Experiment set10IT004 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0547 +1.9 9.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0138 +1.2 8.5 conserved membrane protein of unknown function compare
PP_2403 +1.2 3.0 Chemotaxis protein CheY compare
PP_0406 +1.1 6.4 Nucleotidyltransferase family protein compare
PP_1713 +1.1 3.0 Transcriptional regulator PcaQ compare
PP_1548 +0.9 4.1 conserved protein of unknown function compare
PP_1390 +0.9 4.7 conserved exported protein of unknown function compare
PP_1528 +0.9 1.7 conserved protein of unknown function compare
PP_4214 +0.9 3.6 pyoverdine biosynthesis related protein compare
PP_1898 +0.8 3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_4952 +0.8 1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5114 +0.8 1.6 putative adenine methyltransferase compare
PP_4642 +0.8 1.6 Cyclic diguanosine monophosphate-binding protein compare
PP_2899 +0.8 1.4 conserved exported protein of unknown function compare
PP_1623 +0.8 5.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_3903 +0.7 2.5 conserved protein of unknown function compare
PP_5017 +0.7 1.4 Sec-independent protein translocase protein TatB compare
PP_5267 +0.7 2.0 putative cytochrome c5 compare
PP_4004 +0.7 2.4 DNA translocase FtsK compare
PP_1573 +0.7 4.8 putative Major tail protein compare
PP_1683 +0.7 2.2 Transcriptional regulator, MarR family compare
PP_1562 +0.7 2.3 putative Phage terminase, small subunit compare
PP_4247 +0.7 2.0 Exonuclease compare
PP_2720 +0.7 1.2 conserved protein of unknown function compare
PP_5007 +0.7 2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4808 +0.7 2.0 23S rRNA m3psi1915 methyltransferase compare
PP_1560 +0.6 3.8 conserved protein of unknown function compare
PP_1224 +0.6 3.8 periplasmic subunit of the TolQRA transport system compare
PP_5144 +0.6 2.6 conserved protein of unknown function compare
PP_1544 +0.6 3.0 conserved protein of unknown function compare
PP_t12 +0.6 1.2 tRNA-Thr compare
PP_1568 +0.6 1.4 conserved protein of unknown function compare
PP_3824 +0.6 2.1 conserved exported protein of unknown function compare
PP_2740 +0.6 2.0 Transcriptional regulator, MerR family compare
PP_3637 +0.6 1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5575 +0.6 1.9 conserved protein of unknown function compare
PP_3110 +0.6 1.5 protein of unknown function compare
PP_2060 +0.6 1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2747 +0.6 1.6 conserved protein of unknown function compare
PP_1307 +0.6 2.3 AsnC family transcriptional regulator compare
PP_3766 +0.6 1.8 Lactoylglutathione lyase compare
PP_5491 +0.6 1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_4792 +0.6 2.2 conserved exported protein of unknown function compare
PP_0566 +0.6 1.2 translation-related factor compare
PP_1583 +0.6 3.1 putative Structural protein P5 compare
PP_2503 +0.6 2.7 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2889 +0.6 2.3 putative Transmembrane regulator PrtR compare
PP_1650 +0.5 5.1 Sensor protein GacS compare
PP_0181 +0.5 2.1 conserved protein of unknown function compare
PP_0958 +0.5 3.3 phospholipid ABC transporter ATP-binding subunit compare
PP_1004 +0.5 2.4 conserved protein of unknown function compare
PP_3035 +0.5 2.1 conserved protein of unknown function compare
PP_4010 +0.5 2.4 DNA replication inhibitor compare
PP_2387 +0.5 1.3 conserved protein of unknown function compare
PP_4099 +0.5 5.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0959 +0.5 1.1 phospholipid ABC transporter compare
PP_2152 +0.5 1.5 glycerophosphoryl diester phosphodiesterase compare
PP_1575 +0.5 2.0 conserved protein of unknown function compare
PP_0643 +0.5 0.9 protein of unknown function compare
PP_1445 +0.5 3.4 carbohydrate-selective porin compare
PP_1567 +0.5 3.6 Capsid protein compare
PP_1584 +0.5 2.8 conserved protein of unknown function compare
PP_1576 +0.5 2.6 putative Immunity protein compare
PP_4994 +0.5 2.6 conserved protein of unknown function compare
PP_0852 +0.5 2.1 Transcriptional regulator, Cro/CI family compare
PP_5000 +0.5 0.8 peptidase component of the ATP-dependent HslVU protease compare
