Protein Info for RPSI07_RS11660 in Ralstonia solanacearum PSI07

Annotation: calcium-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 2942 PF00353: HemolysinCabind" amino acids 520 to 541 (22 residues), 12.8 bits, see alignment (E = 5e-06) amino acids 545 to 562 (18 residues), 16.2 bits, see alignment (E = 4.4e-07) amino acids 727 to 753 (27 residues), 25.4 bits, see alignment (E = 5.6e-10) amino acids 760 to 780 (21 residues), 12 bits, see alignment (E = 8.7e-06) amino acids 784 to 809 (26 residues), 7.9 bits, see alignment (E = 0.00017) amino acids 804 to 835 (32 residues), 17.3 bits, see alignment (E = 1.9e-07) amino acids 868 to 901 (34 residues), 25.9 bits, see alignment (E = 4e-10) amino acids 981 to 1011 (31 residues), 15.8 bits, see alignment (E = 5.5e-07) amino acids 1015 to 1047 (33 residues), 28.2 bits, see alignment (E = 7.5e-11) amino acids 1050 to 1071 (22 residues), 25.4 bits, see alignment (E = 5.5e-10) amino acids 1082 to 1115 (34 residues), 28.3 bits, see alignment (E = 7e-11) amino acids 1117 to 1147 (31 residues), 23 bits, see alignment (E = 3.2e-09) amino acids 1158 to 1188 (31 residues), 23.6 bits, see alignment (E = 2.1e-09) amino acids 1198 to 1229 (32 residues), 27.4 bits, see alignment (E = 1.3e-10) amino acids 1237 to 1259 (23 residues), 17.1 bits, see alignment (E = 2.3e-07) amino acids 1268 to 1301 (34 residues), 26.9 bits, see alignment (E = 1.9e-10) amino acids 2423 to 2456 (34 residues), 16.7 bits, see alignment (E = 2.9e-07) amino acids 2464 to 2489 (26 residues), 8.9 bits, see alignment (E = 8.1e-05) amino acids 2492 to 2527 (36 residues), 14.4 bits, see alignment (E = 1.5e-06) amino acids 2530 to 2563 (34 residues), 16.8 bits, see alignment (E = 2.7e-07) amino acids 2566 to 2599 (34 residues), 15.9 bits, see alignment (E = 5.2e-07) amino acids 2593 to 2625 (33 residues), 19.3 bits, see alignment (E = 4.4e-08) amino acids 2601 to 2635 (35 residues), 12.5 bits, see alignment (E = 6.2e-06) amino acids 2658 to 2690 (33 residues), 16.8 bits, see alignment (E = 2.7e-07) amino acids 2684 to 2718 (35 residues), 20.1 bits, see alignment (E = 2.6e-08) amino acids 2730 to 2760 (31 residues), 14.3 bits, see alignment (E = 1.6e-06) amino acids 2806 to 2835 (30 residues), 8.1 bits, see alignment (E = 0.00015)

Best Hits

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2942 amino acids)

