| | gene | name | fitness | t score | description | |
|---|
| b0464 | acrR | +9.7 | 71.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1684 | sufA | +7.4 | 12.7 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b2688 | gshA | +5.8 | 36.2 | glutamate--cysteine ligase (NCBI) | compare |
| b3493 | pitA | +5.6 | 37.2 | phosphate transporter, low-affinity (NCBI) | compare |
| b2175 | spr | +5.1 | 27.4 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b0605 | ahpC | +5.0 | 11.8 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b0439 | lon | +4.6 | 21.2 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b2947 | gshB | +4.2 | 16.4 | glutathione synthetase (NCBI) | compare |
| b1676 | pykF | +4.0 | 21.2 | pyruvate kinase (NCBI) | compare |
| b3164 | pnp | +3.7 | 8.6 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b4179 | vacB | +3.0 | 15.8 | putative enzyme (VIMSS) | compare |
| b4402 | yjjY | +2.7 | 4.9 | hypothetical protein (NCBI) | compare |
| b2683 | ygaH | +2.6 | 6.4 | predicted inner membrane protein (NCBI) | compare |
| b4089 | rpiR | +2.5 | 17.4 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b3778 | rep | +2.4 | 17.0 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1205 | ychH | +2.4 | 7.5 | predicted inner membrane protein (NCBI) | compare |
| b1804 | rnd | +2.4 | 11.9 | ribonuclease D (NCBI) | compare |
| b0889 | lrp | +2.4 | 2.0 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b4066 | yjcF | +2.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1217 | chaB | +2.2 | 3.3 | cation transport regulator (NCBI) | compare |
| b3916 | pfkA | +2.2 | 7.1 | 6-phosphofructokinase (NCBI) | compare |
| b3409 | feoB | +2.2 | 19.2 | ferrous iron transport protein B (NCBI) | compare |
| b4572 | ylbE | +2.1 | 2.8 | no description | compare |
| b3250 | mreC | +2.1 | 1.4 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b1095 | fabF | +2.1 | 12.6 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3408 | feoA | +2.0 | 16.1 | ferrous iron transport protein A (NCBI) | compare |
| b4025 | pgi | +2.0 | 12.4 | glucose-6-phosphate isomerase (NCBI) | compare |
| b3410 | yhgG | +1.9 | 11.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1712 | ihfA | +1.9 | 2.5 | integration host factor subunit alpha (NCBI) | compare |
| b2912 | ygfA | +1.9 | 5.7 | putative ligase (VIMSS) | compare |
| b3979 | thrT | +1.9 | 1.1 | tRNA-Thr (NCBI) | compare |
| b3397 | nudE | +1.8 | 14.2 | ADP-ribose diphosphatase (NCBI) | compare |
| b0841 | ybjG | +1.8 | 2.1 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b3009 | yghB | +1.8 | 9.3 | conserved inner membrane protein (NCBI) | compare |
| b3791 | rffA | +1.8 | 10.6 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b3198 | kdsC | +1.7 | 5.8 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2659 | b2659 | +1.7 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3806 | cyaA | +1.7 | 8.2 | adenylate cyclase (NCBI) | compare |
| b4651 | yibW | +1.7 | 0.8 | no description | compare |
| b0853 | ybjN | +1.7 | 5.6 | predicted oxidoreductase (NCBI) | compare |
| b0926 | ycbK | +1.7 | 6.7 | hypothetical protein (NCBI) | compare |
| b4647 | mokA | +1.7 | 0.8 | no description | compare |
| b1249 | cls | +1.6 | 9.3 | cardiolipin synthetase (NCBI) | compare |
| b3504 | yhiS | +1.6 | 0.8 | hypothetical protein (RefSeq) | compare |
| b3546 | yhjW | +1.6 | 14.8 | orf, hypothetical protein (VIMSS) | compare |
| b4660 | yhiL | +1.6 | 0.8 | no description | compare |
| b1346 | ydaQ | +1.6 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b3442 | yhhZ | +1.6 | 0.8 | hypothetical protein (NCBI) | compare |
| b3912 | cpxR | +1.6 | 8.5 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b1850 | eda | +1.6 | 1.8 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3463 | ftsE | +1.5 | 1.0 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4552 | yrhC | +1.5 | 1.5 | no description | compare |
