Protein Info for UW163_RS25330 in Ralstonia solanacearum UW163

Annotation: putative hemolysin-type protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3059 PF00353: HemolysinCabind" amino acids 665 to 702 (38 residues), 13.6 bits, see alignment (E = 5.3e-06) amino acids 682 to 711 (30 residues), 30.6 bits, see alignment (E = 2.6e-11) amino acids 697 to 728 (32 residues), 28.1 bits, see alignment (E = 1.6e-10) amino acids 712 to 739 (28 residues), 10.3 bits, see alignment (E = 5.8e-05) amino acids 946 to 980 (35 residues), 21 bits, see alignment (E = 2.7e-08) amino acids 1087 to 1119 (33 residues), 36.2 bits, see alignment (E = 4.5e-13) amino acids 1111 to 1140 (30 residues), 23.8 bits, see alignment (E = 3.5e-09) amino acids 1173 to 1204 (32 residues), 32.1 bits, see alignment (E = 9.2e-12) amino acids 1216 to 1248 (33 residues), 28.4 bits, see alignment (E = 1.3e-10) amino acids 1261 to 1292 (32 residues), 28.8 bits, see alignment (E = 9.6e-11) amino acids 1306 to 1339 (34 residues), 27 bits, see alignment (E = 3.5e-10) amino acids 1332 to 1366 (35 residues), 37.5 bits, see alignment (E = 1.8e-13) amino acids 1368 to 1401 (34 residues), 31.6 bits, see alignment (E = 1.2e-11) amino acids 1672 to 1704 (33 residues), 22.6 bits, see alignment (E = 8.6e-09) amino acids 1681 to 1712 (32 residues), 17.6 bits, see alignment (E = 3e-07) amino acids 1806 to 1838 (33 residues), 28.2 bits, see alignment (E = 1.4e-10) amino acids 2169 to 2203 (35 residues), 27 bits, see alignment (E = 3.6e-10) amino acids 2591 to 2623 (33 residues), 7.3 bits, see alignment (E = 0.0005) amino acids 2701 to 2734 (34 residues), 23 bits, see alignment (E = 6.1e-09) amino acids 2737 to 2770 (34 residues), 12 bits, see alignment (E = 1.7e-05) amino acids 2772 to 2806 (35 residues), 13.5 bits, see alignment (E = 5.8e-06) amino acids 2800 to 2830 (31 residues), 15.3 bits, see alignment (E = 1.6e-06) amino acids 2829 to 2860 (32 residues), 15.7 bits, see alignment (E = 1.2e-06) amino acids 2864 to 2898 (35 residues), 13.1 bits, see alignment (E = 7.8e-06) amino acids 2904 to 2937 (34 residues), 8.8 bits, see alignment (E = 0.00018) amino acids 2913 to 2946 (34 residues), 9.6 bits, see alignment (E = 0.0001) PF05345: He_PIG" amino acids 2335 to 2419 (85 residues), 40.3 bits, see alignment (E = 3.6e-14)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3059 amino acids)

>UW163_RS25330 putative hemolysin-type protein (Ralstonia solanacearum UW163)
MAQVQDYLKYINIQMAAEALWENPGNNKRILTEGNGHASRFTAVQAEKFIADGWEVVAYQ
ESTATGFSGTLFHNKNTKENVISFRSTEFIDDAARDNEATNALEIKEKGWAFGQIDDMRK
WVNSLVDKDAGLIGNLTVTGYSLGGHLAAAFNQLFPGYANATYTFNGAGVGIVKGSEVNG
LGDVIDQFDRMWKNASGHEISFADEATQKAYLMLRAQYSGQSIPDPVTIAALTRENASAD
MAVLAEALTRVRKVLVEANRVRHLTDKNSPGGPAKIEDSQIAAGNLDYQIAVLLASKYTE
