Protein Info for QEN71_RS43280 in Paraburkholderia sabiae LMG 24235

Annotation: DUF1788 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 PF08747: BrxB" amino acids 69 to 190 (122 residues), 139 bits, see alignment E=4.4e-45

Best Hits

KEGG orthology group: None (inferred from 89% identity to bgd:bgla_1g14240)

Predicted SEED Role

"putative cytoplasmic protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (192 amino acids)

>QEN71_RS43280 DUF1788 domain-containing protein (Paraburkholderia sabiae LMG 24235)
MSASFDDRLNQMLPRLLLPDVLENKGSGGEIGFWIFDYPSDREMTMRGWLADVIEPGLRK
HSPKLRFATVDLFECVIGLLEDRRLLDKAFEMQQTKGDDALLTSLRSVLKEDRLAARIVE
QTGVADLDLLIVKGVGASYPMVRTHTLLSALHPHMQHKPLLMLYPGRYDGQSLRLFNTLI
DDNYYRAFSLVS