PP_5500 +0.5 2.3 protein of unknown function compare
PP_2668 +0.5 1.6 ABC efflux transporter, ATP-binding protein compare
PP_1999 +0.5 1.5 membrane protein required for colicin V production compare
PP_0685 +0.5 1.8 conserved protein of unknown function compare
PP_1563 +0.5 4.0 putative Phage terminase, large subunit compare
PP_3447 +0.5 1.1 conserved membrane protein of unknown function compare
PP_5274 +0.5 1.8 conserved protein of unknown function compare
PP_3773 +0.5 1.5 conserved protein of unknown function compare
PP_0191 +0.5 1.8 Transcriptional regulatory protein AlgQ compare
PP_1293 +0.5 0.9 molybdopterin synthase small subunit compare
PP_5201 +0.5 1.2 conserved protein of unknown function, UPF0149 family compare
PP_5253 +0.5 1.4 Arylesterase compare
PP_5487 +0.5 1.5 conserved protein of unknown function compare
PP_1048 +0.5 1.0 putative protein secretion protein for export compare
PP_2003 +0.5 1.7 conserved protein of unknown function compare
PP_5548 +0.5 1.9 protein of unknown function compare
PP_3902 +0.5 1.6 conserved protein of unknown function compare
PP_5106 +0.5 1.6 conserved inner membrane protein compare
PP_2640 +0.5 1.8 Acetyltransferase, GNAT family compare
PP_5519 +0.4 1.7 conserved protein of unknown function of phage origin compare
PP_5247 +0.4 1.6 conserved protein of unknown function compare
PP_3892 +0.4 0.9 conserved protein of unknown function compare
PP_5008 +0.4 0.9 Poly granule-associated protein compare
PP_1044 +0.4 2.1 Lipoprotein UxpA compare
PP_1190 +0.4 2.1 conserved protein of unknown function compare
PP_2681 +0.4 1.2 coenzyme PQQ synthesis protein D compare
PP_t29 +0.4 1.1 tRNA-Ala compare
PP_2995 +0.4 2.5 putative DNA topology modulation kinase FlaR compare
PP_3749 +0.4 2.3 conserved protein of unknown function compare
PP_4517 +0.4 0.6 conserved protein of unknown function compare
PP_4905 +0.4 2.1 Flagellar motor rotation protein compare
PP_2055 +0.4 1.3 putative isomerase compare
PP_5558 +0.4 1.6 putative transcriptional xre family of phage origin compare
PP_1574 +0.4 3.1 conserved protein of unknown function compare
PP_5594 +0.4 0.7 conserved protein of unknown function compare
PP_3081 +0.4 1.7 conserved protein of unknown function compare
PP_5633 +0.4 2.1 conserved protein of unknown function compare
PP_5145 +0.4 3.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0494 +0.4 2.5 selenocysteyl-tRNA-specific translation elongation factor compare
PP_2002 +0.4 1.3 putative enzyme compare
PP_2537 +0.4 1.9 conserved protein of unknown function compare
PP_5445 +0.4 1.4 conserved protein of unknown function compare
PP_1779 +0.4 1.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3314 +0.4 2.1 Heat shock protein, HSP20 family compare
PP_5069 +0.4 2.0 Thioredoxin 2 compare
PP_0856 +0.4 1.2 conserved lipoprotein of unknown function compare
PP_2602 +0.4 1.6 putative 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
PP_1817 +0.4 2.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0960 +0.4 2.3 phospholipid ABC transporter binding protein compare
PP_5225 +0.4 1.0 frataxin compare
PP_2695 +0.4 1.6 Transcriptional regulator, LysR family compare
PP_0593 +0.4 0.6 putative ribosome-binding factor compare
PP_3098 +0.4 0.7 conserved protein of unknown function compare
PP_0202 +0.4 2.0 CBS domain-containing protein compare
PP_2147 +0.4 1.7 conserved exported protein of unknown function compare
PP_2243 +0.4 1.9 conserved protein of unknown function compare
PP_1580 +0.4 3.1 conserved protein of unknown function compare
PP_1187 +0.4 2.2 sensor protein compare
PP_0223 +0.4 2.2 Monooxygenase, DszC family compare
PP_2817 +0.4 2.7 Multidrug efflux RND membrane fusion protein MexC compare
PP_1325 +0.4 2.2 putative lipoprotein compare
PP_3503 +0.4 2.4 Sigma-54 dependent transcriptional regulator compare
PP_2313 +0.4 1.1 conserved membrane protein of unknown function compare
PP_3519 +0.4 0.8 putative Lipoprotein compare
PP_4373 +0.4 3.2 Transcriptional regulator FleQ compare
PP_1579 +0.4 3.4 conserved protein of unknown function compare
PP_3771 +0.4 1.8 conserved protein of unknown function compare
