Protein Info for UW163_RS13355 in Ralstonia solanacearum UW163

Annotation: cytochrome c1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 724 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF10605: 3HBOH" amino acids 36 to 713 (678 residues), 999.6 bits, see alignment E=3.7e-305

Best Hits

Swiss-Prot: 93% identical to HBOH_RALSO: D-(-)-3-hydroxybutyrate oligomer hydrolase (RSc1334) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K07518, hydroxybutyrate-dimer hydrolase [EC: 3.1.1.22] (inferred from 98% identity to rsc:RCFBP_20092)

Predicted SEED Role

"D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22)" in subsystem Polyhydroxybutyrate metabolism (EC 3.1.1.22)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.1.22

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (724 amino acids)

>UW163_RS13355 cytochrome c1 (Ralstonia solanacearum UW163)
MNTTRDTNRLRRRASLSGLALAGSLLLAGCGVLGLAGCGGDNNNSLSGNVKPSFVGAVTV
TRHDGANDDLLTAGLGAAGLASASAPSVATPTAPTAAELRRLAIYANYRALVDTAANGGY
GTLYGPSVDVNGNATSGSGMVPGVEYVAYSDDGTGQQNVVLLVQIPDAFDPANPCIITAT
SSGSRGIYGAISTGEWGLKHKCAVAYTDKGTGAGPHDLATDTVPLQDGTRTTRTAAGSNA
QFAAPLTSSQLAAFNAATPNRLAFKHAHSQRNPEKDWGLFTLQAVQFAFWSINDKLGASG
MPAGSLPVRRDNTIVIASSVSNGGGAAIAAAEQDTAGWIGGVAVGEPGLNLPPSANVQVV
RGGVALPVSGKPLFDYVSYANLFRMCAASSSSVSAAPTQSFFAGAVGWPASVQANRCAAL
RAGGLLSSGTAAAQADEALQKLHTYGWEPESDLVHASMSYFEIDPSVATTFGNALARASV
LDNLCNFSFAAVDSAFHPTAVNATALAQMAALGGGIPPTSGVQLINNLAQGGPTQSKQSV
DSSGTQAANLDGAQCLRNLLTGGDATSLALQTGLAQTLRTGNLRGKPALIVHGRSDALLP
VNHGARPYLGLNAQFDAGSRLSYIEVTNAQHFDGFIDLLPGYDTLFVPLVVYEQRALDAV
YANLKNGTPLPPSQVVRTTPRGGTAGAAPAITAANVPNFTMTPTAGDSISVSVSGGVATV
SVPN