Protein Info for RPSI07_RS04185 in Ralstonia solanacearum PSI07

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details amino acids 253 to 278 (26 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 344 to 365 (22 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 353 (327 residues), 114.5 bits, see alignment E=2.7e-37

Best Hits

Swiss-Prot: 60% identical to OPDE_PSEAE: Transcription regulatory protein OpdE (opdE) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp0934)

MetaCyc: 42% identical to purine ribonucleoside exporter (Escherichia coli K-12 substr. MG1655)
RXN0-18; RXN0-22

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>RPSI07_RS04185 MFS transporter (Ralstonia solanacearum PSI07)
MEGNTHIDVDRAEAVRQQPAWGAVLALSLGAFVLVASEFMPVSLLTPIAASLQISEGQAG
QAISVSGGLALLTSLFISSVVGRLDRKTLLMLLTLLMVVSGTVVTFASNYVTFIIGRALI
GVAIGGFWSMSAATAMRLVPHRDVPRALAIVNGGNALATVIAAPLGSFLGAVIGWRGAFF
CIVPLATIALVWQCISLPSLKARSGSAGGQAFKLLTQPAVALGMAAVSLFFMGQFALFTY
LRPFLETVTHASVSTLSFVLLVMGVAGFVGTTLIGAFLKDGLYRTLVIIPALMAVIAVAL
MSFGSSVAASAILLGVWGLVGTAAPVGWWTWLARTLPHDAEAGGGLMVAIIQLAITLGAT
VGGLAFDASGYRATFGVSAGVLVAAVALAILAARAGAHAPRTNVAAA