Experiment set10IT004 for Agrobacterium fabrum C58

Compare to:

D,L-Malic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu6138 +1.9 13.2 Repressor of the acc and arc operons compare
Atu6131 +1.3 8.5 TraR Antiactivator compare
Atu4677 +1.2 2.8 hypothetical protein compare
Atu4897 +1.0 2.0 hypothetical protein compare
Atu2787 +0.9 1.7 hypothetical protein compare
Atu0926 +0.9 4.9 hypothetical protein compare
Atu0931 +0.9 6.9 penicillin binding protein compare
Atu5517 +0.8 1.9 hypothetical protein compare
Atu8054 +0.8 1.2 hypothetical protein compare
Atu0925 +0.8 2.3 hypothetical protein compare
Atu0836 +0.7 2.0 Glutathione-S-transferase compare
Atu0386 +0.6 1.9 hypothetical protein compare
Atu1573 +0.6 1.4 hypothetical protein compare
Atu0135 +0.6 1.1 uracil phosphoribosyltransferase compare
Atu3886 +0.6 4.5 lysophospholipase compare
Atu3468 +0.6 0.7 hypothetical protein compare
Atu4819 +0.6 2.7 hypothetical protein compare
Atu2657 +0.6 1.5 hypothetical protein compare
Atu5489 +0.6 4.0 hypothetical protein compare
Atu8151 +0.6 1.7 hypothetical protein compare
Atu0533 +0.6 2.1 putative inhibitor of septum formation compare
Atu4896 +0.6 1.1 acetyltransferase compare
Atu1503 +0.6 1.0 hypothetical protein compare
Atu3071 +0.5 2.6 hypothetical protein compare
Atu4498 +0.5 3.1 hypothetical protein compare
Atu4499 +0.5 3.7 hypothetical protein compare
Atu3001 +0.5 1.1 hypothetical protein compare
Atu4779 +0.5 1.8 hypothetical protein compare
Atu2634 +0.5 1.3 hypothetical protein compare
Atu1694 +0.5 1.6 hypothetical protein compare
Atu3780 +0.5 2.1 hypothetical protein compare
Atu1858 +0.5 2.4 hypothetical protein compare
Atu0201 +0.5 1.0 hypothetical protein compare
Atu1217 +0.5 2.9 cysteine synthase compare
Atu0827 +0.5 1.9 hypothetical protein compare
Atu0572 +0.5 2.3 hypothetical protein compare
Atu1499 +0.5 3.5 penicillin binding protein compare
Atu0562 +0.5 2.0 flagellar motor switch protein FliN compare
Atu5475 +0.4 0.8 hypothetical protein compare
Atu8200 +0.4 1.5 hypothetical protein compare
Atu0182 +0.4 1.9 transcriptional regulator, GntR family compare
Atu0479 +0.4 2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu1127 +0.4 1.1 molybdopterin converting factor small subunit compare
Atu5115 +0.4 0.8 hypothetical protein compare
Atu1021 +0.4 1.0 outer membrane protein compare
Atu4406 +0.4 1.8 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu1483 +0.4 2.0 cytochrome b561 compare
Atu0809 +0.4 1.1 hypothetical protein compare
Atu6189 +0.4 1.0 protein secretion chaperone compare
Atu2626 +0.4 2.1 hypothetical protein compare
Atu8181 +0.4 1.2 hypothetical protein compare
Atu3286 +0.4 2.5 ABC transporter permease compare
Atu8019 +0.4 2.2 hypothetical protein compare
Atu4787 +0.4 2.5 inositol monophosphatase compare
Atu2349 +0.4 1.2 hypothetical protein compare
Atu8150 +0.4 2.2 hypothetical protein compare
Atu5513 +0.4 0.8 cold shock protein compare
Atu2464 +0.4 1.1 formyltetrahydrofolate deformylase compare
Atu3074 +0.4 2.5 short chain dehydrogenase compare
Atu1871 +0.4 1.9 glutathione S-transferase compare
Atu8154 +0.4 1.5 Plasmid stabilization system protein compare
Atu2450 +0.4 1.2 hypothetical protein compare
Atu2200 +0.4 1.3 cold shock protein compare
Atu1847 +0.4 0.9 hypothetical protein compare
Atu1466 +0.4 0.8 hypothetical protein compare
Atu2317 +0.4 1.7 hypothetical protein compare
Atu0435 +0.4 1.1 tRNA-Gly compare
Atu3124 +0.4 1.7 hypothetical protein compare
Atu5449 +0.4 1.4 heat-shock protein compare
