Experiment set10IT005 for Agrobacterium fabrum C58

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu2791 -7.2 -7.0 3-isopropylmalate dehydrogenase compare
Atu1687 -7.0 -9.5 anthranilate phosphoribosyltransferase compare
Atu0038 -6.6 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -6.6 -16.4 anthranilate synthase component I and II compare
Atu3740 -6.5 -7.8 fructose bisphosphate aldolase compare
Atu0679 -6.5 -6.3 ATP phosphoribosyltransferase compare
Atu0432 -6.4 -9.8 O-succinylhomoserine sulfhydrylase compare
Atu1620 -6.2 -11.1 triosephosphate isomerase compare
Atu0298 -6.1 -8.4 orotidine 5 compare
Atu2264 -6.1 -12.5 2-isopropylmalate synthase compare
Atu3707 -6.0 -4.1 phosphoserine aminotransferase compare
Atu2718 -5.8 -8.0 homoserine O-succinyltransferase compare
Atu1307 -5.8 -9.7 dihydroorotase compare
Atu2036 -5.8 -15.3 acetolactate synthase III, large subunit compare
Atu2709 -5.7 -19.7 3-isopropylmalate dehydratase, large subunit compare
Atu0017 -5.7 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3754 -5.7 -8.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1075 -5.6 -9.4 amidophosphoribosyltransferase compare
Atu1688 -5.5 -7.6 indole-3-glycerol-phosphate synthase compare
Atu0099 -5.5 -11.4 prephenate dehydratase compare
Atu0678 -5.5 -6.5 histidyl-tRNA synthetase compare
Atu1750 -5.3 -6.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu3706 -5.3 -10.1 D-3-phosphoglycerate dehydrogenase compare
Atu0035 -5.3 -14.0 phosphoenolpyruvate carboxykinase compare
Atu1205 -5.2 -16.9 threonine dehydratase compare
Atu1141 -5.2 -7.6 Phosphoribosylglycinamide synthetase compare
Atu2040 -5.2 -6.1 phosphoserine phosphatase compare
Atu1850 -5.2 -7.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0486 -5.2 -7.6 dihydroorotate dehydrogenase compare
Atu0399 -5.1 -8.5 dihydroorotase compare
Atu1845 -5.1 -4.6 phosphoribosylformylglycinamidine synthase I compare
Atu0400 -5.1 -5.4 orotate phosphoribosyltransferase compare
Atu0537 -5.1 -7.7 histidinol dehydrogenase compare
Atu1308 -5.0 -6.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2650 -5.0 -13.5 glycerol-3-phosphate dehydrogenase compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu2790 -4.8 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu3755 -4.8 -6.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4505 -4.7 -10.9 LacI family transcriptional regulator compare
Atu0039 -4.7 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -4.7 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu3469 -4.6 -3.1 phosphoglyceromutase compare
Atu2747 -4.5 -11.7 hypothetical protein compare
Atu3885 -4.5 -10.9 inositol monophosphatase compare
Atu1686 -4.5 -21.3 peptidyl-prolyl cis-trans isomerse D compare
Atu3739 -4.5 -4.1 phosphoglycerate kinase compare
Atu1140 -4.0 -7.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3482 -3.9 -9.8 pantoate--beta-alanine ligase compare
Atu0723 -3.8 -2.6 FAD dependent oxidoreductase compare
Atu2115 -3.7 -14.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1588 -3.5 -11.3 homoserine dehydrogenase compare
Atu3731 -3.5 -9.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu1844 -3.4 -2.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2015 -3.3 -12.1 aminotransferase compare
Atu0040 -3.2 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0647 -3.1 -7.1 phosphoribosylamine--glycine ligase compare
Atu1030 -3.1 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3483 -3.0 -7.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3783 -2.9 -17.2 glutamate synthase subunit beta compare
Atu2548 -2.6 -14.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3784 -2.5 -20.1 glutamate synthase large subunit compare
Atu0434 -2.3 -3.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3486 -2.2 -5.2 DeoR family transcriptional regulator compare
