Protein Info for RPSI07_RS11195 in Ralstonia solanacearum PSI07

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details PF08269: dCache_2" amino acids 35 to 189 (155 residues), 99 bits, see alignment E=6e-32 PF17200: sCache_2" amino acids 37 to 184 (148 residues), 109.2 bits, see alignment E=3.7e-35 PF17201: Cache_3-Cache_2" amino acids 69 to 182 (114 residues), 39.2 bits, see alignment E=1.1e-13 PF00015: MCPsignal" amino acids 325 to 481 (157 residues), 185.2 bits, see alignment E=1.9e-58

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to rsl:RPSI07_0708)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (515 amino acids)

>RPSI07_RS11195 membrane protein (Ralstonia solanacearum PSI07)
MRQWTLKAKLRLALALMWLGLVGVGIWSAMETRATMLDERKTGLQNLVDAAEGIAKLYHA
KAQSGAMGEDEARKTALATLASMRYGTTGYLFVVDSQLILQMHPTLADMVGKSTAQFKDP
TGKPLYPAIVNAAKDKGYGFAEYQGRLPGSDTALPKIGYVKRFAPWDWNISSAVFLQEVE
AAYVHSLIANLIAILVVGGVVTLAMSLIIRNVQRGLGGEPAYATEIARRIAGGDLAVHVQ
THAGDHDSMLFAMAQMQQQLTGTIGNIKTSADSIASATQQIAAGNADLSQRTEEQASSLE
ETASSMEELTSIVKQNADNARQASTLAGNASDIAVKGGEVVGRVVETMAGINDSSKKIAD
IIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISD
SVGRVENGTTLVAEAGTVIDEVVVAVKRVTGIMGEISAASDEQSSGIEQVNQAVNQMDEV
TQQNAALVEEAAAAALSLEEQGQLLRDAVASFRTA