Atu4144 +0.4 0.6 hypothetical protein compare
Atu1302 +0.4 1.3 hypothetical protein compare
Atu4583 +0.4 1.7 superoxide dismutase compare
Atu0063 +0.4 1.7 ABC transporter, substrate binding protein (sugar) compare
Atu2282 +0.4 2.3 thymidine kinase compare
Atu4061 +0.4 1.5 exopolysaccharide production repressor protein compare
Atu3457 +0.4 2.5 ABC transporter permease compare
Atu0549 +0.4 2.6 hypothetical protein compare
Atu1868 +0.4 1.8 tRNA/rRNA methyltransferase compare
Atu0238 +0.4 2.5 oxidoreductase compare
Atu4797 +0.4 2.3 glucose-1-phosphate cytidylyltransferase compare
Atu1005 +0.4 1.6 hypothetical protein compare
Atu0580 +0.4 0.9 flagellar biosynthetic protein compare
Atu4162 +0.4 2.2 two-component response regulator compare
Atu2489 +0.4 2.3 hypothetical protein compare
Atu4070 +0.4 1.3 sarcosine oxidase gamma subunit compare
Atu0953 +0.4 0.6 hypothetical protein compare
Atu0523 +0.4 2.9 flagellar M-ring protein compare
Atu0744 +0.4 0.7 hypothetical protein compare
Atu0130 +0.4 0.9 cytidine deaminase compare
Atu1351 +0.4 1.5 hypothetical protein compare
Atu3861 +0.4 1.7 acyl-CoA hydrolase compare
Atu1184 +0.4 1.4 hypothetical protein compare
Atu3075 +0.4 2.2 TetR family transcriptional regulator compare
Atu8191 +0.4 0.9 hypothetical protein compare
Atu2368 +0.4 0.8 hypothetical protein compare
Atu2605 +0.4 1.4 hypothetical protein compare
Atu2057 +0.3 1.1 DNA helicase II compare
Atu1897 +0.3 1.8 short chain dehydrogenase compare
Atu0568 +0.3 2.4 hypothetical protein compare
Atu4323 +0.3 2.0 ribitol 2-dehydrogenase compare
Atu0193 +0.3 1.4 glutamine synthetase compare
Atu0561 +0.3 2.6 flagellar motor switch protein compare
Atu2058 +0.3 1.0 hypothetical protein compare
Atu1888 +0.3 2.5 two component sensor kinase compare
Atu0878 +0.3 1.6 hypothetical protein compare
Atu4662 +0.3 1.5 oligopeptide ABC transporter permease compare
Atu1492 +0.3 2.2 transcriptional regulator, ArsR family compare
Atu3708 +0.3 2.2 outer surface protein compare
Atu1007 +0.3 1.5 hypothetical protein compare
Atu4606 +0.3 2.0 hypothetical protein compare
Atu8165 +0.3 0.7 hypothetical protein compare
Atu1634 +0.3 1.0 hypothetical protein compare
Atu0976 +0.3 1.1 cycL protein compare
Atu0912 +0.3 0.8 Na+/H+ antiporter compare
Atu4484 +0.3 1.8 hypothetical protein compare
Atu0583 +0.3 1.8 hypothetical protein compare
Atu8128 +0.3 1.7 putative bacteriophage P2 tail protein compare
Atu1327 +0.3 1.2 NADH-ubiquinone oxidoreductase compare
Atu2537 +0.3 1.4 transcriptional regulator, TetR family compare
Atu5483 +0.3 2.3 GntR family transcriptional regulator compare
Atu0540 +0.3 1.2 hypothetical protein compare
Atu1565 +0.3 1.4 serine acetyltransferase compare
Atu6123 +0.3 2.2 conserved hypothetical protein compare
Atu3008 +0.3 0.3 hypothetical protein compare
Atu3563 +0.3 1.6 transcription elongation factor regulatory protein compare
Atu0788 +0.3 1.2 hypothetical protein compare
Atu4117 +0.3 1.4 dipeptide ABC transporter ATPase compare
Atu4133 +0.3 1.2 hypothetical protein compare
Atu1317 +0.3 1.5 metal dependent hydrolase compare
Atu6173 +0.3 1.8 component of type IV secretion system compare
Atu2339 +0.3 2.2 hypothetical protein compare
Atu0086 +0.3 0.6 ribosome-binding factor A compare
Atu3106 +0.3 1.6 sugar ABC transporter substrate-binding protein compare
Atu0555 +0.3 2.0 flagellar basal-body rod protein FlgB compare
Atu4836 +0.3 2.3 hypothetical protein compare
Atu3087 +0.3 2.2 spermidine/putrescine ABC transporter permease compare
