Protein Info for RPSI07_RS15395 in Ralstonia solanacearum PSI07

Annotation: UPF0182 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 917 transmembrane" amino acids 16 to 42 (27 residues), see Phobius details amino acids 56 to 79 (24 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 287 to 309 (23 residues), see Phobius details PF03699: UPF0182" amino acids 16 to 790 (775 residues), 940.3 bits, see alignment E=4.1e-287

Best Hits

Swiss-Prot: 77% identical to Y1615_CUPNH: UPF0182 protein H16_A1615 (H16_A1615) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)

KEGG orthology group: K09118, hypothetical protein (inferred from 100% identity to rsl:RPSI07_1591)

Predicted SEED Role

"INTEGRAL MEMBRANE PROTEIN (Rhomboid family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (917 amino acids)

>RPSI07_RS15395 UPF0182 family protein (Ralstonia solanacearum PSI07)
MRSQVRSGVRLKRHAITVAVAVIGLIFVGRVTGVLVDGLWFASIGYVDVFWTVLSARVLL
FAAVFAVSAGAIGASGFLAHRYARSFRLLQGGADFSPRSSEIISELAEQVAPHVTWRASI
AAGAVVLGLLIAAGQLSNWDLALRFLRQVPYGERDPIFGKDISFYLFSLPAYVALKNWLL
QVLFCSTIVAVVVYGVRGDIALDRSQRRFSPAAAMHGSALLGVFFALKGWSYGLDRFLLL
YGDNGVVVGAGYTDIHVALPVLWLLASLAAAASVASWANMRWRNPRVLSASALLVFGSSL
VFAWIYPALFQRFYVKPSELQLETPYLEYNIALTREAYGLGKITVKPFPAEQGLNLASLQ
ANRATIDNVRLWDVQPLMDTYAQLQEIRTYYKFLAVDIDRYRLDAGYRQVMLSARELEPA
MLAASAQTWVNLHLLFTHGNGVVMSPVTEKSTEGLPSLYLQDIPPVTNGGPTISEPRIYF
GGGGEGYVIVKGSVPEFDYPKGKDNVYTAYSGRDGVAIGSLGLRSLFAWEFDDPNILLTG
YITDDSRILFHRNIQDRVHTIAPFLRLDHDPYVVASGGRLFWMQDAYTTSRWFPYAQPSM
GDANYIRNAVKVVIDAYNGTVDFYVSDPADSILRTYQRIFPGLFKPLAAMPPDLQQHIRY
PEDLFLIQAQLYRTYHMEAPEVFYNREDLWQFPRGLAGIDSGNASATTMTPYYMIMRLPG
EPRAEFVLLLPMVPSQRENMIAWLAARCDPPDYGKLILYAFPKDKLVYGPFQIEARIQQN
TEISQQISLWNQMGSRVIRGHLLVVPIENSILYVSPLYLRAASGQLPELKRVIAAYGDRV
VMEETLGEALAALFKETVPVTSPLRGTADTRAREALAHYDRAIERLKAGDWSGFGSELEA
LRPLLEALGTGDARHQR