PP_2737 +0.4 1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3580 +0.4 1.1 conserved protein of unknown function compare
PP_3556 +0.4 2.5 conserved membrane protein of unknown function compare
PP_3235 +0.4 2.0 conserved protein of unknown function compare
PP_4540 +0.4 2.1 Hydrolase, alpha/beta fold family compare
PP_5194 +0.4 2.8 aminomethyltransferase compare
PP_4892 +0.4 2.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1565 +0.4 2.7 Phage portal protein, HK97 family compare
PP_1577 +0.4 3.2 Phage tail tape meausure protein, lambda family compare
PP_3720 +0.4 2.7 putative NAD(P)H quinone oxidoreductase compare
PP_4171 +0.4 3.3 conserved exported protein of unknown function compare
PP_1513 +0.4 1.4 Ribosomal RNA small subunit methyltransferase J compare
PP_2803 +0.4 2.3 1,3-propanediol dehydrogenase compare
PP_1310 +0.4 1.1 conserved hypothetical protein compare
PP_0794 +0.4 1.4 1-phosphofructokinase monomer compare
PP_1569 +0.4 1.6 conserved protein of unknown function compare
PP_1862 +0.4 1.5 conserved membrane protein of unknown function compare
PP_1546 +0.4 1.4 conserved protein of unknown function compare
PP_4482 +0.4 1.7 Transcriptional regulator, AraC family compare
PP_4240 +0.4 1.9 putative Microcin b17 processing protein mcbd compare
PP_3724 +0.4 2.5 putative Acyl-CoA synthetase compare
PP_1578 +0.4 2.1 conserved protein of unknown function compare
PP_5557 +0.4 1.4 protein of unknown function compare
PP_0578 +0.4 2.2 putative Methyltransferase compare
PP_1217 +0.4 1.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4329 +0.4 1.5 FlhB domain protein compare
PP_0384 +0.4 2.1 Transcriptional regulator, AsnC family compare
PP_3579 +0.4 1.9 conserved membrane protein of unknown function compare
PP_1581 +0.4 3.1 BNR domain protein compare
PP_0694 +0.4 1.6 conserved protein of unknown function compare
PP_0831 +0.4 2.1 hypothetical protein compare
PP_1124 +0.4 1.1 conserved membrane protein of unknown function compare
PP_4768 +0.4 1.8 Exonuclease compare
PP_2933 +0.4 2.4 GSH-dependent disulfide bond oxidoreductase compare
PP_3562 +0.4 1.8 conserved exported protein of unknown function compare
PP_2911 +0.4 2.5 gamma-aminobutyrate permease compare
PP_2857 +0.4 0.8 conserved exported protein of unknown function compare
PP_5628 +0.4 1.3 conserved protein of unknown function compare
PP_4238 +0.4 1.5 conserved protein of unknown function compare
PP_1864 +0.4 1.1 conserved protein of unknown function compare
PP_2384 +0.4 1.6 conserved membrane protein of unknown function compare
PP_5038 +0.3 1.0 conserved lipoprotein of unknown function compare
PP_0825 +0.3 1.2 phosphonates import ATP-binding protein compare
PP_3978 +0.3 1.8 conserved protein of unknown function compare
PP_5648 +0.3 0.8 conserved exported protein of unknown function compare
PP_3017 +0.3 1.6 O6-methylguanine-DNA methyltransferase compare
PP_0254 +0.3 1.5 conserved protein of unknown function compare
PP_2234 +0.3 1.9 Transcriptional regulator, AraC family compare
PP_1537 +0.3 1.8 conserved protein of unknown function compare
PP_4369 +0.3 2.7 Flagellar M-ring protein compare
PP_0703 +0.3 1.8 putative Transmembrane sensor compare
PP_2044 +0.3 0.6 conserved inner membrane protein of unknown function compare
PP_0711 +0.3 1.5 putative hydrolase compare
PP_4891 +0.3 1.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2653 +0.3 0.9 Transcriptional regulator, Cro/CI family compare
PP_2083 +0.3 1.7 putative Lipase compare
PP_3241 +0.3 0.8 conserved exported protein of unknown function compare
PP_2144 +0.3 1.1 Transcriptional regulator, TetR family compare
PP_4949 +0.3 1.8 putative peptidase, TldD/PmbA family compare
PP_3541 +0.3 1.0 Transporter, MgtC family compare
PP_4520 +0.3 1.9 conserved protein of unknown function compare
PP_0911 +0.3 1.9 conserved protein of unknown function compare
PP_0841 +0.3 1.2 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1890 +0.3 2.2 Type 1 pili chaperone protein FimC compare
PP_5451 +0.3 1.1 protein of unknown function compare
PP_2009 +0.3 1.9 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_4633 +0.3 2.0 conserved protein of unknown function, DUF1244 family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms