acetyltransferase compare
PP_5128 -3.6 -7.9 Dihydroxy-acid dehydratase compare
PP_4943 -3.5 -2.4 putative Glycosyl transferase compare
PP_4482 -3.5 -6.8 Transcriptional regulator, AraC family compare
PP_4479 -3.5 -8.4 arginine N-succinyltransferase, subunit beta compare
PP_4940 -3.4 -9.0 Putative glycosyltransferase compare
PP_4782 -3.3 -6.0 Phosphomethylpyrimidine kinase compare
PP_0966 -3.3 -13.3 Histidinol dehydrogenase compare
PP_0164 -3.3 -10.6 conserved protein of unknown function compare
PP_0293 -3.3 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0417 -3.3 -16.5 Anthranilate synthase component 1 compare
PP_0292 -3.2 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4699 -3.2 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4485 -3.1 -10.4 histidine / lysine / arginine / ornithine ABC transporter - permease subunit conserved
PP_0967 -3.1 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0421 -3.0 -8.6 Anthranilate phosphoribosyltransferase compare
PP_2327 -3.0 -9.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0289 -3.0 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1233 -3.0 -4.6 sulfurtransferase compare
PP_5014 -3.0 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0339 -2.9 -2.0 Pyruvate dehydrogenase E1 component compare
PP_3821 -2.9 -10.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1025 -2.9 -13.7 2-isopropylmalate synthase compare
PP_1664 -2.8 -6.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_2168 -2.8 -12.2 Transaldolase compare
PP_1348 -2.8 -5.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4486 -2.7 -11.6 lysine / arginine / ornithine ABC transporter - periplasmic binding protein conserved
PP_4700 -2.7 -2.6 pantothenate synthetase compare
PP_4799 -2.7 -4.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4695 -2.6 -8.7 Sensory box histidine kinase compare
PP_1734 -2.5 -2.9 Probable septum site-determining protein MinC compare
PP_5145 -2.4 -19.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0127 -2.4 -6.3 Thiol:disulfide interchange protein compare
PP_4364 -2.3 -4.8 putative Anti-sigma F factor antagonist compare
PP_5114 -2.3 -2.9 putative adenine methyltransferase compare
PP_4484 -2.2 -9.9 histidine / lysine / arginine / ornithine ABC transporter - permease subunit conserved
PP_1994 -2.2 -3.3 tRNA pseudouridine (38-40)synthase compare
PP_5095 -2.2 -3.2 pyrroline-5-carboxylate reductase compare
PP_0691 -2.2 -5.1 Glutamate 5-kinase compare
PP_4004 -2.2 -4.2 DNA translocase FtsK compare
PP_4890 -2.1 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4483 -2.1 -6.5 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit conserved
PP_4480 -2.1 -8.9 arginine N-succinyltransferase, subunit alpha compare
PP_4922 -2.0 -11.7 Phosphomethylpyrimidine synthase compare
PP_1654 -1.9 -4.2 cysteine synthase B compare
PP_0001 -1.9 -2.3 probable chromosome-partitioning protein compare
PP_0965 -1.9 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2868 -1.8 -6.4 Transcriptional regulator, Cro/CI family compare
PP_4902 -1.8 -3.0 Oligoribonuclease compare
PP_4897 -1.8 -4.8 N-acetylmuramoyl-L-alanine amidase compare
PP_5337 -1.8 -5.3 LysR family transcriptional regulator compare
PP_0914 -1.7 -10.4 GGDEF domain protein compare
PP_0420 -1.7 -5.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4964 -1.7 -3.8 D-erythrose 4-phosphate dehydrogenase compare
PP_5278 -1.6 -5.8 4-guanidinobutyraldehyde dehydrogenase compare
PP_4129 -1.6 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0948 -1.6 -3.1 Phosphocarrier protein HPr compare
PP_1493 -1.6 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2031 -1.5 -3.4 conserved protein of unknown function compare
PP_3729 -1.5 -5.1 Periplasmic amino acid-binding protein-related protein compare
PP_0630 -1.5 -1.9 DNA gyrase inhibitor YacG compare
PP_0291 -1.5 -2.6 conserved protein of unknown function compare
PP_4523 -1.5 -7.2 putative Agmatinase compare
PP_0738 -1.4 -5.4 conserved protein of unknown function compare
PP_1393 -1.4 -7.0 putative transcriptional regulator compare
PP_5338 -1.4 -2.9 aspartate ammonia-lyase compare
PP_3728 -1.4 -8.1 Sensor histidine kinase/response regulator compare
PP_5015 -1.4 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3946 -1.4 -2.4 HTH-type transcriptional repressor NicR compare
PP_3730 -1.4 -2.9 Transcriptional regulatory protein AruR compare
PP_2328 -1.3 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_0888 -1.3 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_4126 -1.3 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_4942 -1.3 -3.1 conserved protein of unknown function compare
PP_3726 -1.3 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_2341 -1.3 -2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4522 -1.3 -9.2 Transcriptional regulator, LysR family compare
PP_4120 -1.3 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_1428 -1.3 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_3721 -1.2 -6.5 arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data) compare
PP_4130 -1.2 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0758 -1.2 -4.9 conserved protein of unknown function compare
PP_t10 -1.2 -1.4 tRNA-Pro compare
PP_0393 -1.2 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3938 -1.2 -1.5 conserved protein of unknown function compare
