Experiment set10IT005 for Escherichia coli BW25113
LB Aerobic with Spiramycin 0.000125 mM
Group: stressMedia: LB + Spiramycin (0.125 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Aerobic, at 37 (C), shaken=750 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 6 genes in this experiment
For stress Spiramycin in Escherichia coli BW25113
For stress Spiramycin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Conserved gene cluster associated with Met-tRNA formyltransferase | 1 |
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
| Ribosome biogenesis bacterial | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Pyrimidine metabolism
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Aminophosphonate metabolism
- High-mannose type N-glycan biosynthesis
- Nucleotide sugars metabolism
- Glycerophospholipid metabolism
- Sphingolipid metabolism
- Naphthalene and anthracene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pseudouridine degradation | 2 | 2 | 1 |
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| cardiolipin biosynthesis I | 3 | 3 | 1 |
| cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) | 4 | 3 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 11 | 2 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 12 | 1 |