Protein Info for RPSI07_RS13495 in Ralstonia solanacearum PSI07

Annotation: ZIP family metal transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 signal peptide" amino acids 6 to 6 (1 residues), see Phobius details transmembrane" amino acids 7 to 33 (27 residues), see Phobius details amino acids 40 to 57 (18 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 242 to 260 (19 residues), see Phobius details PF02535: Zip" amino acids 10 to 113 (104 residues), 36.8 bits, see alignment E=1.4e-13 amino acids 97 to 259 (163 residues), 108.8 bits, see alignment E=1.7e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_1195)

Predicted SEED Role

"Zinc transporter, ZIP family" in subsystem Transport of Zinc

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>RPSI07_RS13495 ZIP family metal transporter (Ralstonia solanacearum PSI07)
MTADSTLLGILLATALSGIGSMAGAAVLSLTVLARVVDRMVSFSVGVLLATSLLHSLPEA
FESHHGIEPNTHALFATLLAGLLGFFLLEKISLIRHSHHHEGDGHGHHHGHDRQEAGRSG
LMILVGDGLHNFSDGIVIAAAFLADTRVGIVTALAIAAHEIPQEIGDFMVLLNAGFSKTR
AFVYNLICSVCALVGAVLGYYLLDRMTAWIPYVLVVASSSFIYIAVCDLMPQMKRRPRWQ
ESAVQIALVTAGITMIFLLTDGLHHHAH