Experiment set10IT005 for Pseudomonas putida KT2440

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
PP_t12 -3.7 -1.7 tRNA-Thr compare
PP_0082 -3.6 -4.3 tryptophan synthase alpha chain compare
PP_4678 -3.5 -13.0 Ketol-acid reductoisomerase compare
PP_1986 -3.4 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0164 -3.3 -8.1 conserved protein of unknown function compare
PP_4680 -3.3 -11.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -3.3 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -3.3 -5.9 phosphoserine phosphatase compare
PP_1995 -3.3 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4364 -3.3 -4.8 putative Anti-sigma F factor antagonist compare
PP_4723 -3.2 -11.6 Carbamoyl-phosphate synthase large chain compare
PP_0083 -3.1 -5.2 tryptophan synthase beta chain compare
PP_4695 -3.1 -10.3 Sensory box histidine kinase compare
PP_5289 -3.1 -3.0 Acetylglutamate kinase compare
PP_1988 -3.0 -7.7 3-isopropylmalate dehydrogenase compare
PP_3946 -3.0 -1.8 HTH-type transcriptional repressor NicR compare
PP_5271 -2.9 -6.8 DNA-binding transcriptional dual regulator, leucine-binding conserved
PP_2371 -2.9 -5.9 Sulphite reductase hemoprotein, beta subunit compare
PP_3603 -2.9 -6.4 Transcriptional regulator, GntR family compare
PP_3511 -2.8 -6.6 Branched-chain-amino-acid aminotransferase compare
PP_0289 -2.8 -6.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4679 -2.8 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5347 -2.8 -10.0 pyruvate carboxylase subunit A compare
PP_0293 -2.8 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5128 -2.8 -7.6 Dihydroxy-acid dehydratase compare
PP_4724 -2.6 -5.7 Carbamoyl-phosphate synthase small chain compare
PP_1138 -2.6 -4.3 branched chain amino acid transporter - ATP binding subunit compare
PP_4890 -2.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0421 -2.6 -5.8 Anthranilate phosphoribosyltransferase compare
PP_0787 -2.5 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1164 -2.5 -2.7 Transcriptional regulator, LysR family compare
PP_5270 -2.5 -5.1 D-amino-acid:quinone oxidoreductase (deaminating) conserved
PP_1344 -2.5 -1.7 conserved protein of unknown function compare
PP_0966 -2.5 -8.9 Histidinol dehydrogenase compare
PP_0290 -2.4 -5.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -2.4 -9.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1729 -2.4 -2.2 conserved protein of unknown function compare
PP_5155 -2.3 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -2.2 -3.1 Nitrogen regulation protein NR(I) compare
PP_0879 -2.2 -5.9 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1269 -2.2 -1.4 Universal stress protein family compare
PP_1088 -2.2 -6.8 Argininosuccinate synthase compare
PP_0878 -2.2 -6.6 dipeptide ABC transporter, binding subunit compare
PP_0691 -2.2 -2.1 Glutamate 5-kinase compare
PP_1137 -2.2 -6.2 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_5348 -2.2 -6.8 Transcriptional regulator, LysR family compare
PP_5093 -2.2 -1.2 twitching motility protein compare
PP_2031 -2.1 -2.0 conserved protein of unknown function compare
PP_1985 -2.1 -3.2 3-isopropylmalate dehydratase large subunit compare
PP_5095 -2.1 -1.5 pyrroline-5-carboxylate reductase compare
PP_0184 -2.1 -4.4 Argininosuccinate lyase compare
PP_5185 -2.1 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1139 -2.0 -9.3 branched chain amino acid transporter - permease subunit conserved
PP_0422 -2.0 -4.2 Indole-3-glycerol phosphate synthase compare
PP_4940 -2.0 -5.8 Putative glycosyltransferase compare
PP_2217 -2.0 -3.1 enoyl-CoA hydratase compare
PP_1079 -1.9 -4.3 Ornithine carbamoyltransferase compare
PP_1799 -1.9 -9.7 GDP-mannose 4,6-dehydratase compare
PP_0881 -1.9 -5.3 dipeptide ABC transporter - putative membrane subunit compare
PP_5571 -1.9 -1.5 conserved protein of unknown function compare
PP_1598 -1.9 -4.4 regulatory intramembrane protein RIP zinc protease compare
PP_5346 -1.9 -6.6 pyruvate carboxylase subunit B compare
PP_1912 -1.9 -4.1 Phosphate acyltransferase compare
PP_0417 -1.9 -10.4 Anthranilate synthase component 1 compare
PP_0937 -1.9 -4.7 endoribonuclease G (RNAse G) compare
PP_4122 -1.8 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0291 -1.8 -2.8 conserved protein of unknown function compare
