Protein Info for RR41_RS05295 in Acinetobacter baumannii LAC-4

Annotation: Ig-like repeat protein Blp2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 723 PF22783: BapA_N" amino acids 1 to 117 (117 residues), 88.6 bits, see alignment E=8e-29 PF17936: Big_6" amino acids 168 to 247 (80 residues), 69.5 bits, see alignment E=7e-23 amino acids 252 to 327 (76 residues), 53.3 bits, see alignment E=8.2e-18 amino acids 335 to 412 (78 residues), 77.4 bits, see alignment E=2.5e-25 amino acids 419 to 496 (78 residues), 69.5 bits, see alignment E=7.3e-23 PF19077: Big_13" amino acids 522 to 601 (80 residues), 34.3 bits, see alignment E=8.2e-12

Best Hits

KEGG orthology group: None (inferred from 76% identity to abc:ACICU_02649)

Predicted SEED Role

"FIG00350563: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (723 amino acids)

>RR41_RS05295 Ig-like repeat protein Blp2 (Acinetobacter baumannii LAC-4)
MTRIIVASKEGLDVLQDGQLNKVVLNQPTIIQIGVSQKDIASMEKQGGSLVIHLKNGETI
VLENFFNEATNTTEHSLVFPTEQGKFVEAQFDAQGKVIDYRGLNHVTDLAYTSTSPSAAT
MAVDNDPSFSMGNVLKAGLAVLAAEGLYLWAFDKDDKDDSPVNVPTTAKPTEVKLADDAV
TVTGKAEANAKIYIKDLSGNVIASGNADASGNFTIKLDKPLTDGNKLNVSAQNEGGKESS
AYSITGPKDTIAPDAPEAQLNEDGSILDGKTEPDAKVFIYDANDKFIDTVTASKEGKFSY
KFTPPLTGGKVVAIDLAGNESKPTLIFAGKDTIPPKAPLLEVNKEGTVIEGTAEANTKVY
VKDADGNVIGTGTANAQGEFQITLSSALKDSQKATIIVEDAAGNTSKPLEIKSGYDTLAP
DKPTAQINADGTTVTGTAEANAKIEIKNSADKIIGTGTADANGKFTITISSVLTVKDKAY
VSAIDASGNSSVTQEINGIKPDRPVLNRVDNDNGTTVKIITANSETDDTTPKFTVQVESH
ASLTIYDNGVAISIIEIGDLGKNTTWSFTLDKELSLGKHTITLTQKDAAGFTSEVSSPFT
FYVVAPKAASLSETSVDTLSTEGPSLADSVGLHTLKAAQSTTTETNNPQKSIPLDDLLKS
STASESEPIAKLLSSTALKTTQASEPIEVNASVGQTTSNADHPLPDTTSSVLQNLLDQTY
PVV