Protein Info for UW163_RS19665 in Ralstonia solanacearum UW163
Annotation: AraC family transcriptional regulator
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 96% identical to HRPB_RALSO: Regulatory protein HrpB (hrpB) from Ralstonia solanacearum (strain GMI1000)
KEGG orthology group: None (inferred from 96% identity to rsl:RPSI07_mp0820)Predicted SEED Role
"Regulatory protein HrpB"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (477 amino acids)
>UW163_RS19665 AraC family transcriptional regulator (Ralstonia solanacearum UW163) MLGNIYFALASGLAARERLTEYANAVFAADFDRAYQLVDHHSTQRGKSDDYAGVLAMADA SLLLECDEEAEEGFRLAQRLIRHSDDQLRVVSCRNTGWQALLRDRYAAAASCFARMAEDD GATWTQQVEGLIGLALVHHQLGQQDAADEALQAAREAADGRSDRGWLATIDLIIYEFAVQ AGIRCSNRLMEHAFWQSAEMGATLLANHGGRNGWSPTASQEASMPALIQRRAEYLGLLRR MADGDRATIDPLLAILNHSRKLGSRLLMQTKVEVVLAALSGEQYDVAGRVFDQICNRETT YGARRWNFDYLYCRAKMAAQRGDAAGALKFYTSYMQDALRCLRTETVNLRRASAAVPVAS RASDDVSARLSAKYRRAYRYIIENIERSDLTTREVAAHINVTERALQLAFKSAVGMSPSS VIRRMRLEGIRSDLLDSERNPSNIIDTASRWGIRSRSALVKGYRKQFNEAPSETIWR