Experiment set10IT006 for Pseudomonas putida KT2440
L-Arginine carbon source
Group: carbon sourceMedia: MOPS minimal media_noCarbon + L-Arginine (10 mM)
Culturing: Putida_ML5_JBEI, tube, Aerobic, at 30 (C), shaken=200 rpm
Growth: about 3.9 generations
By: Mitchell Thompson on 10/1/18
Media components: 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 9.5 mM Ammonium chloride, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 18 genes in this experiment
For carbon source L-Arginine in Pseudomonas putida KT2440
For carbon source L-Arginine across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Arginine and proline metabolism
- Urea cycle and metabolism of amino groups
- Butanoate metabolism
- Limonene and pinene degradation
- Valine, leucine and isoleucine biosynthesis
- Lysine degradation
- Histidine metabolism
- Tryptophan metabolism
- 1- and 2-Methylnaphthalene degradation
- Glycolysis / Gluconeogenesis
- Ascorbate and aldarate metabolism
- Fatty acid biosynthesis
- Fatty acid metabolism
- Valine, leucine and isoleucine degradation
- Geraniol degradation
- Lysine biosynthesis
- Tyrosine metabolism
- Phenylalanine metabolism
- beta-Alanine metabolism
- Lipopolysaccharide biosynthesis
- Glycerolipid metabolism
- Glycerophospholipid metabolism
- Ether lipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- Pyruvate metabolism
- Naphthalene and anthracene degradation
- 1,2-Dichloroethane degradation
- Benzoate degradation via CoA ligation
- Propanoate metabolism
- 3-Chloroacrylic acid degradation
- Ethylbenzene degradation
- C5-Branched dibasic acid metabolism
- Pantothenate and CoA biosynthesis
- Diterpenoid biosynthesis
- Carotenoid biosynthesis - General
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Alkaloid biosynthesis II
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: