Protein Info for QEN71_RS44505 in Paraburkholderia sabiae LMG 24235

Annotation: IS21-like element helper ATPase IstB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF01695: IstB_IS21" amino acids 10 to 241 (232 residues), 202 bits, see alignment E=1.1e-63 PF00308: Bac_DnaA" amino acids 71 to 197 (127 residues), 27.6 bits, see alignment E=2.6e-10

Best Hits

Swiss-Prot: 40% identical to Y3427_MYCTU: Putative ATP-binding protein Rv3427c in insertion sequence (Rv3427c) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

KEGG orthology group: None (inferred from 98% identity to bph:Bphy_4904)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>QEN71_RS44505 IS21-like element helper ATPase IstB (Paraburkholderia sabiae LMG 24235)
MHPSPELNTILKQLRLSGILDSLEQRNRQAIDGQLAYTEFLAMLLHDEVARREQKKLGVR
LARAGFSLGKTFENFDFDRAPKLNRAHIHDLAAGRYIDEKVCVLMVGQTGVGKSHLAQAL
GHSAARQGRNVLFITQTELLKKLHAARATDLYERKLQQFVRVPVLIVDDFALKPLRAPHD
EDFHDLIAARYERAATILTSNLDFSEWGDAFPDNRILGAATLDRLRHGAYRVVIEGESFR
KPKPMPENGENAVAKSGKKTHS