| b4481 | rffT | +1.5 | 7.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3121 | yhaC | +1.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b4279 | yjhB | +1.5 | 0.7 | putative transport protein (VIMSS) | compare |
| b3027 | ygiZ | +1.5 | 0.7 | conserved inner membrane protein (NCBI) | compare |
| b3623 | rfaK | +1.5 | 1.8 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b3725 | pstB | +1.5 | 0.9 | phosphate transporter subunit (NCBI) | compare |
| b4128 | yjdK | +1.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b2847 | yqeI | +1.5 | 0.7 | predicted transcriptional regulator (NCBI) | compare |
| b2853 | ygeI | +1.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b0118 | acnB | +1.5 | 0.8 | aconitate hydratase (NCBI) | compare |
| b0449 | mdlB | +1.4 | 9.6 | fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1103 | ycfF | +1.4 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4443 | gcvB | +1.4 | 0.7 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b2682 | ygaZ | +1.4 | 2.1 | predicted transporter (NCBI) | compare |
| b4201 | priB | +1.4 | 4.1 | primosomal replication protein N (NCBI) | compare |
| b3741 | gidA | +1.4 | 4.8 | glucose-inhibited division protein A (NCBI) | compare |
| b3706 | trmE | +1.4 | 4.1 | tRNA modification GTPase (NCBI) | compare |
| b4503 | yafF | +1.4 | 0.9 | no description | compare |
| b3624 | rfaZ | +1.4 | 2.3 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0114 | aceE | +1.4 | 1.7 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b0500 | ybbD | +1.4 | 0.7 | hypothetical protein (RefSeq) | compare |
| b4155 | yjeA | +1.4 | 0.8 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b2297 | pta | +1.4 | 0.7 | phosphate acetyltransferase (NCBI) | compare |
| b1008 | ycdI | +1.3 | 3.4 | hypothetical protein (NCBI) | compare |
| b0279 | yagM | +1.3 | 0.8 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0603 | ybdO | +1.3 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2516 | yfgA | +1.3 | 5.2 | hypothetical protein (NCBI) | compare |
| b0448 | mdlA | +1.3 | 9.4 | fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3622 | rfaL | +1.3 | 2.3 | O-antigen ligase (NCBI) | compare |
| b2569 | lepA | +1.3 | 4.3 | GTP-binding protein LepA (NCBI) | compare |
| b0705 | ybfL | +1.3 | 0.6 | putative receptor protein (VIMSS) | compare |
| b4048 | yjbM | +1.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1263 | trpD | +1.3 | 3.0 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b0912 | ihfB | +1.3 | 4.3 | integration host factor subunit beta (NCBI) | compare |
| b2502 | ppx | +1.3 | 7.3 | exopolyphosphatase (NCBI) | compare |
| b2055 | wcaE | +1.3 | 0.6 | predicted glycosyl transferase (NCBI) | compare |
| b0142 | folK | +1.3 | 1.0 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b3183 | obgE | +1.2 | 1.3 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0234 | yafP | +1.2 | 1.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2352 | yfdI | +1.2 | 0.7 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b1576 | ydfD | +1.2 | 0.6 | Qin prophage; predicted protein (NCBI) | compare |
| b3386 | rpe | +1.2 | 0.8 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b3875 | ompL | +1.2 | 1.8 | predicted outer membrane porin L (NCBI) | compare |
| b4462 | ygaQ | +1.2 | 1.1 | hypothetical protein (RefSeq) | compare |
| b4253 | yjgL | +1.2 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b1349 | recT | +1.2 | 5.8 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b0658 | ybeX | +1.2 | 0.7 | predicteed ion transport (NCBI) | compare |
| b1347 | ydaC | +1.2 | 0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b1497 | b1497 | +1.2 | 0.6 | putative enzyme (VIMSS) | compare |
