| | gene | name | fitness | t score | description | |
|---|
| b0464 | acrR | +4.4 | 18.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0439 | lon | +3.7 | 16.2 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b3390 | aroK | +2.9 | 6.9 | shikimate kinase I (NCBI) | compare |
| b1530 | marR | +2.9 | 5.6 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b0955 | ycbZ | +2.5 | 16.6 | predicted peptidase (NCBI) | compare |
| b1187 | fadR | +1.9 | 9.0 | fatty acid metabolism regulator (NCBI) | compare |
| b3493 | pitA | +1.9 | 12.9 | phosphate transporter, low-affinity (NCBI) | compare |
| b2517 | yfgB | +1.8 | 9.7 | predicted enzyme (NCBI) | conserved |
| b0912 | ihfB | +1.5 | 6.3 | integration host factor subunit beta (NCBI) | compare |
| b2518 | ndk | +1.5 | 4.3 | nucleoside diphosphate kinase (NCBI) | compare |
| b2830 | nudH | +1.5 | 2.0 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b0685 | ybfE | +1.4 | 5.8 | orf, hypothetical protein (VIMSS) | compare |
| b2318 | truA | +1.3 | 4.2 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1563 | relE | +1.2 | 2.9 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1217 | chaB | +1.2 | 1.6 | cation transport regulator (NCBI) | compare |
| b4685 | yrbN | +1.2 | 3.6 | expressed protein (RefSeq) | compare |
| b2937 | speB | +1.1 | 5.6 | agmatinase (NCBI) | compare |
| b4246 | pyrL | +1.1 | 3.2 | pyrBI operon leader peptide (NCBI) | compare |
| b2688 | gshA | +1.0 | 5.7 | glutamate--cysteine ligase (NCBI) | compare |
| b2259 | pmrD | +1.0 | 1.3 | polymyxin resistance protein B (VIMSS) | compare |
| b2618 | b2618 | +1.0 | 4.5 | orf, hypothetical protein (VIMSS) | compare |
| b4203 | rplI | +1.0 | 4.3 | 50S ribosomal protein L9 (NCBI) | compare |
| b1805 | fadD | +1.0 | 6.8 | acyl-CoA synthase (NCBI) | compare |
| b1627 | rsxA | +1.0 | 3.2 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2450 | yffS | +1.0 | 1.9 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2990 | hybG | +0.9 | 3.0 | hydrogenase 2 accessory protein (NCBI) | compare |
| b2058 | wcaB | +0.9 | 1.4 | predicted acyl transferase (NCBI) | compare |
| b1524 | yneH | +0.9 | 1.1 | predicted glutaminase (NCBI) | compare |
| b2570 | rseC | +0.9 | 3.5 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b1263 | trpD | +0.9 | 2.8 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b1632 | rsxE | +0.9 | 5.2 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b1827 | kdgR | +0.9 | 3.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1346 | ydaQ | +0.9 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1628 | rsxB | +0.9 | 2.1 | electron transport complex protein RnfB (NCBI) | compare |
| b2947 | gshB | +0.8 | 3.6 | glutathione synthetase (NCBI) | compare |
| b1865 | nudB | +0.8 | 1.3 | dATP pyrophosphohydrolase (NCBI) | compare |
| b0247 | ykfG | +0.8 | 1.4 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b4063 | soxR | +0.8 | 3.2 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b2938 | speA | +0.8 | 5.5 | arginine decarboxylase (NCBI) | compare |
| b0926 | ycbK | +0.8 | 3.3 | hypothetical protein (NCBI) | compare |
| b3258 | panF | +0.8 | 5.5 | sodium/pantothenate symporter (VIMSS) | compare |
| b1138 | ymfE | +0.8 | 1.6 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1253 | yciA | +0.8 | 2.8 | predicted hydrolase (NCBI) | compare |
| b1765 | ydjA | +0.7 | 1.1 | predicted oxidoreductase (NCBI) | compare |
| b4570 | lomR | +0.7 | 1.6 | no description | compare |
| b0523 | purE | +0.7 | 3.0 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b2684 | mprA | +0.7 | 2.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b2502 | ppx | +0.7 | 4.6 | exopolyphosphatase (NCBI) | compare |
| b2093 | gatB | +0.7 | 2.9 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b4532 | yncN | +0.7 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1883 | cheB | +0.7 | 3.3 | chemotaxis-specific methylesterase (NCBI) | compare |