AKYSDPVTGGIAAIADRHLAPGAPLPNWFDIYAAPAPSAVANSQLHYGTPTPIFIEDQPL
YRGSIFSSAAVATLSYAEIKLLVKNYSENDFGDTHSLVLLVDSLNVQDLLTRLDPTLTQS
VVSSIFAAASKARAEAKSGTQGKAEGDVLENAISSLAQMLGVTLTPMNPSMDGGTWADKE
KREVFYSNIKAINDSNSFKGLAGNILIRQSSLDLRAAARNDFGAIAALEALSPFWIAANS
AEAKSTVEAVWANAYGDRFAAWQEDRTSGKQATFTDMWIDDRSKLLSALIAQGQQNAETG
VVQDSTVPADRTYRFEFITKKVPADPAGADKSESAAPKQPVDTDVLVLARRVASQFIPQQ
QLIKFGGTGNDVVNGTDNVLGDRLYGGGGNDTINGRAGDDYLEGDEGDDTLTGGTGNDTL
VGGKGFDSYIIDAQSGNDAIVDADGAGQIVFDGMQLTGTGRLHAKTSSSTVWSETLSSGL
EVRYYYNQQTRDLTITGGNGSSVTVRNFEDGALGIRIPQSADSVERQQAATVADLSTYEG
MRTYDQTLFPFEQVDGKDKRVPKDISFRAENVKNAYGLWGIDTNGGDDVIVGGIKQDLGL
NYGSGSWHTGGGNDRIYVSDEVTLARAIERSETDARIDARPLAIAGGAGDDAIYGDGTNS
VIFGGDGADTIVGGAGDNIIFADGDDGHAFQFSSFGLDGENDAASGQVKLFKVRIKIASM
QKERDGVGGALAEERYFEATINPLIAVDFSDLMRMHGDDVRAYVDGYAYYSGYGTLHSAA
LTTNKYGGDDVVYAGAGNDVVNAGRGNDTVFGGSGNDVIAGYDGDDFIDGGDGDDRIYGD
YVADNVGGPSFVNSSYFGYNITMRYVLDASQHGSDYLTGGAGNDYIFGGGGSDIVLGGNG
NDVLYGDDIVLPGRYAGNDYIDGGDGDDKVVGGGGADYILGGAGNDYLVGDGLYDEAQWQ
GNDYIDGGDGDDELRGGGGADTLLGGNGNDTLIGDSTEDATPTLTSSNDDYLDGGAGDDL
LQGQLGNDVLLGGDGNDRLYGDEGDDLLSGGAGDDVLHGGTGNDVLLGGDGDDSLYGDEG
NDTLYASKGSDYLAGGSGTDRYVFALGTAQSEMRDGVLQVHTIIDDADADTQIVFDAGID
PSNIKAIETPDGRLVIQFSTDGAFALTGGVNALGSVSFSDGTVIDGRDFVGKYLSTAREV
TGSYVEVRGSSRGDHLTGIGGATVNGGLGNDLIDLSGTGNTILYQAGDGADLIRPSGGQY
ALHFASGMRAEDLIVELDGGDLVFRFTGHAGDELRIRGAGGRPDLRPSTLQFGDHASVSL
SDFLSTYRQPLAGTSGNDSLLAAPQLPVAYDIQGGDGNDYLSGGDLADGLSGGNGDDFLS
GGIGNDTLIGGAGNDWLSDDQGANTFRFAAGDGSDQIDGINRDSVIAFDSSVGRSSLEMS
LEQHGKDWDVLIRYGNGDQIRVHNGFSLSGAGVPTFAFAGIRLADGGFLSTDEMLASLRG
VQGNVTSGADTLIGGGSDDVLDGAAGNDTLLGGGGRDIYRIAAGSGVDTIIDPGAGVESI
EFGEGIRVEDLVVRQVGSDLYVGTRDHSAGARILGYFSNGQKTWNISASGSVLDIQAALA
LPMTEVERLRNAFEERQYFDIAARLKANDGVEFYGQRSQVSGRVAPWQYDPPGIINSSLT
SKDVLLRDEALHPSSSESYADNGTIQLVDSRTITHADIQQVRVPGRIYEERTYYGGVSGV
LYPPGTTFFTMTLPDGTTRRMVKEPDSWETRYNGTVTETQSNTWTSRVFDHRVELHHVVG
DDSSETLILNPVDESGNKGAIDFRGSVSAGGGDDVIDLSAAQANDHDWWTTPFGYSPSVV
DVGYGAFIDGGDGNDTLIGTEGMDILVGGTGNDVMAGGFGADTYWIGRSEGDADIIDDEG
HVSSEFLEEANAYGGVLPSDVVEFGPGIAVSDLTYALFERQDKQGTILRLFIDKTQHVDI
LYDKLRNSGPGEVGIELFRFASGETLTTDNLLATIEPFLQIMRPVVNWASNFNENQWAVQ
DGEFSMAVPADLFMQTGRGASITVLQADGSPLPSWLQYDAATGMLSGQAPHGANAYAFRI
VATDAAGNQSSRNLTLNVNGDRIETVQQPDGSRQTTVQDMDGNRITTYYAADGTRLRDEW
SKTDGSRGTDTFSADGSSVHTSDSDAAGHTVVADDGQGHVTHTYQTTQSFQTLVGSGTND
TFVVDHGGVTLVEPAGGSNTVLQTSVNFTVPDGIDQIVLTGNGLQRVVGNQANDSFAVKG
AAGSSAELQLGDGNNTVSSQDSNVTVYVGAGNNDLILGDGGNIVTVNRSQHSANASNGNN
KVYLGNGGNQVSLGDGSNIVGVGTGDNAITVGNGDNTLYAGHGAGTNTITFGDGANVVTV
GDGANTVVGGNGRNTIWGGNGGNHVTVGSGNDTIGLGNGSNVVSAGDGANNVSVGNGDNQ
ITLGGGHNTVNAGSGANTVIAGDAGNAVYAGDGANTIKLGSGADTIGVGGGNNTIDAGGG
DNTIYAGRGAGNNVITAGDGRNVVTVGNGTNQITLGRGNNAVNGGNGGNTLTTGDGNNTV
WMGAGSNLIVVGNGNNTVGVGSADGSHNTIQVGNGVNAIEVGAGANDIYVGNGTDTVKTG
NGVNTLHLGTGQVTLTNYGGQDTVYLSSSVQEDQLWFTQDGNDLLVTVDGTSSNLRLTDW
FNGATHATLVASDGHQLVDSQVASLVQAMAQFTPPPAGQTSLSPEQRESLMPVITSSWK