| b1351 | racC | +1.2 | 0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b1167 | ymgC | +1.2 | 0.6 | hypothetical protein (NCBI) | compare |
| b1499 | ydeO | +1.2 | 0.6 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b4650 | yibS | +1.2 | 1.6 | no description | compare |
| b1001 | yccE | +1.2 | 0.6 | hypothetical protein (NCBI) | compare |
| b4593 | ymgI | +1.2 | 0.6 | hypothetical protein (RefSeq) | compare |
| b2846 | yqeH | +1.2 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0606 | ahpF | +1.2 | 6.3 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | compare |
| b3723 | bglG | +1.2 | 3.4 | transcriptional antiterminator of the bgl operon (NCBI) | compare |
| b1257 | yciE | +1.2 | 0.6 | hypothetical protein (NCBI) | compare |
| b4017 | arpA | +1.2 | 2.3 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b2652 | ileY | +1.2 | 0.7 | tRNA-Ile (NCBI) | compare |
| b1553 | ydfP | +1.2 | 3.0 | Qin prophage; conserved protein (NCBI) | compare |
| b3790 | rffC | +1.2 | 4.9 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b1363 | trkG | +1.2 | 0.7 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b0326 | yahL | +1.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b4497 | yeeL | +1.2 | 0.7 | no description | compare |
| b4345 | mcrC | +1.2 | 0.7 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b2350 | yfdG | +1.2 | 6.6 | CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) (NCBI) | compare |
| b0303 | ykgI | +1.1 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1661 | cfa | +1.1 | 5.8 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b2181 | yejG | +1.1 | 4.8 | hypothetical protein (NCBI) | compare |
| b0632 | dacA | +1.1 | 6.9 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b2934 | cmtB | +1.1 | 0.7 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2625 | yfjI | +1.1 | 0.8 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b3290 | trkA | +1.1 | 1.3 | potassium transporter peripheral membrane component (NCBI) | compare |
| b3401 | yrfI | +1.1 | 6.5 | orf, hypothetical protein (VIMSS) | compare |
| b1010 | ycdK | +1.1 | 3.8 | hypothetical protein (NCBI) | compare |
| b0065 | yabI | +1.1 | 4.5 | conserved inner membrane protein (NCBI) | compare |
| b1690 | ydiM | +1.1 | 1.5 | predicted transporter (NCBI) | compare |
| b3166 | truB | +1.1 | 6.8 | tRNA pseudouridine synthase B (NCBI) | compare |
| b1165 | ymgA | +1.1 | 0.6 | hypothetical protein (NCBI) | compare |
| b1182 | hlyE | +1.1 | 0.6 | hemolysin E (VIMSS) | compare |
| b2448 | yffQ | +1.1 | 2.5 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4590 | ybfK | +1.1 | 1.2 | hypothetical protein (RefSeq) | compare |
| b2259 | pmrD | +1.1 | 1.2 | polymyxin resistance protein B (VIMSS) | compare |
| b2504 | yfgG | +1.1 | 0.7 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b3527 | yhjJ | +1.1 | 9.6 | predicted zinc-dependent peptidase (NCBI) | compare |
| b4451 | ryhB | +1.1 | 1.8 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b0310 | ykgH | +1.1 | 0.7 | predicted inner membrane protein (NCBI) | compare |
| b1854 | pykA | +1.1 | 6.2 | pyruvate kinase (NCBI) | compare |
| b1608 | rstA | +1.1 | 2.6 | DNA-binding response regulator in two-component regulatory system with RstB (RefSeq) | compare |
| b1409 | ynbB | +1.0 | 0.7 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b1505 | ydeT | +1.0 | 0.9 | hypothetical protein (RefSeq) | compare |
| b3462 | ftsX | +1.0 | 2.3 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3180 | yhbY | +1.0 | 5.6 | predicted RNA-binding protein (NCBI) | compare |
| b1551 | b1551 | +1.0 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b4215 | ytfI | +1.0 | 1.1 | hypothetical protein (NCBI) | compare |
| b4387 | ytjB | +1.0 | 4.2 | hypothetical protein (NCBI) | compare |