Atu5515 +0.3 2.0 hypothetical protein compare
Atu8162 +0.3 0.4 hypothetical protein compare
Atu1250 +0.3 1.5 hypothetical protein compare
Atu1549 +0.3 1.7 hypothetical protein compare
Atu3052 +0.3 1.1 MarR family transcriptional regulator compare
Atu4540 +0.3 0.9 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4458 +0.3 1.2 hypothetical protein compare
Atu1520 +0.3 1.9 ABC transporter, nucleotide binding/ATPase protein (zinc) compare
Atu8033 +0.3 1.8 hypothetical protein compare
Atu0606 +0.3 0.7 hypothetical protein compare
Atu0557 +0.3 2.3 flagellum-specific ATP synthase compare
Atu0427 +0.3 1.3 hypothetical protein compare
Atu4644 +0.3 2.1 AraC family transcriptional regulator compare
Atu1851 +0.3 1.0 BolA/YrbA family protein compare
Atu0570 +0.3 2.5 Chemotaxis protein compare
Atu4033 +0.3 2.1 sugar ABC transporter substrate-binding protein compare
Atu5045 +0.3 1.0 hypothetical protein compare
Atu0844 +0.3 2.1 hypothetical protein compare
Atu6179 +0.3 1.3 virA/G regulated protein compare
Atu3067 +0.3 1.5 hypothetical protein compare
Atu3643 +0.3 2.3 hypothetical protein compare
Atu2431 +0.3 1.8 hypothetical protein compare
Atu0553 +0.3 1.3 flagellar hook-basal body complex protein compare
Atu1321 +0.3 1.4 hypothetical protein compare
Atu2011 +0.3 1.7 hypothetical protein compare
Atu0559 +0.3 1.4 hypothetical protein compare
Atu3467 +0.3 0.7 hypothetical protein compare
Atu2344 +0.3 1.0 lactoylglutathione lyase compare
Atu3070 +0.3 2.1 allantoate amidohydrolase compare
Atu0595 +0.3 1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3091 +0.3 1.5 hypothetical protein compare
Atu5463 +0.3 1.8 putative UDP-glucose 4-epimerase compare
Atu4228 +0.3 1.1 formyl-methanofuran dehydrogenase compare
Atu0564 +0.3 2.2 flagellar biosynthetic protein compare
Atu1056 +0.3 1.2 hypothetical protein compare
Atu3849 +0.3 1.9 resolvase compare
Atu1232 +0.3 0.8 hypothetical protein compare
Atu1881 +0.3 1.4 ABC transporter, membrane spanning protein (amino acid) compare
Atu4006 +0.3 1.4 AsnC family transcriptional regulator compare
Atu4496 +0.3 1.1 acetyltransferase compare
Atu0566 +0.3 0.6 hypothetical protein compare
Atu5121 +0.3 2.1 two component response regulator compare
Atu1190 +0.3 1.1 hypothetical protein compare
Atu0612 +0.3 1.4 ABC transporter, membrane spanning protein compare
Atu3523 +0.3 1.6 polysaccharide biosynthesis-like protein compare
Atu2120 +0.3 1.4 O-methyltransferase compare
Atu4668 +0.3 1.9 ABC transporter permease compare
Atu0480 +0.3 2.0 polysaccharide biosynthesis protein compare
Atu0578 +0.3 1.6 FlbT post-transcriptional regulator of flagellin compare
Atu1882 +0.3 1.4 usg protein compare
Atu2788 +0.3 1.1 citrate lyase, beta subunit compare
Atu5138 +0.3 2.3 gamma hydroxybutyrate dehydrogenase compare
Atu0708 +0.3 2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu5188 +0.3 1.7 zinc-binding dehydrogenase compare
Atu2333 +0.3 1.5 ATP-dependent RNA helicase compare
Atu3492 +0.3 1.1 sugar kinase compare
Atu0552 +0.3 2.3 flagellar basal-body rod protein compare
Atu1702 +0.3 1.5 stationary-phase survival protein compare
Atu2203 +0.3 1.3 hypothetical protein compare
Atu5455 +0.3 1.3 hypothetical protein compare
Atu3079 +0.3 2.1 chromate transport protein compare
Atu2141 +0.3 1.0 hypothetical protein compare
Atu0879 +0.3 1.9 RhtB family transporter compare
Atu0886 +0.3 0.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D,L-Malic Acid in Agrobacterium fabrum C58

For carbon source D,L-Malic Acid across organisms