Atu1589 -2.2 -8.4 aminotransferase, class I compare
Atu2684 -2.1 -3.9 hypothetical protein compare
Atu4096 -2.1 -10.2 nicotinate-nucleotide pyrophosphorylase compare
Atu4098 -2.0 -12.2 quinolinate synthetase compare
Atu0422 -2.0 -2.4 ABC transporter, membrane spanning protein compare
Atu2020 -2.0 -4.8 transcriptional regulator, TetR family compare
Atu0332 -1.9 -9.2 RNA polymerase sigma-54 factor compare
Atu1456 -1.8 -9.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2726 -1.8 -13.5 pyruvate carboxylase compare
Atu2155 -1.8 -12.8 methionine synthase compare
Atu0029 -1.8 -5.3 S-adenosylhomocysteine hydrolase compare
Atu3297 -1.7 -10.0 two component sensor kinase for C4-dicarboxylate transport compare
Atu3296 -1.7 -8.8 two component response regulator for C4-dicarboxylate transport compare
Atu8115 -1.7 -4.8 Hypothetical Protein compare
Atu1748 -1.7 -8.1 NIFU-like protein compare
Atu2728 -1.7 -5.4 beta (1-->2) glucan export ATP-binding protein compare
Atu3298 -1.7 -8.8 C4-dicarboxylate transporter DctA conserved
Atu1446 -1.6 -2.6 two component response regulator compare
Atu4773 -1.6 -2.3 two component response regulator compare
Atu2207 -1.6 -1.9 two component sensor kinase compare
Atu3763 -1.6 -2.0 hypothetical protein compare
Atu1454 -1.5 -5.9 siroheme synthase compare
Atu2640 -1.5 -3.9 hypothetical protein compare
Atu4317 -1.5 -4.5 TetR family transcriptional regulator compare
Atu4711 -1.4 -5.6 two component sensor kinase compare
Atu0641 -1.4 -4.8 hypothetical protein compare
Atu3997 -1.4 -9.7 biotin synthetase compare
Atu3288 -1.4 -5.5 hydroxyethylthiazole kinase compare
Atu6114 -1.4 -2.0 hypothetical protein compare
Atu0769 -1.4 -1.6 protoheme IX farnesyltransferase compare
Atu2209 -1.4 -3.5 pyrroline-5-carboxylate reductase compare
Atu1028 -1.4 -3.0 hypothetical protein compare
Atu3429 -1.3 -2.0 hypothetical protein compare
Atu3999 -1.3 -3.2 dithiobiotin synthetase compare
Atu2205 -1.3 -3.4 transcriptional regulator, MarR family compare
Atu1685 -1.3 -1.5 hypothetical protein compare
Atu4097 -1.3 -7.5 L-aspartate oxidase compare
Atu3290 -1.3 -6.1 phosphomethylpyrimidine kinase compare
Atu0361 -1.3 -2.2 transcriptional regulator compare
Atu1470 -1.2 -1.6 Camphor resistance protein compare
Atu0346 -1.2 -1.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1462 -1.2 -8.0 glycine cleavage system protein P2 compare
Atu1463 -1.2 -4.6 glycine cleavage system component H compare
Atu1464 -1.2 -3.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu0031 -1.1 -1.6 PTS system, IIA component compare
Atu0188 -1.1 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu1810 -1.1 -1.5 hypothetical protein compare
Atu1447 -1.1 -3.0 two component sensor kinase compare
Atu2569 -1.1 -6.6 thiamine biosynthesis protein compare
Atu4616 -1.1 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu4541 -1.1 -2.7 carboxymuconolactone decarboxylase compare
Atu2798 -1.0 -4.2 precorrin-6y methyltransferase compare
Atu1163 -1.0 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3468 -1.0 -0.8 hypothetical protein compare
Atu5540 -1.0 -1.3 hypothetical protein compare
Atu2067 -1.0 -1.1 hypothetical protein compare
Atu4615 -0.9 -5.9 glucose-1-phosphate thymidylyltransferase compare
Atu1372 -0.9 -3.8 hypothetical protein compare
Atu0894 -0.9 -1.9 ABC transporter, membrane spanning protein compare
Atu0971 -0.9 -2.8 two component sensor kinase compare
Atu1445 -0.9 -4.3 two component sensor kinase compare
Atu4000 -0.9 -6.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0189 -0.9 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu1455 -0.9 -4.0 hypothetical protein compare
Atu3627 -0.9 -1.2 hypothetical protein compare
Atu3017 -0.9 -1.3 phosphoglyceromutase compare
Atu4613 -0.9 -6.7 glycosyltransferase compare
Atu1339 -0.9 -3.6 ribonuclease E compare
