Protein Info for RPSI07_RS03285 in Ralstonia solanacearum PSI07

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 354 to 375 (22 residues), see Phobius details amino acids 381 to 400 (20 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 273 (248 residues), 122.4 bits, see alignment E=2.2e-39 amino acids 252 to 402 (151 residues), 56.5 bits, see alignment E=2.3e-19 PF00083: Sugar_tr" amino acids 28 to 196 (169 residues), 60.7 bits, see alignment E=1.3e-20 amino acids 210 to 408 (199 residues), 40.2 bits, see alignment E=2.1e-14

Best Hits

Swiss-Prot: 74% identical to Y1104_HAEIN: Putative metabolite transport protein HI_1104 (HI_1104) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp0732)

Predicted SEED Role

"Major facilitator superfamily (MFS) transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>RPSI07_RS03285 MFS transporter (Ralstonia solanacearum PSI07)
MPDTGVPVAYPARTSGDAWKALAGSAIGYAMDGFDLLILGFMLPAISAALALTPGESGGL
VTWTLVGAVAGGILFGALSDAYGRVRVLTWTIVLFAVFTGMCAFAQGFTDLLIYRTIAGI
GLGGEFGIGMALAAEAWPAHKRARVSSYVALGWQCGVLLAALLTPLLLPYIGWRGMFLLG
VVPAVVAWFIRNKLHEPELFVRHADATRGKNAFKLLVSDARTTRTSLGIVILCAVQNFGY
YGIMIWLPTYLGKTLGFSLTKSALWTSVTILGMMLGIFAFGHLADRIGRKPTFLIFQAGA
VATVLAYARLTDPVTMLWAGAVMGMFVNGMIGGYGALISEAFPTAARATAQNVLFNIGRA
VGGFGPIVVGSLAAAYSFQVAIALLAGIYVLDMLATIFLVPELKGTELA