Protein Info for RPSI07_RS03265 in Ralstonia solanacearum PSI07

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 PF00005: ABC_tran" amino acids 41 to 189 (149 residues), 139 bits, see alignment E=2.5e-44 PF01078: Mg_chelatase" amino acids 42 to 110 (69 residues), 21.5 bits, see alignment E=2e-08 PF08352: oligo_HPY" amino acids 240 to 272 (33 residues), 29.8 bits, see alignment 9.5e-11

Best Hits

Swiss-Prot: 46% identical to OPPF_BACSU: Oligopeptide transport ATP-binding protein OppF (oppF) from Bacillus subtilis (strain 168)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to rsl:RPSI07_mp0727)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>RPSI07_RS03265 ABC transporter ATP-binding protein (Ralstonia solanacearum PSI07)
MNTEARTGIREEYALELCALTRRFETRHGLFGKPHAFTAVREVSLRLARGETLGLVGESG
CGKSTLAKMLLGLLPPTEGSVLINGREVSPAERRAMARHIQPVFQDPYSSLNPRKTVAQI
VGLPLQLHKIGRAAERAGQVAQMLDLVGMPKRTHAQYPGQLSGGQRQRVAIARALILRPK
ILICDEPTSALDVSVQAQILNLLLDLKQALGLSYLFISHNLSVVEHLADRVAVMHRGSIV
EEGTRASIFAAPAHPYTRMLLSCALTPEPGLGIPDIRHDFEALAA