>RPSI07_RS11660 calcium-binding protein (Ralstonia solanacearum PSI07)
MTSIHDAFVNALLADAAYVSGLTANSSGEKLASFLATRMTTSLANYIGDNFTVVTQVETD
PVLGSSFDATVWKDNNSGKLYVSMRGTQQVEDFIVDGDLALTGNARAQLVDMVNWWFRET
TPAGQAARQILWNAVTERYEEANPSAGTGDISAADLVGGIEVNGHSLGGYLASAFTRLFG
TQAHVQHTTTFNSAGFAPGSESAFLQLQNVVGIGYGMGRFPSQAEQTNYFAKNGINLTTN
SFWFNQVGQRVPLFNEESADQISNHYMYKLSDTLSLADTLVKLDPSLDFSKLNAILEAGA
NKTQKSLESVLDGFRRIFIGNNIDPTSIGDVSGDASSRTEYQKNISDLGAAITAWGGTLE
IVSLSSKSANALAADAKTDFGSLLALQFELSFAVRGGGLGNLWQNNHQDLYTYWRADQAL
SVADRAVGKANFSDQWLSDRAKLLSWIMYRNRYDDPTGQKILTSNTADQWHFEDGNTKTS
IDIGPTGGFLQPTLHAILFGADGASDTLKGAAGGSHLFAGANSAETLQAGPGNDYLEGGR
GHSSDTLIGGAGHDTLMAGNGDTVLLIGGSGGDTLVGGTGVTTFQFASGDGQDIVINASG
LDKLVIDGVKLTGGKAIAPDNKVWQSNENGAITFTLIQLGNEQQDLQIAYGNHDSILVKN
YTSGAFGITLESYASSTTQTSPTSESQPDNVINGDLNPINFGTNDNPQYHRDTLGNLITD
PNSPALGRDDTLFGSSGNDLINAGGGNNQIYGAQAGAAQGGDDTIIGGDGNNVIHDGDGN
IRVTVGNGANQIFLGDGANTLVMGTGSDYVAVGGGNNQIEGNGGRDVIVVGNGNNAIFAN
KKIDLASAIANRDSLSASGLQGDLIAVGNGNNTIVSGTGNDLVVVGGGNDVVILGPGNDT
VVGGEVASQIYAAWSAQSVMSDASTGGQPSTGHFVNTVTHYQGLTTASSGGYMPSAELSA
LLAQYPGIQPYNVDPNGNPNGGGSETIFGGSGNDLIITSNGDCYVDAGSGNSLVYAGAGN
DTIFAGVGNSTISGGGGDDYIDGESGNHLIAGGAGNNTIFGGSGNDTIYAGVPDGASTGD
INAGNNYVDAGSGNSIVFGSAGNDTLMAGSGQDTLVAGNGNTTIYGGTGVDLIYGGSGND
LIYAGDGGTAGAATTVVAGSGNTTIYGGLGVDVIYGGAGSDVIYVGDGGSAAQRSVVYAG
SGDTTVYGGAGFDEIHGGSGNDVLYAGDGGSVDAPTVVYAGTGNSTLYGGAGVDILSASA
AGSTLLVGGSGQETLLGGVGDDTLVAGTGNDSLDGGAGSNTYVFNSGFGSSEIVQSGGTE
ILQFGSGVSPSDLSISATLGANGAPALEISAGNGSVIIDGAFSGQVSAVAFADGSTMSLA
QLMTQAEIVSSTITSTADTSVAFDASGNIRVTKYADDGTALSDTWQSVDGSHGIDTFQPN
GSSRGQSWYANSRTGVSFGDGTGNNTTYIYNALGNLVADNWTQSDGSFGTDTINGDGSSA
GTATNADGSRSTYTADSQGNKTTKNYSSAGVLTDDAWTHADGSSGSDVFDSNGNVTQATT
IDAHGSESVQTNDGQGNTSTTQFDASGNKTGDTWQAADGSHGSDQLSNGTWTSLQYAADG
SYARSTKDALGDATTQQFNAGGVMTGSSWSNADGTHGDTTLATDGSSTSASYHRDGSYAQ
TITSATGNTVTDYYSSTGQLLYDAWHNADGTSGHDNFTGVASDVTANFQRAGVYALASST
PDGAIEIDIHNGQHDKVFSISSSTSSEPSYGGGYGGGYGGGYGGGYGGSYASQVIGSDLT
QVTYGAGGSQAYQEATLDQGAGSMRSVDVQADGSDLASLWKAGSFDGQSIVSSTTSYDVQ
GAEFTGTPASSLTYDVITPWGSGVKIQNSNGLVYYYDGVGGVQNLGGWTGPGPVVAVSGV
NAAINFANGNATTDVTYSDGGYDHYTTYHGLIVSEDWSDGHGSHGTLTTTYPAGQSPIGS
QAVITRTTTNAAGYTTTVTTSGSTEVTTRYYPDGTVAEVSRSEPSTMGLQADTLRDPAGN
VFSSTYTDPTSANGPTVQTVSTDAAGDTITTLYTYRAVDYSYVPSTATSTWTTQDGAHVS
ATFDLSSGAGTETINYVDGTYSVVSSDASGGYFARNYDASGALVSDVWQDGQGSNGIDTI
QASGIVDSTVTYHLAQGVTEMASTTTQADGSYVRTWTKTDGSTGTDIHHADGTGSGTVQY
ANGTYSTYTSTAQGVVTTLNYDASGNQVSYAVAATDSAGNWLQTAYDLNGIKLSDQWTRT
DGTTGSDVFNADGPVETKTSQTDAAGITTTTDTVTQSDGSFLRTWSKSDGSSGTDIRNAD
GSMSGTTDSPTGGHGTYTDDGHGNVAHTLTATADDQTLAGTSAGVNALRADAAYSNVTLQ
GGPGNDTFVLNAVAGSRDVAQLGDGNNMVYGQDGDDEVDLGAGDNTVNLGSGSNYIGSTQ
SSNAGNGNNAIYLGDGQNTVWLGDGDNILGVGTGRDWIHVGNGNNTLYAGRRSANDTIQF
GDGNNTVTVGDGANAVTVGNGENKIWGGNGSNQINVGDGNDTIGLGNGNNIVKTGSGASS
VSVGDGSNQLWLGEGANTISAGAGDNVIRGGNGDNAAYVGNGNNDVEFGGGNNTVGLGTG
NSTVILGGGSNAIYAGHGTGSNTIFVGDGANVVTVADGANYINAGSGADHVYGGNGDNTI
WLGNGVDTVNLGDGANSIHIWDGDSAVYVGNGNNQIALGRGNDAVSAGNGNNTLTTGDGN
SNIWMGTGNNHIQVGNGSNTIGVGSADGSTNTIQVGDGNNAIAVAAGTNDIRVGNGTDTV
QTGNGVNTIHLGVGQVTLTNYGGQDTVTFASTVQDDQLWFAQDGNDLLVTVDGTSSNLRL
TDWFNGATHATLVAGDGHQLIDSQVASLVQAMAQFSPPSAGQTTLLQPQQDSLAPVIAAS
WR