Protein Info for RPSI07_RS02595 in Ralstonia solanacearum PSI07

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02311: AraC_binding" amino acids 24 to 152 (129 residues), 99.3 bits, see alignment E=2.3e-32 PF12833: HTH_18" amino acids 191 to 266 (76 residues), 66 bits, see alignment E=4.6e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp0589)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>RPSI07_RS02595 AraC family transcriptional regulator (Ralstonia solanacearum PSI07)
MPKRVSADRFTAGVCRLPGVLAVEAASTRSFSRHTHDQFGIGVVLRGAQDSASGRGQVRA
VPGDLITVNPNEVHDGRPVAGEPRAWRMLYFDPALIARLSVEMGRSPGGEFAHPVLDHGP
ATQVFMRLYAALTGPAQEPWQEIAEQELFQILAPLWGDTPPPQEGSSSKGIARAKVRIDA
SPEIPVTLAELAADAGLSRYHFLRAFKAATDLPPHAYRLQRQLQMARRLIFSGHSLAQAT
TMAGFADQSHLTRHFVQTYGLTPGSLATAIRVGA