| b1048 | mdoG | +0.7 | 3.5 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b1049 | mdoH | +0.7 | 4.9 | glucosyltransferase MdoH (NCBI) | compare |
| b0495 | ybbA | +0.7 | 3.3 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3169 | nusA | +0.7 | 2.2 | transcription elongation factor NusA (NCBI) | compare |
| b1640 | ydhH | +0.7 | 2.8 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b1316 | ycjT | +0.7 | 1.8 | predicted hydrolase (NCBI) | compare |
| b0418 | pgpA | +0.7 | 3.5 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b0125 | hpt | +0.7 | 3.5 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b1143 | ymfI | +0.7 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2904 | gcvH | +0.7 | 1.5 | glycine cleavage system protein H (NCBI) | compare |
| b4011 | yjaA | +0.6 | 2.5 | hypothetical protein (NCBI) | compare |
| b2214 | yojL | +0.6 | 3.2 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b0763 | modA | +0.6 | 3.2 | molybdate transporter subunit (NCBI) | compare |
| b0817 | mntR | +0.6 | 1.9 | DNA-binding transcriptional regulator of mntH (NCBI) | compare |
| b4458 | oxyS | +0.6 | 0.7 | global regulatory RNA (NCBI) | compare |
| b3555 | yiaG | +0.6 | 2.1 | predicted transcriptional regulator (NCBI) | compare |
| b4158 | yjeO | +0.6 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b1850 | eda | +0.6 | 1.0 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3095 | yqjA | +0.6 | 4.1 | conserved inner membrane protein (NCBI) | compare |
| b1891 | flhC | +0.6 | 2.7 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b1581 | rspA | +0.6 | 2.2 | predicted dehydratase (NCBI) | compare |
| b4557 | yidD | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b1890 | motA | +0.6 | 2.6 | flagellar motor protein MotA (NCBI) | compare |
| b1752 | ydjZ | +0.6 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b1630 | rsxD | +0.6 | 3.1 | electron transport complex protein RnfD (NCBI) | compare |
| b1803 | yeaX | +0.6 | 1.9 | predicted oxidoreductase (NCBI) | compare |
| b4577 | sgrS | +0.6 | 1.5 | small antisense RNA (NCBI) | compare |
| b2319 | usg | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b2134 | pbpG | +0.6 | 3.5 | penicillin-binding protein 7 (VIMSS) | compare |
| b3863 | polA | +0.6 | 0.5 | DNA polymerase I (NCBI) | compare |
| b1424 | mdoD | +0.6 | 3.1 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |
| b4589 | ylcI | +0.6 | 1.4 | hypothetical protein (RefSeq) | compare |
| b1915 | yecF | +0.6 | 2.9 | hypothetical protein (NCBI) | compare |
| b1148 | ymfM | +0.6 | 1.6 | e14 prophage; predicted protein (NCBI) | compare |
| b3206 | npr | +0.6 | 2.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1296 | ycjJ | +0.6 | 1.7 | putative amino acid/amine transport protein (VIMSS) | compare |
| b3221 | yhcH | +0.6 | 2.4 | hypothetical protein (NCBI) | compare |
| b1606 | folM | +0.6 | 2.9 | short chain dehydrogenase (NCBI) | compare |
| b2426 | ucpA | +0.6 | 0.9 | putative oxidoreductase (VIMSS) | compare |
| b4215 | ytfI | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b1751 | ydjY | +0.5 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4436 | ryeC | +0.5 | 0.6 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1671 | ydhX | +0.5 | 1.6 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b2597 | yfiA | +0.5 | 1.3 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b1729 | ydjN | +0.5 | 1.8 | predicted transporter (NCBI) | compare |
| b2263 | yfbB | +0.5 | 1.2 | predicted peptidase (NCBI) | compare |
| b4178 | yjeB | +0.5 | 2.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2951 | yggS | +0.5 | 2.4 | predicted enzyme (NCBI) | compare |
