Protein Info for RPSI07_RS10400 in Ralstonia solanacearum PSI07

Annotation: imidazoleglycerol-phosphate dehydratase HisB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 PF00475: IGPD" amino acids 32 to 175 (144 residues), 215 bits, see alignment E=2.3e-68

Best Hits

Swiss-Prot: 98% identical to HIS7_RALSO: Imidazoleglycerol-phosphate dehydratase (hisB) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K01693, imidazoleglycerol-phosphate dehydratase [EC: 4.2.1.19] (inferred from 96% identity to rpf:Rpic12D_2880)

Predicted SEED Role

"Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)" in subsystem Histidine Biosynthesis (EC 4.2.1.19)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.2.1.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>RPSI07_RS10400 imidazoleglycerol-phosphate dehydratase HisB (Ralstonia solanacearum PSI07)
MSRRAEVTRNTSETQIRVALDLDGTGKQTLNTGVPFLDHMLDQIVRHGMVDLDITATGDT
HIDDHHTVEDVGITLGQAVAKAIGDKKGIVRYGHSYVPLDEALSRVVIDFSGRPGLEFHV
PFTRARVGSFDLDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQIETVFKAFGRALRMAVE
IDPRAAGTIPSTKGAL