| b2699 | recA | +1.0 | 0.9 | recombinase A (NCBI) | compare |
| b4687 | shoB | +1.0 | 2.5 | toxic membrane protein (RefSeq) | compare |
| b2810 | csdA | +1.0 | 5.6 | cysteine sulfinate desulfinase (NCBI) | compare |
| b1097 | yceG | +1.0 | 4.4 | predicted aminodeoxychorismate lyase (NCBI) | compare |
| b3138 | agaB | +1.0 | 1.1 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b4172 | hfq | +1.0 | 0.6 | RNA-binding protein Hfq (NCBI) | compare |
| b0125 | hpt | +1.0 | 4.6 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b0136 | yadK | +1.0 | 1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0143 | pcnB | +1.0 | 4.5 | poly(A) polymerase I (VIMSS) | compare |
| b1011 | b1011 | +1.0 | 2.0 | putative synthetase (VIMSS) | compare |
| b3005 | exbD | +1.0 | 3.3 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b0407 | yajC | +1.0 | 2.4 | preprotein translocase subunit YajC (NCBI) | compare |
| b1111 | ycfQ | +1.0 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0738 | tolR | +1.0 | 1.9 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1143 | ymfI | +1.0 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4042 | dgkA | +1.0 | 1.9 | diacylglycerol kinase (NCBI) | compare |
| b1258 | yciF | +1.0 | 0.6 | hypothetical protein (NCBI) | compare |
| b2110 | yehC | +0.9 | 1.0 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b0121 | speE | +0.9 | 3.1 | spermidine synthase (NCBI) | compare |
| b3210 | arcB | +0.9 | 4.3 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1380 | ldhA | +0.9 | 2.1 | D-lactate dehydrogenase (NCBI) | compare |
| b1968 | yedV | +0.9 | 1.3 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b4483 | tatD | +0.9 | 4.4 | DNase, magnesium-dependent (NCBI) | compare |
| b4373 | rimI | +0.9 | 2.8 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1762 | b1762 | +0.9 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3119 | tdcR | +0.9 | 2.4 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b2506 | yfgI | +0.9 | 2.0 | hypothetical protein (NCBI) | compare |
| b4545 | ypdJ | +0.9 | 1.7 | no description | compare |
| b4436 | ryeC | +0.9 | 1.7 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1329 | b1329 | +0.9 | 2.1 | putative transport periplasmic protein (VIMSS) | compare |
| b2946 | yggJ | +0.9 | 4.2 | orf, hypothetical protein (VIMSS) | compare |
| b1070 | flgN | +0.9 | 1.4 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b3350 | kefB | +0.9 | 7.0 | glutathione-regulated potassium-efflux system protein (NCBI) | compare |
| b1130 | phoP | +0.9 | 0.6 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b3740 | gidB | +0.9 | 6.4 | glucose-inhibited division protein B (NCBI) | compare |
| b0393 | rdgC | +0.9 | 5.0 | recombination associated protein (NCBI) | compare |
| b3863 | polA | +0.9 | 0.6 | DNA polymerase I (NCBI) | compare |
| b3057 | bacA | +0.9 | 2.8 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b3959 | argB | +0.9 | 6.0 | acetylglutamate kinase (RefSeq) | compare |
| b1573 | ydfC | +0.9 | 1.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b2186 | yejK | +0.9 | 6.1 | nucleoid-associated protein NdpA (NCBI) | compare |
| b4704 | arrS | +0.9 | 0.4 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1502 | ydeQ | +0.9 | 0.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b3483 | yhhH | +0.9 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b2593 | yfiH | +0.9 | 5.7 | hypothetical protein (NCBI) | compare |
| b1696 | ydiP | +0.9 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1648 | b1648 | +0.9 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1527 | yneK | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b4494 | arpB | +0.8 | 0.6 | no description | compare |
| b2758 | ygcJ | +0.8 | 2.1 | hypothetical protein (NCBI) | compare |