| b1569 | dicC | +0.5 | 2.0 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b0753 | ybgS | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b1853 | yebK | +0.5 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3070 | yqjH | +0.5 | 3.1 | predicted siderophore interacting protein (NCBI) | compare |
| b1557 | cspB | +0.5 | 0.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b1179 | ycgL | +0.5 | 1.4 | conserved protein (NCBI) | compare |
| b1299 | puuR | +0.5 | 2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2187 | yejL | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2141 | yohJ | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b3100 | yqjK | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1712 | ihfA | +0.5 | 0.7 | integration host factor subunit alpha (NCBI) | compare |
| b3149 | yraO | +0.5 | 2.9 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b1591 | b1591 | +0.5 | 1.2 | putative oxidoreductase component (VIMSS) | compare |
| b3101 | yqjF | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3781 | trxA | +0.5 | 1.6 | thioredoxin 1 (VIMSS) | compare |
| b1233 | ychJ | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b1306 | pspC | +0.5 | 1.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b3688 | yidQ | +0.5 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1795 | yeaQ | +0.5 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b0927 | ycbL | +0.5 | 1.6 | predicted metal-binding enzyme (NCBI) | compare |
| b1180 | ycgM | +0.5 | 1.4 | predicted isomerase/hydrolase (NCBI) | compare |
| b0579 | ybdF | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b2262 | menB | +0.5 | 1.5 | naphthoate synthase (NCBI) | compare |
| b0885 | aat | +0.5 | 2.2 | leucyl/phenylalanyl-tRNA--protein transferase (NCBI) | compare |
| b0348 | mhpB | +0.5 | 1.5 | 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (NCBI) | compare |
| b1388 | paaA | +0.5 | 2.0 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1917 | yecC | +0.5 | 1.9 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4394 | yjjX | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1802 | yeaW | +0.5 | 2.0 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2044 | wcaL | +0.5 | 2.0 | predicted glycosyl transferase (NCBI) | compare |
| b4325 | yjiC | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2061 | wzb | +0.5 | 1.1 | protein-tyrosine phosphatase (NCBI) | compare |
| b0331 | prpB | +0.5 | 2.1 | 2-methylisocitrate lyase (NCBI) | compare |
| b1161 | ycgX | +0.4 | 0.5 | hypothetical protein (NCBI) | compare |
| b0195 | yaeB | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b2455 | eutE | +0.4 | 1.5 | predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI) | compare |
| b3918 | cdh | +0.4 | 3.0 | CDP-diacylglycerol pyrophosphatase (NCBI) | compare |
| b0209 | yafD | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b4596 | yciZ | +0.4 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1526 | yneJ | +0.4 | 1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1728 | ydjM | +0.4 | 1.3 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b4371 | rsmC | +0.4 | 2.8 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b1262 | trpC | +0.4 | 2.4 | N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase (VIMSS) | compare |
| b4174 | hflK | +0.4 | 2.8 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b3257 | yhdT | +0.4 | 1.2 | conserved inner membrane protein (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b2614 | grpE | +0.4 | 0.9 | heat shock protein (NCBI) | compare |
| b1656 | sodB | +0.4 | 1.0 | superoxide dismutase, Fe (NCBI) | compare |
| b4513 | kdpF | +0.4 | 0.5 | potassium ion accessory transporter subunit (NCBI) | compare |
| b2698 | recX | +0.4 | 0.9 | RecA regulator RecX (NCBI) | compare |
| b1647 | ydhF | +0.4 | 1.9 | predicted oxidoreductase (NCBI) | compare |