Atu4072 -0.9 -1.9 nodulation protein N compare
Atu0895 -0.9 -2.1 ABC transporter, substrate binding protein compare
Atu3732 -0.8 -4.1 hemolysin compare
Atu2746 -0.8 -2.4 hypothetical protein compare
Atu2793 -0.8 -3.9 cobyrinic acid a,c-diamide synthase compare
Atu0331 -0.8 -2.2 sigma-54 modulation protein compare
Atu3998 -0.8 -5.7 8-amino-7-oxononanoate synthase compare
Atu0149 -0.8 -2.6 enoyl-(acyl-carrier-protein) reductase compare
Atu2554 -0.8 -2.0 lysyl-tRNA synthetase compare
Atu2379 -0.8 -4.5 phosphomannomutase compare
Atu2633 -0.8 -2.2 RhtB family transporter compare
Atu1774 -0.8 -3.4 ABC transporter, substrate binding protein (peptide) compare
Atu5125 -0.8 -3.0 GntR family transcriptional regulator compare
Atu2183 -0.8 -4.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0300 -0.8 -3.2 methyltransferase compare
Atu5501 -0.8 -2.8 hypothetical protein compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu0923 -0.8 -3.7 hypothetical protein compare
Atu6098 -0.8 -0.9 transcriptional regulator, HTH family compare
Atu1077 -0.8 -2.6 DNA repair protein compare
Atu3289 -0.7 -2.6 thiamine-phosphate pyrophosphorylase compare
Atu1219 -0.7 -1.1 hypothetical protein compare
Atu4166 -0.7 -1.9 UDP-glucose 4-epimerase compare
Atu4618 -0.7 -5.5 dTDP-rhamnose-3,5-epimerase compare
Atu5142 -0.7 -1.3 hypothetical protein compare
Atu0795 -0.7 -1.9 hypothetical protein compare
Atu4217 -0.7 -1.2 TetR family transcriptional regulator compare
Atu3353 -0.7 -4.8 mannose-1-phosphate guanylyltransferase compare
Atu2710 -0.7 -3.7 hypothetical protein compare
Atu1359 -0.7 -0.9 dnaK deletion suppressor protein compare
Atu0190 -0.7 -3.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0953 -0.7 -1.0 hypothetical protein compare
Atu2805 -0.7 -2.9 cobalamin synthesis protein compare
Atu2800 -0.7 -1.2 precorrin-3B C17-methyltransferase compare
Atu0876 -0.7 -1.5 superoxide dismutase compare
Atu1405 -0.7 -2.2 transcriptional regulator, GntR family compare
Atu0663 -0.7 -4.3 hypothetical protein compare
Atu1667 -0.7 -1.5 hypothetical protein compare
Atu3311 -0.7 -5.4 phosphomannose isomerase compare
Atu2472 -0.7 -1.5 hypothetical protein compare
Atu4609 -0.7 -5.0 glycosyltransferase compare
Atu4486 -0.7 -2.3 nitroreductase compare
Atu3727 -0.7 -2.7 hypothetical protein compare
Atu2074 -0.7 -2.0 hypothetical protein compare
Atu8034 -0.7 -1.8 hypothetical protein compare
Atu0062 -0.7 -3.5 transcriptional regulator, ROK family compare
Atu1904 -0.7 -2.6 transcriptional regulator compare
Atu1213 -0.7 -1.7 hypothetical protein compare
Atu0977 -0.7 -2.7 serine protease DO-like protease compare
Atu0941 -0.7 -0.8 hypothetical protein compare
Atu2204 -0.7 -1.7 hypothetical protein compare
Atu1225 -0.6 -1.5 hypothetical protein compare
Atu2802 -0.6 -3.1 precorrin-8X methylmutase compare
Atu0845 -0.6 -3.7 hypothetical protein compare
Atu4446 -0.6 -3.5 hypothetical protein compare
Atu0107 -0.6 -1.4 hypothetical protein compare
Atu4001 -0.6 -3.2 3-oxoacyl-ACP synthase compare
Atu8023 -0.6 -1.7 hypothetical protein compare
Atu4187 -0.6 -1.0 tRNA-Met compare
Atu3162 -0.6 -4.0 LacI family transcriptional regulator compare
Atu3908 -0.6 -4.1 GntR family transcriptional regulator compare
Atu1629 -0.6 -1.0 transcriptional regulator, ArsR family compare
Atu1373 -0.6 -3.3 hypothetical protein compare
Atu2821 -0.6 -3.2 transcriptional regulator, GntR family compare
Atu2804 -0.6 -4.3 cobaltochelatase subunit compare
Atu1449 -0.6 -2.9 potassium uptake protein compare
Atu2809 -0.6 -3.5 cobalamin biosynthesis protein compare
Atu3963 -0.6 -3.1 GntR family transcriptional regulator compare
Atu2801 -0.6 -2.6 precorrin-2 C20 methyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D,L-Malic Acid in Agrobacterium fabrum C58

For carbon source D,L-Malic Acid across organisms