PP_2433 -1.8 -2.4 conserved protein of unknown function compare
PP_4699 -1.8 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0965 -1.8 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0435 -1.8 -10.3 Peptidase, M23/M37 family compare
PP_3999 -1.7 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1493 -1.7 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4866 -1.7 -7.3 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_0434 -1.7 -7.7 Anhydro-N-acetylmuramic acid kinase compare
PP_0914 -1.7 -8.6 GGDEF domain protein compare
PP_1428 -1.6 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_4864 -1.6 -8.2 High-affinity branched-chain amino acid transport ATP-binding protein BraF conserved
PP_2302 -1.6 -3.3 DNA-binding, ATP-dependent protease compare
PP_4865 -1.6 -7.2 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_3198 -1.6 -1.6 Ferredoxin, 2Fe-2S compare
PP_4130 -1.6 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5015 -1.6 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0949 -1.6 -4.7 putative ATP-binding protein UPF0042 compare
PP_1801 -1.6 -8.3 Glycosyl transferase WbpY compare
PP_1140 -1.6 -8.2 branched chain amino acid transporter - permease subunit compare
PP_2001 -1.6 -5.7 O-succinylhomoserine sulfhydrylase compare
PP_0405 -1.5 -11.0 conserved protein of unknown function compare
PP_1802 -1.5 -9.6 glycosyl transferase compare
PP_4999 -1.5 -1.8 dihydroorotase-like protein compare
PP_2145 -1.5 -5.7 beta-N-acetylglucosaminidase compare
PP_4863 -1.5 -7.3 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_3821 -1.5 -5.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4961 -1.5 -1.5 putative Lipoprotein compare
PP_2309 -1.4 -1.3 conserved protein of unknown function compare
PP_1804 -1.4 -7.2 Glycosyl transferase WbpL compare
PP_1941 -1.4 -3.6 conserved protein of unknown function compare
PP_4593 -1.4 -1.6 conserved protein of unknown function compare
PP_5145 -1.4 -10.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0880 -1.4 -1.5 dipeptide ABC transporter - putative membrane subunit compare
PP_1805 -1.4 -9.7 Polysaccharide biosynthesis protein compare
PP_5146 -1.3 -5.7 RNA pyrophosphohydrolase compare
PP_5097 -1.3 -6.7 homoserine O-acetyltransferase compare
PP_5063 -1.3 -3.4 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_3924 -1.3 -2.7 conserved protein of unknown function compare
PP_0801 -1.3 -1.5 conserved exported protein of unknown function compare
PP_0122 -1.3 -2.1 conserved exported protein of unknown function compare
PP_4143 -1.3 -2.4 conserved protein of unknown function compare
PP_5098 -1.3 -4.3 methionine biosynthesis protein MetW compare
PP_1231 -1.3 -3.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1355 -1.3 -9.0 Muropeptide permease AmpG compare
PP_4124 -1.3 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_1141 -1.3 -4.0 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1309 -1.3 -4.4 conserved exported protein of unknown function compare
PP_4131 -1.3 -2.5 NADH-quinone oxidoreductase subunit N compare
PP_3926 -1.3 -1.9 short-chain dehydrogenase compare
PP_4126 -1.3 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_1764 -1.3 -3.7 Phosphoglycolate phosphatase 2 compare
PP_0900 -1.3 -2.1 PAP2 family protein compare
PP_2324 -1.3 -5.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1776 -1.3 -8.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5580 -1.3 -2.2 protein of unknown function compare
PP_0653 -1.3 -1.5 conserved protein of unknown function compare
PP_4129 -1.3 -0.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5014 -1.2 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0127 -1.2 -3.6 Thiol:disulfide interchange protein compare
PP_4734 -1.2 -5.4 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_1059 -1.2 -5.5 Uncharacterized amino acid permease YtnA conserved
PP_0834 -1.2 -1.1 Sec translocation complex subunit YajC compare
PP_5217 -1.2 -7.2 Polyphosphate kinase compare
PP_4581 -1.2 -2.5 putative amidotransferase compare
PP_0406 -1.2 -4.5 Nucleotidyltransferase family protein compare
PP_3333 -1.2 -3.2 conserved protein of unknown function compare
PP_5055 -1.2 -2.5 Sulfurtransferase compare
PP_5051 -1.2 -2.5 conserved protein of unknown function compare