| b2708 | gutQ | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1988 | nac | +0.4 | 1.9 | DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) | compare |
| b1038 | csgF | +0.4 | 1.2 | predicted transport protein (NCBI) | compare |
| b0842 | cmr | +0.4 | 2.8 | multidrug efflux system protein (NCBI) | compare |
| b2094 | gatA | +0.4 | 2.1 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b0784 | moaD | +0.4 | 1.4 | molybdopterin synthase, small subunit (NCBI) | compare |
| b0756 | galM | +0.4 | 2.1 | galactose-1-epimerase (mutarotase) (NCBI) | compare |
| b0219 | yafV | +0.4 | 1.3 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b1846 | yebE | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1181 | ycgN | +0.4 | 2.7 | conserved protein (RefSeq) | compare |
| b2195 | ccmG | +0.4 | 1.2 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b2674 | nrdI | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b0211 | mltD | +0.4 | 2.4 | predicted membrane-bound lytic murein transglycosylase D (NCBI) | compare |
| b1305 | pspB | +0.4 | 0.8 | phage shock protein B (NCBI) | compare |
| b4418 | sraB | +0.4 | 1.0 | unknown RNA (NCBI) | compare |
| b3926 | glpK | +0.4 | 3.2 | glycerol kinase (NCBI) | compare |
| b4464 | ygfQ | +0.4 | 2.3 | predicted transporter (NCBI) | compare |
| b0942 | ycbU | +0.4 | 1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b3884 | yihW | +0.4 | 2.3 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b4566 | yjhX | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b2026 | hisI | +0.4 | 1.7 | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (NCBI) | compare |
| b3033 | yqiB | +0.4 | 0.8 | predicted dehydrogenase (NCBI) | compare |
| b2240 | glpT | +0.4 | 3.0 | sn-glycerol-3-phosphate transporter (NCBI) | compare |
| b4568 | ytjA | +0.4 | 1.0 | predicted protein (RefSeq) | compare |
| b4521 | ycgI | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b1064 | grxB | +0.4 | 2.0 | glutaredoxin 2 (Grx2) (NCBI) | compare |
| b1629 | rsxC | +0.4 | 1.9 | electron transport complex protein RnfC (NCBI) | compare |
| b1303 | pspF | +0.4 | 1.7 | psp operon transcriptional activator (VIMSS) | compare |
| b1887 | cheW | +0.4 | 2.5 | purine-binding chemotaxis protein (NCBI) | compare |
| b2003 | yeeT | +0.4 | 1.7 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b1295 | ymjA | +0.4 | 0.6 | hypothetical protein (NCBI) | compare |
| b3014 | yqhH | +0.4 | 2.1 | predicted outer membrane lipoprotein (NCBI) | compare |
| b2823 | ppdC | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1251 | yciI | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2946 | yggJ | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0228 | yafM | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b0843 | ybjH | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b0775 | bioB | +0.4 | 1.4 | biotin synthase (NCBI) | compare |
| b1485 | ddpC | +0.4 | 1.2 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b1349 | recT | +0.4 | 1.9 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b4595 | yciY | +0.4 | 0.5 | hypothetical protein (RefSeq) | compare |
| b4416 | rybA | +0.4 | 0.7 | unknown RNA (NCBI) | compare |
| b4398 | creB | +0.4 | 2.6 | DNA-binding response regulator in two-component regulatory system with CreC (NCBI) | compare |
| b0825 | mipB | +0.4 | 1.3 | putative transaldolase (VIMSS) | compare |
| b0991 | ymcE | +0.4 | 1.0 | cold shock gene (NCBI) | compare |
| b1184 | umuC | +0.4 | 2.1 | DNA polymerase V subunit UmuC (NCBI) | compare |
| b4651 | yibW | +0.4 | 0.2 | no description | compare |
| b3527 | yhjJ | +0.4 | 3.4 | predicted zinc-dependent peptidase (NCBI) | compare |
| b3623 | rfaK | +0.4 | 0.5 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b2208 | napF | +0.4 | 1.8 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |