Protein Info for RPSI07_RS09950 in Ralstonia solanacearum PSI07

Annotation: preprotein translocase subunit SecE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details TIGR00964: preprotein translocase, SecE subunit" amino acids 68 to 122 (55 residues), 65.2 bits, see alignment E=1.9e-22 PF00584: SecE" amino acids 69 to 122 (54 residues), 69.2 bits, see alignment E=1.2e-23

Best Hits

Swiss-Prot: 43% identical to SECE_VIBAL: Protein translocase subunit SecE (secE) from Vibrio alginolyticus

KEGG orthology group: K03073, preprotein translocase subunit SecE (inferred from 100% identity to rsl:RPSI07_0457)

Predicted SEED Role

"Preprotein translocase subunit SecE (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>RPSI07_RS09950 preprotein translocase subunit SecE (Ralstonia solanacearum PSI07)
MANPNVETVNPSNGKWLLVVAFLLVVAGVIGFYLLAQQPGYVRAASLIGGLVLGAGVALV
STPGQDFLEFARESYREVRKVVWPTRKEAGQMTGLVFAFVVIMALFLWSADKLIEWVIFS
LVLGWK