PP_1780 -1.2 -8.4 putative mannosyltransferase compare
PP_5248 -1.2 -1.5 putative hydrolase compare
PP_4867 -1.2 -5.7 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) compare
PP_1994 -1.1 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_1326 -1.1 -2.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_3098 -1.1 -1.0 conserved protein of unknown function compare
PP_2370 -1.1 -1.8 conserved protein of unknown function compare
PP_4156 -1.1 -1.7 Transcriptional regulator, LysR family compare
PP_1298 -1.1 -5.2 putative amino acid ABC transporter - permease subunit conserved
PP_3286 -1.1 -3.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0848 -1.1 -2.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4937 -1.1 -2.7 toluene tolerance protein compare
PP_1468 -1.1 -1.5 Tyrosine recombinase XerD compare
PP_4799 -1.1 -1.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5236 -1.1 -4.8 conserved protein of unknown function compare
PP_1987 -1.1 -1.8 Methlytransferase, UbiE/COQ5 family compare
PP_1215 -1.1 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1439 -1.1 -1.1 conserved exported protein of unknown function compare
PP_0775 -1.1 -1.7 conserved protein of unknown function compare
PP_2328 -1.1 -3.0 Phosphoadenosine phosphosulfate reductase compare
PP_1763 -1.0 -2.2 putative oxidoreductase compare
PP_2615 -1.0 -1.8 hemolysin-coregulated protein compare
PP_4835 -1.0 -0.8 conserved exported protein of unknown function compare
PP_3415 -1.0 -4.4 Transcriptional regulator, LacI family compare
PP_2327 -1.0 -3.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4121 -1.0 -1.0 NADH-quinone oxidoreductase subunit C/D compare
PP_4936 -1.0 -2.8 O-antigen polymerase compare
PP_1186 -1.0 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_5652 -1.0 -1.3 conserved protein of unknown function, phage origin compare
PP_4923 -1.0 -5.2 Outer membrane efflux protein compare
PP_3105 -1.0 -2.0 conserved membrane protein of unknown function compare
PP_4159 -1.0 -2.1 Potassium-transporting ATPase C chain compare
PP_4379 -1.0 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2999 -1.0 -1.2 Glyoxalase family protein compare
PP_1800 -1.0 -4.5 Oxidoreductase Rmd compare
PP_5636 -1.0 -3.5 protein of unknown function compare
PP_0058 -1.0 -8.2 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_5507 -1.0 -2.3 protein of unknown function compare
PP_0608 -1.0 -2.3 putative type 4 fimbrial biogenesis protein compare
PP_0025 -1.0 -1.1 hypothetical protein compare
PP_4910 -1.0 -0.7 conserved protein of unknown function compare
PP_5557 -1.0 -1.9 protein of unknown function compare
PP_0152 -1.0 -2.1 conserved exported protein of unknown function compare
PP_0841 -0.9 -1.9 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4133 -0.9 -1.8 Transcriptional regulator-related protein compare
PP_4136 -0.9 -0.9 Transcriptional regulator, LuxR family compare
PP_0345 -0.9 -2.2 putative Heptose kinase WapP compare
PP_2320 -0.9 -4.5 conserved exported protein of unknown function compare
PP_1005 -0.9 -3.0 Heme oxygenase compare
PP_0852 -0.9 -1.9 Transcriptional regulator, Cro/CI family compare
PP_5423 -0.9 -1.7 conserved membrane protein of unknown function compare
PP_4891 -0.9 -2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1654 -0.9 -1.2 cysteine synthase B compare
PP_t11 -0.9 -1.8 tRNA-Lys compare
PP_4358 -0.9 -4.4 flagellar synthesis, switching and energizing component compare
PP_4008 -0.9 -3.2 ATP-dependent serine protease compare
PP_5201 -0.9 -1.9 conserved protein of unknown function, UPF0149 family compare
PP_1299 -0.9 -3.7 putative amino acid ABC transporter - membrane subunit compare
PP_0855 -0.9 -1.5 conserved protein of unknown function compare
PP_5617 -0.9 -2.6 conserved protein of unknown function compare
PP_3362 -0.9 -2.0 Transcriptional regulator, AsnC family compare
PP_1074 -0.9 -2.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5552 -0.9 -1.6 conserved protein of unknown function compare
PP_5610 -0.9 -1.2 protein of unknown function compare
PP_5486 -0.9 -1.0 conserved protein of unknown function compare


Specific Phenotypes

For 33 genes in this experiment

For carbon source L-Alanine in Pseudomonas putida KT2440

For carbon source L-Alanine across organisms