Protein Info for QEN71_RS42075 in Paraburkholderia sabiae LMG 24235

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1017 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 334 to 353 (20 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 385 to 406 (22 residues), see Phobius details amino acids 428 to 451 (24 residues), see Phobius details amino acids 462 to 481 (20 residues), see Phobius details amino acids 522 to 543 (22 residues), see Phobius details amino acids 846 to 866 (21 residues), see Phobius details amino acids 874 to 894 (21 residues), see Phobius details amino acids 901 to 924 (24 residues), see Phobius details amino acids 946 to 969 (24 residues), see Phobius details amino acids 977 to 1003 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1003 (1000 residues), 876.1 bits, see alignment E=3.2e-267

Best Hits

KEGG orthology group: None (inferred from 96% identity to bph:Bphy_7711)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1017 amino acids)

>QEN71_RS42075 efflux RND transporter permease subunit (Paraburkholderia sabiae LMG 24235)
MKFTDIFIERPVLASVVSLLILVLGLRSLSALKVGEYPQTENGVVTIKTSYYGASADTMA
GFITQPLESAIAQAQGIDYMSSKSSAGVSTITATLRLNYDSNRALTEINTQIASVRNQLP
PQAQQPVLTMQVGQTTDAMYVGFHSDVLPSNNVTDYLLRVVKPKLDSIQGVQTAEILGGR
QFALRAWLDSNRLAAHKVTAADVSTALGNNNYLATLGTTKGQMISVDLNAGTDLHSVDDF
KKLVVKQKNGAIVRLEDVANVVLGADNYDFNVAFSGKRSVFIGIKVAPDANVLDVAKRVK
TIFPDLQKQFPTGMTGDIVYDATDFINTAIEEVVKTLVEALLIVTVVISLFLGSFRTVIV
PVIAMPLSLIGTFFVMQLLGYSINLLTLLALVLAIGLVVDDAIIVVENVERHMKEEGKQP
FEAALIAARELGGPILAMTVVLVAVYLPIGFQGGLTGALFTEFAFTLTGAVTVSGVIALS
LSPMMCSRFFRTDQESGRFARFVDRQFERVHRGYGGLLHAMLDTWPVFIVMGALLLCGTV
YLFTTSKSELAPQEDQGIVLSKIQGPPNATIQQMQTYADQVFDISKQLPEYSQMFQLTGA
PTLNQGFGGVLFKTWDKRKKGATQLQNELQQKWDSIAGARVAAFQFPPLPGAQGLPVQFV
ISTTEPFENLNEVSQAVLQKARESGMFFFVDSDLKIDKPESVLLVDRDKVASLGLSQSDV
GQTLGAALGGNYVNYFSIAGRSYKVIPQVLQTDRLNPSQVLDYYLRTPDGSVISASTVTH
LKQTIVPESINHFQQLNSATISGVLAPGISQGEVLDFLRKASTDVAPTGYTTDYSGLSRQ
FVQESGGFVITLLFAAIIVFLALAAQFESFRDPVVILVSVPMALFGALIFINMGLSTLNI
YTQVGLVTLMGLISKHGILIVQFANELQRAGRGKREALEEAAGVRLRPILMTTAAMVLGV
LPLVTASGAGAAGRNAMGLVIFTGLSIGTLFTLFVVPAMYMLLGADHHLKSNQTGAV