PP_3727 -1.2 -6.8 Amino-acid permease RocE compare
PP_1394 -1.2 -7.0 putative Acetolactate synthase, large subunit compare
PP_1328 -1.1 -3.1 Protein MraZ compare
PP_5303 -1.1 -3.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4156 -1.1 -3.3 Transcriptional regulator, LysR family compare
PP_5322 -1.1 -4.8 putative metal ion transporter compare
PP_4917 -1.1 -3.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4874 -1.1 -1.4 50S ribosomal protein L9 compare
PP_4121 -1.1 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PP_4098 -1.1 -1.8 UvrABC system protein C compare
PP_4701 -1.1 -1.2 glucose-6-phosphate isomerase compare
PP_2903 -1.1 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4009 -1.1 -3.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_5184 -1.1 -6.3 glutamylpolyamine synthetase compare
PP_1303 -1.1 -6.0 Sulfate adenylyltransferase subunit 2 compare
PP_1426 -1.0 -7.6 L-aspartate oxidase compare
PP_0362 -1.0 -7.0 Biotin synthase compare
PP_2928 -1.0 -6.0 Saccharopine dehydrogenase compare
PP_4910 -1.0 -1.9 conserved protein of unknown function compare
PP_1224 -1.0 -4.1 periplasmic subunit of the TolQRA transport system compare
PP_5350 -1.0 -2.8 Transcriptional regulator, RpiR family compare
PP_1912 -1.0 -3.1 Phosphate acyltransferase compare
PP_3105 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_2060 -1.0 -2.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3722 -1.0 -4.9 Alanine racemase compare
PP_1804 -1.0 -6.1 Glycosyl transferase WbpL compare
PP_0363 -1.0 -6.9 8-amino-7-oxononanoate synthase compare
PP_3320 -1.0 -2.5 conserved protein of unknown function compare
PP_4804 -1.0 -2.9 RlpA-like lipoprotein compare
PP_3725 -1.0 -5.1 putative Acyl-CoA dehydrogenase compare
PP_5146 -1.0 -4.3 RNA pyrophosphohydrolase compare
PP_4131 -0.9 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_2335 -0.9 -4.2 methylcitrate synthase compare
PP_0766 -0.9 -6.9 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_0834 -0.9 -2.0 Sec translocation complex subunit YajC compare
PP_0927 -0.9 -6.8 aromatic amino acid transport protein compare
PP_5706 -0.9 -2.3 Sec translocation complex - SecG subunit compare
PP_2375 -0.9 -6.5 cobalamin-dependent methionine synthase compare
PP_2929 -0.9 -5.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0365 -0.9 -5.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5600 -0.9 -2.5 conserved protein of unknown function compare
PP_5227 -0.9 -4.3 diaminopimelate decarboxylase compare
PP_5201 -0.9 -1.9 conserved protein of unknown function, UPF0149 family compare
PP_1941 -0.9 -3.4 conserved protein of unknown function compare
PP_3790 -0.9 -6.2 diaminopimelate epimerase compare
PP_5327 -0.9 -5.5 putative phosphate ABC transporter, permease subunit compare
PP_0366 -0.9 -3.9 dethiobiotin synthetase compare
PP_4018 -0.9 -2.8 Acetyltransferase, GNAT family compare
PP_1629 -0.9 -3.7 Protein RecA compare
PP_3723 -0.9 -4.9 putative 2-ketoarginine decarboxylase AruI compare
PP_0364 -0.9 -4.7 pimeloyl-[acp] methyl ester esterase compare
PP_2932 -0.9 -4.8 Amidase family protein compare
PP_4977 -0.9 -6.0 5,10-methylenetetrahydrofolate reductase compare
PP_1304 -0.8 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0261 -0.8 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3286 -0.8 -3.3 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1314 -0.8 -4.1 putative NAD(P)-linked reductase compare
PP_4124 -0.8 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_0218 -0.8 -5.9 Sensory box protein compare
PP_2414 -0.8 -0.7 conserved exported protein of unknown function compare
PP_2253 -0.8 -1.5 Transcriptional regulator, GntR family compare
PP_4726 -0.8 -2.2 Chaperone protein DnaJ compare
PP_3539 -0.8 -1.7 putative Transcriptional regulator compare
PP_3190 -0.8 -2.7 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_0246 -0.8 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_2019 -0.8 -6.3 adhesin-associated MmpL efflux pump (from data) compare
PP_0250 -0.8 -1.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4937 -0.8 -2.8 toluene tolerance protein compare
PP_4379 -0.8 -3.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0809 -0.8 -5.0 disulfide bond formation protein B compare
PP_3551 -0.8 -1.7 DNA-binding response regulator, LuxR family compare
PP_0435 -0.8 -6.2 Peptidase, M23/M37 family compare
PP_1097 -0.7 -1.5 Methionine--tRNA ligase compare
PP_4895 -0.7 -1.9 tRNA dimethylallyltransferase compare
PP_2302 -0.7 -3.2 DNA-binding, ATP-dependent protease compare
PP_0916 -0.7 -2.2 Amino acid transporter LysE compare
PP_2018 -0.7 -3.0 adhesin-associated BNR repeat protein (from data) compare
PP_2324 -0.7 -3.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4008 -0.7 -4.2 ATP-dependent serine protease compare
PP_0594 -0.7 -4.6 Transcriptional regulator, TetR family compare
PP_0949 -0.7 -3.1 putative ATP-binding protein UPF0042 compare
PP_0063 -0.7 -1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3191 -0.7 -3.7 putative threonine ammonia-lyase / dehydratase compare
PP_5328 -0.7 -3.3 putative phosphate transport system permease protein compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source L-Arginine in Pseudomonas putida KT2440

For carbon source L-Arginine across organisms